CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 16

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a16K16TnonsynaAgaCg17599175750.99863625438-25440
ORF3a16K16TnonsynaAGaCT17599200.0011364325438-25440
ORF3a16K16TnonsynaAGaCA1759940.00022728625438-25440
ORF3a16K16NnonsynaaGaaT552753890.97503225438-25440
ORF3a16K16NnonsynaaGaaC55271380.024968325438-25440
ORF3a16K16deldelAAG---691691125438-25440
ORF3a16K16RnonsynaAgaGg288288125438-25440
ORF3a16K16EnonsynAagGag277277125438-25440
ORF3a16K16KsynaaGaaA224224125438-25440
ORF3a16K16MnonsynaAgaTg4343125438-25440
ORF3a16K16QnonsynAagCag3939125438-25440
ORF3a16K16del1delAag-ag1470.525438-25440
ORF3a16K16del1delaaGaa-1470.525438-25440
ORF3a16K16XnonsynAagTag1010125438-25440
ORF3a16K16del2delAAg--g530.625438-25440
ORF3a16K16del2delaAGa--520.425438-25440
ORF3a16K16InonsynaAGaTT33125438-25440
ORF3a16K16LnonsynAAgTTg320.66666725438-25440
ORF3a16K16LnonsynAAGCTC310.33333325438-25440
ORF3a16K16DnonsynAaGGaT22125438-25440
ORF3a16K16GnonsynAAGGGC11125438-25440
ORF3a16K16YnonsynAaGTaT11125438-25440

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a16K16TaAgaCg1757517599All0.003361
ORF3a16K16TaAGaCT2017599All0.000004
ORF3a16K16TaAGaCA417599All0.000001
ORF3a16K16TaAgaCg71247131B.1.617.20.026825
ORF3a16K16TaAGaCT47131B.1.617.20.000015
ORF3a16K16TaAGaCA37131B.1.617.20.000011
ORF3a16K16NaaGaaT53895527All0.001031
ORF3a16K16NaaGaaC1385527All0.000026
ORF3a16K16TaAgaCg46114618AY.1020.122256
ORF3a16K16TaAGaCT74618AY.1020.000186
ORF3a16K16TaAgaCg24292432AY.390.060024
ORF3a16K16TaAGaCT22432AY.390.000049
ORF3a16K16TaAGaCA12432AY.390.000025
ORF3a16K16NaaGaaT856856B.1.177.180.993039
ORF3a16K16NaaGaaT788830B.1.1.70.000705
ORF3a16K16NaaGaaC42830B.1.1.70.000038
ORF3a16K16TaAgaCg815816AY.1200.030301
ORF3a16K16TaAGaCT1816AY.1200.000037
ORF3a16K16delAAG---691691All0.000132
ORF3a16K16TaAgaCg399400AY.430.001768
ORF3a16K16TaAGaCT1400AY.430.000004
ORF3a16K16NaaGaaT382398AY.250.002298
ORF3a16K16NaaGaaC16398AY.250.000096
ORF3a16K16NaaGaaT381381B.1.36.350.992188
ORF3a16K16NaaGaaT328356B.1.20.002888
ORF3a16K16NaaGaaC28356B.1.20.000247
ORF3a16K16RaAgaGg288288All0.000055
ORF3a16K16EAagGag277277All0.000053
ORF3a16K16NaaGaaT266267AY.40.000414
ORF3a16K16NaaGaaC1267AY.40.000002
ORF3a16K16KaaGaaA224224All0.000043
ORF3a16K16TaAgaCg220220AY.440.001339
ORF3a16K16NaaGaaT211211AY.430.000935
ORF3a16K16NaaGaaT189189B.1.3690.053908
ORF3a16K16delAAG---188188B.1.1.70.000168
ORF3a16K16NaaGaaT179180B.1.617.20.000674
ORF3a16K16NaaGaaC1180B.1.617.20.000004
ORF3a16K16TaAgaCg153154AY.46.40.025169
ORF3a16K16TaAGaCT1154AY.46.40.000165
ORF3a16K16NaaGaaT152153B.1.1770.002001
ORF3a16K16NaaGaaC1153B.1.1770.000013
ORF3a16K16NaaGaaT145145AY.90.009801
ORF3a16K16EAagGag133133B.1.1770.001751
ORF3a16K16NaaGaaT124124AY.1030.00077
ORF3a16K16RaAgaGg112112AY.40.000174
ORF3a16K16TaAgaCg106106AY.450.012899
ORF3a16K16TaAgaCg104105AY.460.010824
ORF3a16K16TaAGaCT1105AY.460.000104
ORF3a16K16NaaGaaT8788P.10.001371
ORF3a16K16NaaGaaC188P.10.000016
ORF3a16K16NaaGaaT8686AY.30.000855
ORF3a16K16TaAgaCg8585AY.370.026865
ORF3a16K16delAAG---7979AY.440.000481
ORF3a16K16TaAgaCg7777AY.1030.000478
ORF3a16K16RaAgaGg7676B.1.1.70.000068
ORF3a16K16NaaGaaT7676P.1.140.003633
ORF3a16K16TaAgaCg7474AY.1170.006254
ORF3a16K16TaAgaCg7373AY.1160.020935
ORF3a16K16delAAG---7272AZ.10.062446
ORF3a16K16NaaGaaT6971B.10.000632
ORF3a16K16NaaGaaC271B.10.000018
ORF3a16K16TaAgaCg6566AY.840.028434
ORF3a16K16TaAGaCT166AY.840.000437
ORF3a16K16TaAgaCg6464AY.46.20.040661
ORF3a16K16NaaGaaT6363B.1.621.10.031866
ORF3a16K16TaAgaCg5959AY.5.40.016325
ORF3a16K16TaAgaCg5858AY.1190.002048
ORF3a16K16NaaGaaT5858AY.440.000353
ORF3a16K16delAAG---5858B.1.20.000511
ORF3a16K16TaAgaCg5656AY.1060.018754
ORF3a16K16TaAgaCg5656AY.540.005339
ORF3a16K16KaaGaaA5656B.1.1.70.00005
ORF3a16K16NaaGaaT2754B.1.4290.000635
ORF3a16K16NaaGaaC2754B.1.4290.000635
ORF3a16K16NaaGaaT4444AY.390.001087
ORF3a16K16MaAgaTg4343All0.000008
ORF3a16K16delAAG---4343AY.40.000067
ORF3a16K16TaAgaCg4040AY.330.002671
ORF3a16K16QAagCag3939All0.000007
ORF3a16K16TaAgaCg3939AY.1110.007143
ORF3a16K16NaaGaaT3939AY.60.001604
ORF3a16K16NaaGaaT3939B.1.1.5190.001549
ORF3a16K16NaaGaaT3838B.1.10.000689
ORF3a16K16TaAgaCg3636AY.230.002511
ORF3a16K16EAagGag3636B.1.1.70.000032
ORF3a16K16TaAgaCg3535AY.980.002765
ORF3a16K16TaAgaCg3232AY.5.30.010796
ORF3a16K16TaAgaCg3030AY.680.008212
ORF3a16K16NaaGaaT2929AY.4.50.003117
ORF3a16K16TaAgaCg2828AY.220.058577
ORF3a16K16RaAgaGg2828B.1.3510.000832
ORF3a16K16KaaGaaA2828B.1.36.290.014485
ORF3a16K16NaaGaaT2527AY.750.001401
ORF3a16K16NaaGaaC227AY.750.000112
ORF3a16K16KaaGaaA2727B.1.2540.675
ORF3a16K16NaaGaaT2525AY.460.002602
ORF3a16K16TaAgaCg2525AY.880.022104
ORF3a16K16NaaGaaT2425B.1.5250.002716
ORF3a16K16NaaGaaC125B.1.5250.000113
ORF3a16K16NaaGaaT2424A.210.066482
ORF3a16K16TaAgaCg2424AY.34.10.012239
ORF3a16K16TaAgaCg2424AY.470.000747
ORF3a16K16delAAG---2323AY.250.000138
ORF3a16K16TaAgaCg2222AY.46.10.022587
ORF3a16K16delAAG---2222B.10.000202
ORF3a16K16NaaGaaT2020AY.1020.00053
ORF3a16K16delAAG---2020AY.1030.000124
ORF3a16K16TaAgaCg2020AY.200.000777
ORF3a16K16TaAgaCg2020AY.730.013307
ORF3a16K16TaAgaCg2020B.10.000183
ORF3a16K16NaaGaaT2020B.1.1.10.006534
ORF3a16K16EAagGag2020B.1.6210.00177
ORF3a16K16NaaGaaT2020B.1.6360.134228
ORF3a16K16TaAgaCg1919AY.1050.012219
ORF3a16K16TaAgaCg1919AY.98.10.00092
ORF3a16K16NaaGaaT1919B.1.3510.000565
ORF3a16K16TaAgaCg1818AY.1000.000828
ORF3a16K16TaAgaCg1818AY.420.000724
ORF3a16K16NaaGaaT1718AY.470.000529
ORF3a16K16NaaGaaC118AY.470.000031
ORF3a16K16TaAgaCg1818AY.820.024423
ORF3a16K16delAAG---1818P.10.000284
ORF3a16K16TaAgaCg1717AY.50.000351
ORF3a16K16TaAgaCg1616AY.46.60.001155
ORF3a16K16NaaGaaT1616B.1.1600.000499
ORF3a16K16EAagGag1616B.1.20.000141
ORF3a16K16delAAG---1616B.1.617.20.00006
ORF3a16K16EAagGag1616B.1.617.20.00006
ORF3a16K16TaAgaCg1515AY.30.000149
ORF3a16K16EAagGag1515AY.440.000091
ORF3a16K16TaAgaCg1515AY.740.001735
ORF3a16K16delAAG---1515B.1.1770.000198
ORF3a16K16del1Aag-ag714All0.000001
ORF3a16K16del1aaGaa-714All0.000001
ORF3a16K16TaAgaCg1414AY.140.001232
ORF3a16K16TaAgaCg1414AY.360.002075
ORF3a16K16NaaGaaT1414AY.610.001467
ORF3a16K16TaAgaCg1414AY.920.004022
ORF3a16K16NaaGaaT1414B.1.5960.00122
ORF3a16K16TaAgaCg1313AY.1100.001465
ORF3a16K16TaAgaCg1313AY.1210.001759
ORF3a16K16TaAgaCg1313AY.40.00002
ORF3a16K16KaaGaaA1313AY.430.000058
ORF3a16K16TaAgaCg1313AY.520.010586
ORF3a16K16NaaGaaT1313B.1.1110.015276
ORF3a16K16NaaGaaT1212AY.1180.000752
ORF3a16K16KaaGaaA1212AY.40.000019
ORF3a16K16TaAgaCg1212AY.890.058824
ORF3a16K16NaaGaaT1212B.1.1.3010.014151
ORF3a16K16QAagCag1212B.1.1.70.000011
ORF3a16K16NaaGaaT1212B.1.6280.004228
ORF3a16K16TaAgaCg1011AY.1180.000626
ORF3a16K16TaAGaCT111AY.1180.000063
ORF3a16K16NaaGaaT1011AY.1190.000353
ORF3a16K16NaaGaaC111AY.1190.000035
ORF3a16K16NaaGaaT1111AY.1210.001488
ORF3a16K16TaAgaCg1111AY.870.009159
ORF3a16K16RaAgaGg1111P.10.000173
ORF3a16K16XAagTag1010All0.000002
ORF3a16K16MaAgaTg1010AY.1190.000353
ORF3a16K16NaaGaaT1010AY.330.000668
ORF3a16K16TaAgaCg1010AY.640.005952
ORF3a16K16TaAgaCg1010AY.850.004272
ORF3a16K16NaaGaaT910AY.920.002585
ORF3a16K16NaaGaaC110AY.920.000287
ORF3a16K16NaaGaaT1010B.1.466.20.003912
ORF3a16K16KaaGaaA1010B.1.617.20.000038
ORF3a16K16NaaGaaT99AY.1200.000335
ORF3a16K16TaAgaCg99AY.190.010262
ORF3a16K16NaaGaaT99AY.4.2.10.001341
ORF3a16K16NaaGaaT89AY.50.000165
ORF3a16K16NaaGaaC19AY.50.000021
ORF3a16K16TaAgaCg99AY.750.000504
ORF3a16K16TaAgaCg99AY.860.007469
ORF3a16K16TaAgaCg99AY.99.20.000829
ORF3a16K16delAAG---99B.1.1.5190.000357
ORF3a16K16NaaGaaT99B.1.617.10.001161
ORF3a16K16NaaGaaT99B.1.6210.000797
ORF3a16K16NaaGaaT99B.1.9.50.051136
ORF3a16K16TaAgaCg88AY.1130.001139
ORF3a16K16TaAgaCg88AY.320.00426
ORF3a16K16EAagGag88AY.40.000012
ORF3a16K16TaAgaCg88AY.4.30.006734
ORF3a16K16delAAG---88AY.4.50.00086
ORF3a16K16TaAgaCg88AY.560.012841
ORF3a16K16NaaGaaT88AY.620.003486
ORF3a16K16TaAgaCg88AY.770.009019
ORF3a16K16NaaGaaT88B.1.1.3170.003294
ORF3a16K16TaAgaCg88B.1.1.70.000007
ORF3a16K16delAAG---88B.1.4290.000188
ORF3a16K16TaAgaCg77AY.160.002658
ORF3a16K16TaAgaCg77AY.260.000198
ORF3a16K16NaaGaaT77AY.260.000198
ORF3a16K16delAAG---77AY.430.000031
ORF3a16K16TaAgaCg77AY.530.002013
ORF3a16K16TaAgaCg77AY.580.006352
ORF3a16K16delAAG---77B.1.1.3170.002882
ORF3a16K16KaaGaaA77B.1.36.10.007982
ORF3a16K16NaaGaaT77B.1.5260.000165
ORF3a16K16TaAgaCg66AY.250.000036
ORF3a16K16NaaGaaT66AY.450.00073
ORF3a16K16TaAgaCg66AY.660.006417
ORF3a16K16TaAgaCg66AY.710.00285
ORF3a16K16TaAgaCg66AY.780.009245
ORF3a16K16KaaGaaA66B.10.000055
ORF3a16K16NaaGaaT66B.1.1.3060.00263
ORF3a16K16NaaGaaT66B.1.2430.000418
ORF3a16K16NaaGaaT66B.1.3110.001647
ORF3a16K16NaaGaaC46B.1.4270.000202
ORF3a16K16NaaGaaT26B.1.4270.000101
ORF3a16K16NaaGaaT66B.1.5950.001566
ORF3a16K16MaAgaTg66B.1.617.20.000023
ORF3a16K16delAAG---66P.1.140.000287
ORF3a16K16del2AAg--g35All0.000001
ORF3a16K16del2aAGa--25All0
ORF3a16K16TaAgaCg55AY.10.001979
ORF3a16K16RaAgaGg55AY.1030.000031
ORF3a16K16TaAgaCg55AY.1140.001156
ORF3a16K16KaaGaaA55AY.1210.000677
ORF3a16K16NaaGaaT55AY.290.000079
ORF3a16K16delAAG---55AY.290.000079
ORF3a16K16MaAgaTg55AY.40.000008
ORF3a16K16RaAgaGg55AY.440.00003
ORF3a16K16NaaGaaT55AY.540.000477
ORF3a16K16NaaGaaT55AY.590.002648
ORF3a16K16TaAgaCg55AY.75.10.000902
ORF3a16K16TaAgaCg55AY.950.003805
ORF3a16K16NaaGaaT55AY.98.10.000242
ORF3a16K16TaAgaCg55AY.990.005247
ORF3a16K16delAAG---55B.1.10.000091
ORF3a16K16NaaGaaT55B.1.1.280.001556
ORF3a16K16MaAgaTg55B.1.1.70.000004
ORF3a16K16RaAgaGg55B.1.20.000044
ORF3a16K16NaaGaaT55B.1.3670.003962
ORF3a16K16KaaGaaA55B.1.4290.000118
ORF3a16K16RaAgaGg55B.1.617.20.000019
ORF3a16K16NaaGaaT55R.10.00045
ORF3a16K16MaAgaTg440.222222
ORF3a16K16TaAgaCg44AY.100.00212
ORF3a16K16RaAgaGg44AY.1020.000106
ORF3a16K16NaaGaaT44AY.1130.00057
ORF3a16K16NaaGaaT44AY.1160.001147
ORF3a16K16NaaGaaT44AY.230.000279
ORF3a16K16EAagGag44AY.3.10.000341
ORF3a16K16TaAgaCg44AY.340.000388
ORF3a16K16KaaGaaA44AY.390.000099
ORF3a16K16NaaGaaT44AY.4.20.000087
ORF3a16K16TaAgaCg44AY.400.003857
ORF3a16K16NaaGaaT44AY.580.00363
ORF3a16K16TaAgaCg44AY.610.000419
ORF3a16K16TaAgaCg44AY.620.001743
ORF3a16K16NaaGaaT44AY.680.001095
ORF3a16K16NaaGaaT44AY.75.10.000721
ORF3a16K16NaaGaaT44AY.80.002424
ORF3a16K16QAagCag44B.10.000037
ORF3a16K16NaaGaaT44B.1.1.1980.005874
ORF3a16K16RaAgaGg44B.1.1.330.001684
ORF3a16K16NaaGaaT44B.1.1.4090.011331
ORF3a16K16del1Aag-ag34B.1.1.70.000003
ORF3a16K16del1aaGaa-14B.1.1.70.000001
ORF3a16K16QAagCag44B.1.20.000035
ORF3a16K16NaaGaaT44B.1.36.290.002069
ORF3a16K16NaaGaaT44P.1.10.001271
ORF3a16K16NaaGaaT44P.1.70.001277
ORF3a16K16NaaGaaT44P.20.000747
ORF3a16K16NaaGaaT33A.10.000846
ORF3a16K16IaAGaTT33All0.000001
ORF3a16K16LAAgTTg23All0
ORF3a16K16LAAGCTC13All0
ORF3a16K16EAagGag33AY.1000.000138
ORF3a16K16EAagGag33AY.1020.00008
ORF3a16K16TaAgaCg33AY.1080.003308
ORF3a16K16delAAG---33AY.1180.000188
ORF3a16K16NaaGaaT33AY.140.000264
ORF3a16K16NaaGaaT33AY.20.001068
ORF3a16K16KaaGaaA33AY.260.000085
ORF3a16K16KaaGaaA33AY.340.000291
ORF3a16K16NaaGaaT33AY.340.000291
ORF3a16K16KaaGaaA33AY.34.10.00153
ORF3a16K16QAagCag33AY.40.000005
ORF3a16K16RaAgaGg33AY.4.2.10.000447
ORF3a16K16TaAgaCg33AY.4.50.000322
ORF3a16K16NaaGaaT33AY.420.000121
ORF3a16K16TaAgaCg33AY.480.001395
ORF3a16K16delAAG---33AY.50.000062
ORF3a16K16QAagCag33AY.530.000863
ORF3a16K16TaAgaCg33AY.550.002752
ORF3a16K16delAAG---33AY.60.000123
ORF3a16K16EAagGag33AY.610.000314
ORF3a16K16TaAgaCg33AY.800.003386
ORF3a16K16TaAgaCg33AY.9.20.00011
ORF3a16K16NaaGaaT23AY.9.20.000073
ORF3a16K16NaaGaaC13AY.9.20.000037
ORF3a16K16NaaGaaT33AY.950.002283
ORF3a16K16TaAgaCg33AY.960.006224
ORF3a16K16NaaGaaT33AY.99.20.000276
ORF3a16K16KaaGaaA33B.1.10.000054
ORF3a16K16NaaGaaT33B.1.1.270.016949
ORF3a16K16NaaGaaT33B.1.1.30.026087
ORF3a16K16KaaGaaA33B.1.1.5190.000119
ORF3a16K16NaaGaaT33B.1.1.5230.004687
ORF3a16K16RaAgaGg33B.1.1770.00004
ORF3a16K16NaaGaaT33B.1.177.690.004451
ORF3a16K16NaaGaaT33B.1.177.810.000568
ORF3a16K16NaaGaaT33B.1.177.820.001432
ORF3a16K16TaAgaCg33B.1.20.000026
ORF3a16K16KaaGaaA33B.1.20.000026
ORF3a16K16delAAG---33B.1.2210.000213
ORF3a16K16NaaGaaT33B.1.2580.0002
ORF3a16K16RaAgaGg33B.1.360.000438
ORF3a16K16NaaGaaT23B.1.360.000292
ORF3a16K16NaaGaaC13B.1.360.000146
ORF3a16K16NaaGaaT33B.1.5640.001278
ORF3a16K16NaaGaaT33N.10.050847
ORF3a16K16NaaGaaT33P.1.150.000697
ORF3a16K16delAAG---33U.30.011583
ORF3a16K16XAagTag220.111111
ORF3a16K16LAAgTTg220.111111
ORF3a16K16IaAGaTT220.111111
ORF3a16K16NaaGaaT22A0.000774
ORF3a16K16DAaGGaT22A.10.000564
ORF3a16K16NaaGaaT22A.2.50.000998
ORF3a16K16DAaGGaT22All0
ORF3a16K16NaaGaaT22AY.1000.000092
ORF3a16K16QAagCag22AY.1030.000012
ORF3a16K16KaaGaaA22AY.1030.000012
ORF3a16K16NaaGaaT22AY.1080.002205
ORF3a16K16delAAG---22AY.1110.000366
ORF3a16K16NaaGaaT22AY.1170.000169
ORF3a16K16TaAgaCg22AY.120.10.000642
ORF3a16K16NaaGaaT22AY.170.016393
ORF3a16K16NaaGaaT22AY.200.000078
ORF3a16K16RaAgaGg22AY.250.000012
ORF3a16K16del2AAg--g22AY.250.000012
ORF3a16K16KaaGaaA22AY.250.000012
ORF3a16K16delAAG---22AY.270.000129
ORF3a16K16TaAgaCg22AY.290.000032
ORF3a16K16KaaGaaA22AY.290.000032
ORF3a16K16RaAgaGg22AY.3.10.000171
ORF3a16K16TaAgaCg22AY.350.000466
ORF3a16K16RaAgaGg22AY.390.000049
ORF3a16K16NaaGaaT22AY.39.10.000079
ORF3a16K16NaaGaaT22AY.410.000588
ORF3a16K16RaAgaGg22AY.420.00008
ORF3a16K16MaAgaTg22AY.430.000009
ORF3a16K16EAagGag22AY.430.000009
ORF3a16K16KaaGaaA22AY.440.000012
ORF3a16K16delAAG---22AY.470.000062
ORF3a16K16TaAgaCg22AY.510.001818
ORF3a16K16NaaGaaT22AY.550.001835
ORF3a16K16TaAgaCg22AY.590.001059
ORF3a16K16TaAgaCg22AY.650.001066
ORF3a16K16TaAgaCg22AY.690.000373
ORF3a16K16TaAgaCg22AY.700.000417
ORF3a16K16NaaGaaT22AY.700.000417
ORF3a16K16NaaGaaT22AY.840.000875
ORF3a16K16TaAgaCg22AY.930.000546
ORF3a16K16NaaGaaT22B0.000256
ORF3a16K16EAagGag22B.10.000018
ORF3a16K16QAagCag22B.1.1.1890.003026
ORF3a16K16NaaGaaT22B.1.1.2140.000111
ORF3a16K16delAAG---22B.1.1.2140.000111
ORF3a16K16NaaGaaT22B.1.1.2200.003717
ORF3a16K16NaaGaaC22B.1.1.3760.011905
ORF3a16K16NaaGaaT22B.1.1.500.001358
ORF3a16K16TaAgaCg22B.1.1.5190.000079
ORF3a16K16XAagTag22B.1.1.70.000002
ORF3a16K16TaAgaCg22B.1.1.700.000682
ORF3a16K16EAagGag22B.1.1600.000062
ORF3a16K16delAAG---22B.1.177.120.000303
ORF3a16K16delAAG---22B.1.177.40.000422
ORF3a16K16NaaGaaT22B.1.2210.000142
ORF3a16K16NaaGaaT22B.1.2320.001075
ORF3a16K16KaaGaaA22B.1.360.000292
ORF3a16K16delAAG---22B.1.4090.001563
ORF3a16K16QAagCag22B.1.4270.000101
ORF3a16K16delAAG---22B.1.4270.000101
ORF3a16K16NaaGaaT22B.1.4560.006536
ORF3a16K16NaaGaaT22B.1.4620.014493
ORF3a16K16NaaGaaT22B.1.4650.007605
ORF3a16K16MaAgaTg22B.1.4990.002101
ORF3a16K16delAAG---22B.1.5260.000047
ORF3a16K16KaaGaaA22B.1.5260.000047
ORF3a16K16NaaGaaT22B.1.5600.009259
ORF3a16K16del1aaGaa-22B.1.617.20.000008
ORF3a16K16delAAG---22C.370.000232
ORF3a16K16KaaGaaA22P.10.000032
ORF3a16K16NaaGaaT22P.1.20.002312
ORF3a16K16NaaGaaT22Q.10.000253
ORF3a16K16NaaGaaT22Q.80.00033
ORF3a16K16delAAG---11A.2.50.000499
ORF3a16K16NaaGaaT11A.2.5.20.001572
ORF3a16K16NaaGaaT11AD.20.000219
ORF3a16K16YAaGTaT11All0
ORF3a16K16GAAGGGC11All0
ORF3a16K16NaaGaaT11AP.10.001502
ORF3a16K16KaaGaaA11AY.1010.00049
ORF3a16K16QAagCag11AY.1020.000027
ORF3a16K16del1Aag-ag11AY.1030.000006
ORF3a16K16TaAgaCg11AY.1040.001984
ORF3a16K16delAAG---11AY.1050.000643
ORF3a16K16NaaGaaT11AY.1050.000643
ORF3a16K16TaAgaCg11AY.1070.000466
ORF3a16K16NaaGaaT11AY.1100.000113
ORF3a16K16NaaGaaT11AY.1110.000183
ORF3a16K16NaaGaaT11AY.1140.000231
ORF3a16K16delAAG---11AY.1170.000085
ORF3a16K16RaAgaGg11AY.1180.000063
ORF3a16K16KaaGaaA11AY.1190.000035
ORF3a16K16RaAgaGg11AY.1190.000035
ORF3a16K16TaAgaCg11AY.120.000316
ORF3a16K16RaAgaGg11AY.1200.000037
ORF3a16K16delAAG---11AY.1200.000037
ORF3a16K16EAagGag11AY.1200.000037
ORF3a16K16NaaGaaT11AY.120.10.000321
ORF3a16K16NaaGaaT11AY.120.20.001285
ORF3a16K16NaaGaaT11AY.130.000161
ORF3a16K16TaAgaCg11AY.130.000161
ORF3a16K16TaAgaCg11AY.150.002222
ORF3a16K16NaaGaaT11AY.160.00038
ORF3a16K16QAagCag11AY.16.10.00047
ORF3a16K16NaaGaaT11AY.16.10.00047
ORF3a16K16KaaGaaA11AY.190.00114
ORF3a16K16NaaGaaT11AY.190.00114
ORF3a16K16delAAG---11AY.200.000039
ORF3a16K16delAAG---11AY.230.00007
ORF3a16K16MaAgaTg11AY.230.00007
ORF3a16K16XAagTag11AY.250.000006
ORF3a16K16EAagGag11AY.260.000028
ORF3a16K16delAAG---11AY.260.000028
ORF3a16K16QAagCag11AY.29.10.000221
ORF3a16K16EAagGag11AY.30.00001
ORF3a16K16delAAG---11AY.3.10.000085
ORF3a16K16KaaGaaA11AY.3.10.000085
ORF3a16K16KaaGaaA11AY.300.000396
ORF3a16K16delAAG---11AY.330.000067
ORF3a16K16NaaGaaT11AY.350.000233
ORF3a16K16EAagGag11AY.380.000499
ORF3a16K16del1aaGaa-11AY.39.10.00004
ORF3a16K16RaAgaGg11AY.39.20.001541
ORF3a16K16del1aaGaa-11AY.40.000002
ORF3a16K16del2AAg--g11AY.40.000002
ORF3a16K16KaaGaaA11AY.4.2.10.000149
ORF3a16K16NaaGaaT11AY.4.30.000842
ORF3a16K16TaAgaCg11AY.4.40.000409
ORF3a16K16XAagTag11AY.4.50.000107
ORF3a16K16del1Aag-ag11AY.4.50.000107
ORF3a16K16RaAgaGg11AY.4.50.000107
ORF3a16K16TaAgaCg11AY.410.000294
ORF3a16K16delAAG---11AY.420.00004
ORF3a16K16del1aaGaa-11AY.430.000004
ORF3a16K16QAagCag11AY.440.000006
ORF3a16K16YAaGTaT11AY.440.000006
ORF3a16K16XAagTag11AY.440.000006
ORF3a16K16KaaGaaA11AY.450.000122
ORF3a16K16NaaGaaT11AY.46.10.001027
ORF3a16K16KaaGaaA11AY.46.10.001027
ORF3a16K16delAAG---11AY.46.20.000635
ORF3a16K16NaaGaaT11AY.46.40.000165
ORF3a16K16EAagGag11AY.46.40.000165
ORF3a16K16NaaGaaT11AY.46.50.000198
ORF3a16K16NaaGaaT11AY.46.60.000072
ORF3a16K16EAagGag11AY.5.30.000337
ORF3a16K16delAAG---11AY.5.40.000277
ORF3a16K16NaaGaaT11AY.510.000909
ORF3a16K16NaaGaaT11AY.520.000814
ORF3a16K16TaAgaCg11AY.570.000656
ORF3a16K16TaAgaCg11AY.60.000041
ORF3a16K16NaaGaaT11AY.600.000938
ORF3a16K16delAAG---11AY.600.000938
ORF3a16K16KaaGaaA11AY.610.000105
ORF3a16K16TaAgaCg11AY.630.000387
ORF3a16K16TaAgaCg11AY.670.000464
ORF3a16K16NaaGaaT11AY.70.000196
ORF3a16K16TaAgaCg11AY.70.000196
ORF3a16K16NaaGaaC11AY.7.10.000113
ORF3a16K16NaaGaaT11AY.740.000116
ORF3a16K16delAAG---11AY.760.004831
ORF3a16K16NaaGaaT11AY.790.001211
ORF3a16K16GAAGGGC11AY.790.001211
ORF3a16K16TaAgaCg11AY.790.001211
ORF3a16K16TaAgaCg11AY.80.000606
ORF3a16K16TaAgaCg11AY.810.001992
ORF3a16K16NaaGaaT11AY.870.000833
ORF3a16K16delAAG---11AY.90.000068
ORF3a16K16NaaGaaT11AY.9.10.000084
ORF3a16K16TaAgaCg11AY.9.10.000084
ORF3a16K16delAAG---11AY.9.20.000037
ORF3a16K16EAagGag11AY.9.20.000037
ORF3a16K16NaaGaaT11AY.9.2.10.001976
ORF3a16K16TaAGaCT11AY.900.000684
ORF3a16K16TaAgaCg11AY.910.00073
ORF3a16K16EAagGag11AY.910.00073
ORF3a16K16delAAG---11AY.980.000079
ORF3a16K16delAAG---11AY.990.001049
ORF3a16K16NaaGaaT11AY.990.001049
ORF3a16K16delAAG---11AZ.20.000821
ORF3a16K16delAAG---11B0.000128
ORF3a16K16RaAgaGg11B.10.000009
ORF3a16K16LAAGCTC11B.10.000009
ORF3a16K16MaAgaTg11B.10.000009
ORF3a16K16RaAgaGg11B.1.10.000018
ORF3a16K16XAagTag11B.1.10.000018
ORF3a16K16MaAgaTg11B.1.10.000018
ORF3a16K16KaaGaaA11B.1.1.100.001115
ORF3a16K16NaaGaaT11B.1.1.1480.008772
ORF3a16K16NaaGaaT11B.1.1.1710.003676
ORF3a16K16NaaGaaT11B.1.1.2160.00089
ORF3a16K16RaAgaGg11B.1.1.2220.000204
ORF3a16K16NaaGaaT11B.1.1.2220.000204
ORF3a16K16delAAG---11B.1.1.2360.006897
ORF3a16K16NaaGaaT11B.1.1.250.000569
ORF3a16K16del1Aag-ag11B.1.1.250.000569
ORF3a16K16NaaGaaT11B.1.1.2550.00303
ORF3a16K16EAagGag11B.1.1.2770.000759
ORF3a16K16NaaGaaT11B.1.1.2840.000107
ORF3a16K16NaaGaaT11B.1.1.2940.001266
ORF3a16K16NaaGaaT11B.1.1.3050.003861
ORF3a16K16NaaGaaT11B.1.1.3180.000302
ORF3a16K16EAagGag11B.1.1.3260.001761
ORF3a16K16NaaGaaT11B.1.1.3260.001761
ORF3a16K16NaaGaaT11B.1.1.3480.000796
ORF3a16K16NaaGaaT11B.1.1.3510.002793
ORF3a16K16EAagGag11B.1.1.3690.000446
ORF3a16K16NaaGaaT11B.1.1.370.000193
ORF3a16K16delAAG---11B.1.1.370.000193
ORF3a16K16KaaGaaA11B.1.1.3720.000689
ORF3a16K16NaaGaaT11B.1.1.3780.007299
ORF3a16K16delAAG---11B.1.1.4090.002833
ORF3a16K16NaaGaaT11B.1.1.4120.007634
ORF3a16K16NaaGaaT11B.1.1.4320.001266
ORF3a16K16EAagGag11B.1.1.4340.000349
ORF3a16K16NaaGaaT11B.1.1.4640.001473
ORF3a16K16NaaGaaT11B.1.1.470.005348
ORF3a16K16NaaGaaT11B.1.1.4850.016667
ORF3a16K16NaaGaaT11B.1.1.5180.006329
ORF3a16K16RaAgaGg11B.1.1.5190.00004
ORF3a16K16NaaGaaT11B.1.1.5210.005348
ORF3a16K16delAAG---11B.1.1.630.000386
ORF3a16K16del2aAGa--11B.1.1.70.000001
ORF3a16K16NaaGaaT11B.1.1150.021739
ORF3a16K16delAAG---11B.1.1420.002899
ORF3a16K16NaaGaaT11B.1.1470.000756
ORF3a16K16RaAgaGg11B.1.1600.000031
ORF3a16K16NaaGaaT11B.1.160.160.000929
ORF3a16K16EAagGag11B.1.160.200.008929
ORF3a16K16delAAG---11B.1.160.230.004831
ORF3a16K16del1aaGaa-11B.1.1770.000013
ORF3a16K16XAagTag11B.1.1770.000013
ORF3a16K16NaaGaaT11B.1.177.120.000152
ORF3a16K16NaaGaaT11B.1.177.150.000631
ORF3a16K16IaAGaTT11B.1.177.180.00116
ORF3a16K16delAAG---11B.1.177.190.001431
ORF3a16K16NaaGaaT11B.1.177.210.000076
ORF3a16K16RaAgaGg11B.1.177.290.066667
ORF3a16K16NaaGaaT11B.1.177.480.003125
ORF3a16K16delAAG---11B.1.177.570.000281
ORF3a16K16delAAG---11B.1.177.580.001332
ORF3a16K16delAAG---11B.1.177.60.000977
ORF3a16K16delAAG---11B.1.177.70.000165
ORF3a16K16TaAgaCg11B.1.177.730.000566
ORF3a16K16delAAG---11B.1.177.760.002494
ORF3a16K16NaaGaaT11B.1.177.860.000183
ORF3a16K16MaAgaTg11B.1.20.000009
ORF3a16K16NaaGaaT11B.1.214.20.0006
ORF3a16K16MaAgaTg11B.1.2210.000071
ORF3a16K16delAAG---11B.1.221.10.002907
ORF3a16K16RaAgaGg11B.1.2340.000132
ORF3a16K16TaAgaCg11B.1.2400.000216
ORF3a16K16TaAgaCg11B.1.2580.000067
ORF3a16K16del2aAGa--11B.1.258.100.011364
ORF3a16K16QAagCag11B.1.258.170.000104
ORF3a16K16KaaGaaA11B.1.3110.000275
ORF3a16K16NaaGaaT11B.1.3400.004292
ORF3a16K16NaaGaaT11B.1.3490.000715
ORF3a16K16delAAG---11B.1.3510.00003
ORF3a16K16KaaGaaA11B.1.3510.00003
ORF3a16K16MaAgaTg11B.1.3510.00003
ORF3a16K16NaaGaaT11B.1.351.20.000303
ORF3a16K16del1Aag-ag11B.1.351.30.000876
ORF3a16K16NaaGaaT11B.1.36.160.001425
ORF3a16K16delAAG---11B.1.36.170.000494
ORF3a16K16NaaGaaT11B.1.36.170.000494
ORF3a16K16NaaGaaT11B.1.36.180.00042
ORF3a16K16delAAG---11B.1.36.180.00042
ORF3a16K16NaaGaaC11B.1.36.310.001751
ORF3a16K16NaaGaaT11B.1.36.360.000602
ORF3a16K16NaaGaaT11B.1.36.80.001
ORF3a16K16NaaGaaT11B.1.3620.001541
ORF3a16K16NaaGaaT11B.1.3660.004878
ORF3a16K16delAAG---11B.1.3890.001002
ORF3a16K16NaaGaaT11B.1.4000.000429
ORF3a16K16delAAG---11B.1.4220.000812
ORF3a16K16NaaGaaT11B.1.4260.001009
ORF3a16K16MaAgaTg11B.1.4290.000024
ORF3a16K16TaAgaCg11B.1.4290.000024
ORF3a16K16RaAgaGg11B.1.4290.000024
ORF3a16K16EAagGag11B.1.4290.000024
ORF3a16K16KaaGaaA11B.1.438.10.000107
ORF3a16K16RaAgaGg11B.1.438.10.000107
ORF3a16K16NaaGaaT11B.1.4410.009615
ORF3a16K16KaaGaaA11B.1.4480.002625
ORF3a16K16KaaGaaA11B.1.4530.003236
ORF3a16K16KaaGaaA11B.1.4560.003268
ORF3a16K16NaaGaaT11B.1.5170.000427
ORF3a16K16QAagCag11B.1.5260.000024
ORF3a16K16KaaGaaA11B.1.5300.007143
ORF3a16K16MaAgaTg11B.1.5560.007519
ORF3a16K16delAAG---11B.1.5770.000687
ORF3a16K16NaaGaaT11B.1.5780.017857
ORF3a16K16NaaGaaT11B.1.5900.004545
ORF3a16K16delAAG---11B.1.5950.000261
ORF3a16K16NaaGaaT11B.1.5990.00365
ORF3a16K16NaaGaaT11B.1.6090.000479
ORF3a16K16TaAgaCg11B.1.6210.000089
ORF3a16K16delAAG---11B.1.6230.000536
ORF3a16K16delAAG---11B.1.6280.000352
ORF3a16K16delAAG---11B.1.6370.000073
ORF3a16K16delAAG---11B.1.6380.052632
ORF3a16K16NaaGaaT11B.1.90.006173
ORF3a16K16NaaGaaC11B.30.000831
ORF3a16K16delAAG---11B.3.10.001658
ORF3a16K16NaaGaaT11B.3.10.001658
ORF3a16K16NaaGaaT11B.400.000364
ORF3a16K16NaaGaaT11B.550.00295
ORF3a16K16NaaGaaT11B.610.005747
ORF3a16K16NaaGaaT11C.10.002392
ORF3a16K16NaaGaaC11C.360.000911
ORF3a16K16NaaGaaT11C.370.000116
ORF3a16K16KaaGaaA11C.370.000116
ORF3a16K16delAAG---11D.20.000075
ORF3a16K16TaAgaCg11D.30.005917
ORF3a16K16XAagTag11P.1.10.000318
ORF3a16K16RaAgaGg11P.1.140.000048
ORF3a16K16delAAG---11P.1.150.000232
ORF3a16K16MaAgaTg11P.1.170.000162
ORF3a16K16QAagCag11P.20.000187
ORF3a16K16RaAgaGg11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.