CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 15 | L15F | nonsyn | ttG | ttT | 44328 | 43692 | 0.985652 | 25435-25437 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 15 | L15F | ttG | ttT | 43692 | 44328 | All | 0.008357 |
ORF3a | 15 | L15F | ttG | ttT | 40345 | 40373 | B.1.1.7 | 0.036118 |
ORF3a | 15 | L15F | ttG | ttT | 541 | 557 | AY.4 | 0.000842 |
ORF3a | 15 | L15F | ttG | ttT | 419 | 419 | Q.8 | 0.069096 |
ORF3a | 15 | L15F | ttG | ttT | 73 | 306 | B.1.617.2 | 0.000275 |
ORF3a | 15 | L15F | ttG | ttT | 256 | 256 | B.1.599 | 0.934307 |
ORF3a | 15 | L15F | ttG | ttT | 212 | 222 | B.1 | 0.001942 |
ORF3a | 15 | L15F | ttG | ttT | 198 | 207 | B.1.2 | 0.001743 |
ORF3a | 15 | L15F | ttG | ttT | 32 | 187 | AY.43 | 0.000142 |
ORF3a | 15 | L15F | ttG | ttT | 130 | 133 | AY.103 | 0.000807 |
ORF3a | 15 | L15F | ttG | ttT | 131 | 131 | B.1.1.225 | 0.942446 |
ORF3a | 15 | L15F | ttG | ttT | 91 | 91 | B.1.1 | 0.001651 |
ORF3a | 15 | L15F | ttG | ttT | 81 | 83 | AY.20 | 0.003148 |
ORF3a | 15 | L15F | ttG | ttT | 72 | 72 | B.1.160 | 0.002246 |
ORF3a | 15 | L15F | ttG | ttT | 64 | 64 | B.1.1.465 | 1 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 58 | B.1.637 | 0.000146 |
ORF3a | 15 | L15F | ttG | ttT | 56 | 56 | B.1.621 | 0.004957 |
ORF3a | 15 | L15F | ttG | ttT | 50 | 52 | B.1.429 | 0.001176 |
ORF3a | 15 | L15F | ttG | ttT | 46 | 46 | AY.120 | 0.00171 |
ORF3a | 15 | L15F | ttG | ttT | 46 | 46 | P.1 | 0.000725 |
ORF3a | 15 | L15F | ttG | ttT | 17 | 45 | AY.44 | 0.000103 |
ORF3a | 15 | L15F | ttG | ttT | 37 | 37 | B.1.369.1 | 1 |
ORF3a | 15 | L15F | ttG | ttT | 36 | 36 | C.36.3 | 0.02042 |
ORF3a | 15 | L15F | ttG | ttT | 28 | 28 | AY.78 | 0.043143 |
ORF3a | 15 | L15F | ttG | ttT | 28 | 28 | B.1.1.50 | 0.019009 |
ORF3a | 15 | L15F | ttG | ttT | 26 | 26 | B.1.258 | 0.00173 |
ORF3a | 15 | L15F | ttG | ttT | 23 | 23 | B.1.427 | 0.001161 |
ORF3a | 15 | L15F | ttG | ttT | 22 | 22 | AY.26 | 0.000623 |
ORF3a | 15 | L15F | ttG | ttT | 21 | 21 | AY.3 | 0.000209 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 21 | AY.9.1 | 0.000251 |
ORF3a | 15 | L15F | ttG | ttT | 20 | 20 | AY.25 | 0.00012 |
ORF3a | 15 | L15F | ttG | ttT | 20 | 20 | AY.46.5 | 0.003968 |
ORF3a | 15 | L15F | ttG | ttT | 17 | 20 | B.1.177 | 0.000224 |
ORF3a | 15 | L15F | ttG | ttT | 18 | 20 | B.1.351 | 0.000535 |
ORF3a | 15 | L15F | ttG | ttT | 18 | 20 | B.1.526 | 0.000423 |
ORF3a | 15 | L15F | ttG | ttT | 19 | 19 | B.1.177.73 | 0.010759 |
ORF3a | 15 | L15F | ttG | ttT | 17 | 17 | B.1.369 | 0.004849 |
ORF3a | 15 | L15F | ttG | ttT | 16 | 16 | B.1.609 | 0.00767 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 15 | AY.39 | 0.000049 |
ORF3a | 15 | L15F | ttG | ttT | 15 | 15 | B.1.1.519 | 0.000596 |
ORF3a | 15 | L15F | ttG | ttT | 15 | 15 | B.1.160.32 | 0.064378 |
ORF3a | 15 | L15F | ttG | ttT | 13 | 13 | B.1.596 | 0.001133 |
ORF3a | 15 | L15F | ttG | ttT | 13 | 13 | Q.1 | 0.001642 |
ORF3a | 15 | L15F | ttG | ttT | 12 | 12 | B.1.1.70 | 0.004093 |
ORF3a | 15 | L15F | ttG | ttT | 7 | 11 | AY.100 | 0.000322 |
ORF3a | 15 | L15F | ttG | ttT | 11 | 11 | B.1.234 | 0.001451 |
ORF3a | 15 | L15F | ttG | ttT | 8 | 9 | B.1.1.216 | 0.007124 |
ORF3a | 15 | L15F | ttG | ttT | 9 | 9 | B.1.1.222 | 0.001836 |
ORF3a | 15 | L15F | ttG | ttT | 8 | 8 | AY.113 | 0.001139 |
ORF3a | 15 | L15F | ttG | ttT | 8 | 8 | AY.46.6 | 0.000578 |
ORF3a | 15 | L15F | ttG | ttT | 8 | 8 | AY.6 | 0.000329 |
ORF3a | 15 | L15F | ttG | ttT | 8 | 8 | B.1.311 | 0.002197 |
ORF3a | 15 | L15F | ttG | ttT | 8 | 8 | B.1.355 | 0.088889 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 8 | B.1.36 | 0.00073 |
ORF3a | 15 | L15F | ttG | ttT | 8 | 8 | B.1.564 | 0.003407 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 7 | AY.119 | 0.000177 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 7 | AY.46 | 0.000312 |
ORF3a | 15 | L15F | ttG | ttT | 7 | 7 | B.1.221 | 0.000497 |
ORF3a | 15 | L15F | ttG | ttT | 7 | 7 | B.1.525 | 0.000792 |
ORF3a | 15 | L15F | ttG | ttT | 6 | 6 | A.2.5 | 0.002994 |
ORF3a | 15 | L15F | ttG | ttT | 6 | 6 | AY.102 | 0.000159 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 6 | AY.33 | 0.000267 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 6 | AY.5 | 0.000103 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 6 | B.1.177.86 | 0.000917 |
ORF3a | 15 | L15F | ttG | ttT | 6 | 6 | B.1.381 | 0.046875 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 5 | A.23.1 | 0.003521 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 5 | AY.29 | 0.000079 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 5 | AY.34 | 0.000485 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 5 | AY.75 | 0.00028 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 5 | B.1.177.57 | 0.001405 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 5 | B.1.243 | 0.000278 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 5 | B.1.576 | 0.003626 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 5 | B.1.621.1 | 0.002023 |
ORF3a | 15 | L15F | ttG | ttT | 5 | 5 | Q.4 | 0.002274 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | AY.22 | 0.008368 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | AY.37 | 0.001264 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 4 | AY.45 | 0.000243 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | AY.54 | 0.000381 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | AY.58 | 0.00363 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | AY.9 | 0.00027 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | B | 0.000511 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | B.1.466.2 | 0.001565 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | B.1.588 | 0.00364 |
ORF3a | 15 | L15F | ttG | ttT | 4 | 4 | B.6 | 0.00364 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 3 | AY.61 | 0.00021 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | AY.69 | 0.00056 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | AY.92 | 0.000862 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | B.1.1.409 | 0.008499 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | B.1.36.16 | 0.004274 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | B.1.36.8 | 0.003 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | B.1.366 | 0.014634 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | B.1.623 | 0.001609 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | B.1.628 | 0.001057 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | C.37 | 0.000348 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 3 | P.1.14 | 0.000096 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | P.1.15 | 0.000697 |
ORF3a | 15 | L15F | ttG | ttT | 3 | 3 | Q.6 | 0.019868 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | A | 0.000774 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 2 | A.2 | 0.000662 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | AY.106 | 0.00067 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 2 | AY.116 | 0.000287 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 2 | AY.16.1 | 0.00047 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | AY.7.1 | 0.000225 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | B.1.1.192 | 0.004619 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 2 | B.1.214.2 | 0.0006 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | B.1.240 | 0.000431 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | B.1.389 | 0.002004 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | B.1.422 | 0.001625 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | B.1.558 | 0.009132 |
ORF3a | 15 | L15F | ttG | ttT | 2 | 2 | P.2 | 0.000373 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | A.27 | 0.001656 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AL.1 | 0.012987 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.46.3 | 0.000934 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.63 | 0.000387 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.138 | 0.006061 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.406 | 0.006494 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.223 | 0.002778 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.267 | 0.018519 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.301 | 0.005917 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.302 | 0.013333 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.393 | 0.028571 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.516 | 0.001957 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.540 | 0.009709 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.619 | 0.000871 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.1.620 | 0.000946 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | B.38 | 0.02381 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | C.4 | 0.01 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | N.9 | 0.005952 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | P.1.2 | 0.001156 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | P.4 | 0.003802 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | U.3 | 0.003861 |
ORF3a | 15 | L15F | ttG | ttT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|