CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 15

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a15L15FnonsynttGttT44328436920.98565225435-25437
ORF3a15L15FnonsynttGttC443286360.014347625435-25437
ORF3a15L15LsynTtgCtg756273860.97672625435-25437
ORF3a15L15LsynttGttA75621750.02314225435-25437
ORF3a15L15LsynTtGCtT756210.0001322425435-25437
ORF3a15L15deldelTTG---10211021125435-25437
ORF3a15L15SnonsyntTgtCg1291270.98449625435-25437
ORF3a15L15SnonsyntTGtCA12910.0077519425435-25437
ORF3a15L15SnonsyntTGtCT12910.0077519425435-25437
ORF3a15L15VnonsynTtgGtg1181170.99152525435-25437
ORF3a15L15VnonsynTtGGtT11810.0084745825435-25437
ORF3a15L15del1delTtg-tg77620.80519525435-25437
ORF3a15L15del1delttGtt-77150.19480525435-25437
ORF3a15L15del2delTTg--g21150.71428625435-25437
ORF3a15L15del2deltTGt--2160.28571425435-25437
ORF3a15L15MnonsynTtgAtg2020125435-25437
ORF3a15L15WnonsyntTgtGg1010125435-25437
ORF3a15L15InonsynTtGAtT66125435-25437
ORF3a15L15TnonsynTTGACC620.33333325435-25437
ORF3a15L15TnonsynTTGACA620.33333325435-25437
ORF3a15L15TnonsynTTgACg620.33333325435-25437
ORF3a15L15XnonsyntTgtAg320.66666725435-25437
ORF3a15L15XnonsyntTGtAA310.33333325435-25437
ORF3a15L15HnonsynTTGCAC22125435-25437
ORF3a15L15PnonsynTTGCCA210.525435-25437
ORF3a15L15PnonsynTTgCCg210.525435-25437

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a15L15FttGttT4369244328All0.008357
ORF3a15L15FttGttC63644328All0.000122
ORF3a15L15FttGttT4034540373B.1.1.70.036118
ORF3a15L15FttGttC2840373B.1.1.70.000025
ORF3a15L15LTtgCtg73867562All0.001413
ORF3a15L15LttGttA1757562All0.000033
ORF3a15L15LTtGCtT17562All0
ORF3a15L15LTtgCtg71127113AY.40.011069
ORF3a15L15LttGttA17113AY.40.000002
ORF3a15L15delTTG---10211021All0.000195
ORF3a15L15FttGttT541557AY.40.000842
ORF3a15L15FttGttC16557AY.40.000025
ORF3a15L15FttGttT419419Q.80.069096
ORF3a15L15FttGttC233306B.1.617.20.000877
ORF3a15L15FttGttT73306B.1.617.20.000275
ORF3a15L15delTTG---288288B.1.1.70.000258
ORF3a15L15FttGttT256256B.1.5990.934307
ORF3a15L15FttGttT212222B.10.001942
ORF3a15L15FttGttC10222B.10.000092
ORF3a15L15FttGttT198207B.1.20.001743
ORF3a15L15FttGttC9207B.1.20.000079
ORF3a15L15FttGttC155187AY.430.000687
ORF3a15L15FttGttT32187AY.430.000142
ORF3a15L15FttGttT130133AY.1030.000807
ORF3a15L15FttGttC3133AY.1030.000019
ORF3a15L15FttGttT131131B.1.1.2250.942446
ORF3a15L15StTgtCg127129All0.000024
ORF3a15L15StTGtCA1129All0
ORF3a15L15StTGtCT1129All0
ORF3a15L15VTtgGtg117118All0.000022
ORF3a15L15VTtGGtT1118All0
ORF3a15L15delTTG---9898B.1.1.5190.003892
ORF3a15L15FttGttT9191B.1.10.001651
ORF3a15L15delTTG---9090AY.40.00014
ORF3a15L15LttGttA5088B.1.1.70.000045
ORF3a15L15LTtgCtg3788B.1.1.70.000033
ORF3a15L15LTtGCtT188B.1.1.70.000001
ORF3a15L15FttGttT8183AY.200.003148
ORF3a15L15FttGttC283AY.200.000078
ORF3a15L15delTTG---8383AY.440.000505
ORF3a15L15del1Ttg-tg6277All0.000012
ORF3a15L15del1ttGtt-1577All0.000003
ORF3a15L15LttGttA7272AZ.10.062446
ORF3a15L15FttGttT7272B.1.1600.002246
ORF3a15L15FttGttT6464B.1.1.4651
ORF3a15L15FttGttC5658B.1.6370.004092
ORF3a15L15FttGttT258B.1.6370.000146
ORF3a15L15FttGttT5656B.1.6210.004957
ORF3a15L15LTtgCtg5252AY.390.001285
ORF3a15L15FttGttT5052B.1.4290.001176
ORF3a15L15FttGttC252B.1.4290.000047
ORF3a15L15LTtgCtg4852B.1.617.20.000181
ORF3a15L15LttGttA452B.1.617.20.000015
ORF3a15L15FttGttT4646AY.1200.00171
ORF3a15L15FttGttT4646P.10.000725
ORF3a15L15FttGttC2845AY.440.00017
ORF3a15L15FttGttT1745AY.440.000103
ORF3a15L15LTtgCtg4243AY.1030.000261
ORF3a15L15LttGttA143AY.1030.000006
ORF3a15L15del1Ttg-tg3441B.1.1.70.00003
ORF3a15L15del1ttGtt-741B.1.1.70.000006
ORF3a15L15StTgtCg3838B.1.20.000335
ORF3a15L15FttGttT3737B.1.369.11
ORF3a15L15delTTG---3636B.1.1770.000474
ORF3a15L15FttGttT3636C.36.30.02042
ORF3a15L15delTTG---3434P.10.000536
ORF3a15L15FttGttT2828AY.780.043143
ORF3a15L15FttGttT2828B.1.1.500.019009
ORF3a15L15delTTG---2626AY.250.000156
ORF3a15L15StTgtCg2526B.1.1.70.000022
ORF3a15L15StTGtCT126B.1.1.70.000001
ORF3a15L15FttGttT2626B.1.2580.00173
ORF3a15L15VTtgGtg2425B.1.1.70.000021
ORF3a15L15VTtGGtT125B.1.1.70.000001
ORF3a15L15VTtgGtg2424AY.80.014545
ORF3a15L15FttGttT2323B.1.4270.001161
ORF3a15L15FttGttT2222AY.260.000623
ORF3a15L15delTTG---2222B.1.6200.020814
ORF3a15L15del2TTg--g1521All0.000003
ORF3a15L15del2tTGt--621All0.000001
ORF3a15L15FttGttT2121AY.30.000209
ORF3a15L15FttGttC1821AY.9.10.001507
ORF3a15L15FttGttT321AY.9.10.000251
ORF3a15L15MTtgAtg2020All0.000004
ORF3a15L15FttGttT2020AY.250.00012
ORF3a15L15FttGttT2020AY.46.50.003968
ORF3a15L15FttGttT1720B.1.1770.000224
ORF3a15L15FttGttC320B.1.1770.00004
ORF3a15L15FttGttT1820B.1.3510.000535
ORF3a15L15FttGttC220B.1.3510.000059
ORF3a15L15FttGttT1820B.1.5260.000423
ORF3a15L15FttGttC220B.1.5260.000047
ORF3a15L15delTTG---1919B.10.000174
ORF3a15L15FttGttT1919B.1.177.730.010759
ORF3a15L15delTTG---1919B.1.617.20.000072
ORF3a15L15VTtgGtg1818B.10.000165
ORF3a15L15delTTG---1717B.1.20.00015
ORF3a15L15FttGttT1717B.1.3690.004849
ORF3a15L15delTTG---1616AY.1030.000099
ORF3a15L15delTTG---1616B.1.177.210.001224
ORF3a15L15delTTG---1616B.1.2340.002111
ORF3a15L15FttGttT1616B.1.6090.00767
ORF3a15L15FttGttC1315AY.390.000321
ORF3a15L15FttGttT215AY.390.000049
ORF3a15L15FttGttT1515B.1.1.5190.000596
ORF3a15L15FttGttT1515B.1.160.320.064378
ORF3a15L15LTtgCtg1515B.1.617.10.001934
ORF3a15L15FttGttT1313B.1.5960.001133
ORF3a15L15FttGttT1313Q.10.001642
ORF3a15L15FttGttT1212B.1.1.700.004093
ORF3a15L15LTtgCtg812B.1.1770.000105
ORF3a15L15LttGttA412B.1.1770.000053
ORF3a15L15FttGttT711AY.1000.000322
ORF3a15L15FttGttC411AY.1000.000184
ORF3a15L15LttGttA1111AY.98.10.000533
ORF3a15L15FttGttT1111B.1.2340.001451
ORF3a15L15WtTgtGg1010All0.000002
ORF3a15L15StTgtCg910AY.440.000055
ORF3a15L15StTGtCA110AY.440.000006
ORF3a15L15delTTG---1010B.1.1.2140.000555
ORF3a15L15MTtgAtg1010B.1.4290.000235
ORF3a15L15delTTG---99AY.4.50.000967
ORF3a15L15LTtgCtg59B.1.10.000091
ORF3a15L15LttGttA49B.1.10.000073
ORF3a15L15FttGttT89B.1.1.2160.007124
ORF3a15L15FttGttC19B.1.1.2160.00089
ORF3a15L15FttGttT99B.1.1.2220.001836
ORF3a15L15delTTG---99B.1.1.3180.002716
ORF3a15L15FttGttT88AY.1130.001139
ORF3a15L15FttGttT88AY.46.60.000578
ORF3a15L15FttGttT88AY.60.000329
ORF3a15L15del2TTg--g58B.1.1.70.000004
ORF3a15L15del2tTGt--38B.1.1.70.000003
ORF3a15L15FttGttT88B.1.3110.002197
ORF3a15L15FttGttT88B.1.3550.088889
ORF3a15L15FttGttT58B.1.360.00073
ORF3a15L15FttGttC38B.1.360.000438
ORF3a15L15delTTG---88B.1.4290.000188
ORF3a15L15FttGttT88B.1.5640.003407
ORF3a15L15delTTG---88B.1.6230.004292
ORF3a15L15delTTG---88B.1.6300.041885
ORF3a15L15FttGttT57AY.1190.000177
ORF3a15L15FttGttC27AY.1190.000071
ORF3a15L15VTtgGtg77AY.30.00007
ORF3a15L15delTTG---77AY.430.000031
ORF3a15L15LTtgCtg67AY.430.000027
ORF3a15L15LttGttA17AY.430.000004
ORF3a15L15FttGttC47AY.460.000416
ORF3a15L15FttGttT37AY.460.000312
ORF3a15L15delTTG---77B.1.1.3170.002882
ORF3a15L15FttGttT77B.1.2210.000497
ORF3a15L15StTgtCg77B.1.258.170.000728
ORF3a15L15FttGttT77B.1.5250.000792
ORF3a15L15delTTG---77B.1.5400.067961
ORF3a15L15delTTG---77B.1.6210.00062
ORF3a15L15TTTGACC260.111111
ORF3a15L15TTTGACA260.111111
ORF3a15L15TTTgACg260.111111
ORF3a15L15FttGttT66A.2.50.002994
ORF3a15L15ITtGAtT66All0.000001
ORF3a15L15TTTGACA26All0
ORF3a15L15TTTgACg26All0
ORF3a15L15TTTGACC26All0
ORF3a15L15FttGttT66AY.1020.000159
ORF3a15L15FttGttT46AY.330.000267
ORF3a15L15FttGttC26AY.330.000134
ORF3a15L15VTtgGtg66AY.40.000009
ORF3a15L15StTgtCg66AY.40.000009
ORF3a15L15FttGttT56AY.50.000103
ORF3a15L15FttGttC16AY.50.000021
ORF3a15L15del1Ttg-tg66B0.000767
ORF3a15L15delTTG---66B.1.10.000109
ORF3a15L15MTtgAtg66B.1.1.70.000005
ORF3a15L15FttGttT56B.1.177.860.000917
ORF3a15L15FttGttC16B.1.177.860.000183
ORF3a15L15FttGttT66B.1.3810.046875
ORF3a15L15FttGttT55A.23.10.003521
ORF3a15L15FttGttC55AY.10.001979
ORF3a15L15LTtgCtg45AY.250.000024
ORF3a15L15LttGttA15AY.250.000006
ORF3a15L15delTTG---55AY.290.000079
ORF3a15L15FttGttT55AY.290.000079
ORF3a15L15FttGttT55AY.340.000485
ORF3a15L15FttGttT55AY.750.00028
ORF3a15L15LTtgCtg35B.10.000027
ORF3a15L15LttGttA25B.10.000018
ORF3a15L15VTtgGtg55B.1.10.000091
ORF3a15L15ITtGAtT55B.1.1.980.092593
ORF3a15L15delTTG---55B.1.177.350.003455
ORF3a15L15FttGttT55B.1.177.570.001405
ORF3a15L15delTTG---55B.1.177.860.000917
ORF3a15L15LTtgCtg45B.1.20.000035
ORF3a15L15LttGttA15B.1.20.000009
ORF3a15L15FttGttT45B.1.2430.000278
ORF3a15L15FttGttC15B.1.2430.00007
ORF3a15L15FttGttT45B.1.5760.003626
ORF3a15L15FttGttC15B.1.5760.000907
ORF3a15L15delTTG---55B.1.6090.002397
ORF3a15L15FttGttT45B.1.621.10.002023
ORF3a15L15FttGttC15B.1.621.10.000506
ORF3a15L15FttGttT55Q.40.002274
ORF3a15L15FttGttT44AY.220.008368
ORF3a15L15FttGttT44AY.370.001264
ORF3a15L15FttGttT24AY.450.000243
ORF3a15L15FttGttC24AY.450.000243
ORF3a15L15FttGttT44AY.540.000381
ORF3a15L15FttGttT44AY.580.00363
ORF3a15L15FttGttT44AY.90.00027
ORF3a15L15delTTG---44AY.9.20.000147
ORF3a15L15FttGttT44B0.000511
ORF3a15L15StTgtCg44B.1.10.000073
ORF3a15L15VTtgGtg44B.1.1.2220.000816
ORF3a15L15delTTG---44B.1.1.2880.007663
ORF3a15L15delTTG---44B.1.1.5230.00625
ORF3a15L15LTtgCtg44B.1.1600.000125
ORF3a15L15VTtgGtg44B.1.1770.000053
ORF3a15L15FttGttT44B.1.177.210.000306
ORF3a15L15delTTG---44B.1.177.40.000844
ORF3a15L15delTTG---44B.1.2210.000284
ORF3a15L15FttGttT44B.1.36.290.002069
ORF3a15L15del1Ttg-tg44B.1.4290.000094
ORF3a15L15FttGttT44B.1.466.20.001565
ORF3a15L15FttGttT44B.1.5880.00364
ORF3a15L15FttGttT44B.60.00364
ORF3a15L15XtTgtAg23All0
ORF3a15L15XtTGtAA13All0
ORF3a15L15delTTG---33AY.1180.000188
ORF3a15L15LTtgCtg33AY.140.000264
ORF3a15L15StTgtCg33AY.330.0002
ORF3a15L15del2TTg--g23AY.40.000003
ORF3a15L15del2tTGt--13AY.40.000002
ORF3a15L15LTtgCtg33AY.410.000882
ORF3a15L15LTtgCtg23AY.420.00008
ORF3a15L15LttGttA13AY.420.00004
ORF3a15L15FttGttC33AY.46.10.00308
ORF3a15L15StTgtCg33AY.46.60.000217
ORF3a15L15delTTG---33AY.470.000093
ORF3a15L15delTTG---33AY.50.000062
ORF3a15L15FttGttT23AY.610.00021
ORF3a15L15FttGttC13AY.610.000105
ORF3a15L15FttGttT33AY.690.00056
ORF3a15L15LttGttA23AY.90.000135
ORF3a15L15LTtgCtg13AY.90.000068
ORF3a15L15FttGttT33AY.920.000862
ORF3a15L15StTgtCg33B.10.000027
ORF3a15L15WtTgtGg33B.10.000027
ORF3a15L15FttGttT33B.1.1.3060.001315
ORF3a15L15FttGttT33B.1.1.330.001263
ORF3a15L15FttGttC33B.1.1.3690.001339
ORF3a15L15FttGttT33B.1.1.4090.008499
ORF3a15L15StTgtCg33B.1.177.540.001819
ORF3a15L15delTTG---33B.1.2580.0002
ORF3a15L15FttGttT33B.1.36.160.004274
ORF3a15L15FttGttT33B.1.36.80.003
ORF3a15L15FttGttT33B.1.3660.014634
ORF3a15L15StTgtCg33B.1.4290.000071
ORF3a15L15LTtgCtg33B.1.4710.008197
ORF3a15L15delTTG---33B.1.5060.071429
ORF3a15L15VTtgGtg33B.1.5100.078947
ORF3a15L15FttGttT33B.1.617.10.000387
ORF3a15L15StTgtCg33B.1.617.20.000011
ORF3a15L15FttGttT33B.1.6230.001609
ORF3a15L15FttGttT33B.1.6280.001057
ORF3a15L15delTTG---33B.1.6370.000219
ORF3a15L15LTtgCtg33B.1.6380.157895
ORF3a15L15FttGttT33C.370.000348
ORF3a15L15LTtgCtg23C.370.000232
ORF3a15L15LttGttA13C.370.000116
ORF3a15L15FttGttT23P.1.140.000096
ORF3a15L15FttGttC13P.1.140.000048
ORF3a15L15FttGttT33P.1.150.000697
ORF3a15L15FttGttT33Q.60.019868
ORF3a15L15MTtgAtg220.111111
ORF3a15L15HTTGCAC220.111111
ORF3a15L15FttGttT22A0.000774
ORF3a15L15FttGttT12A.20.000662
ORF3a15L15FttGttC12A.20.000662
ORF3a15L15VTtgGtg22AD.20.000438
ORF3a15L15HTTGCAC22All0
ORF3a15L15PTTGCCA12All0
ORF3a15L15PTTgCCg12All0
ORF3a15L15LTtgCtg12AY.1020.000027
ORF3a15L15LttGttA12AY.1020.000027
ORF3a15L15LttGttA22AY.1040.003968
ORF3a15L15FttGttT22AY.1060.00067
ORF3a15L15delTTG---22AY.1110.000366
ORF3a15L15FttGttC12AY.1160.000287
ORF3a15L15FttGttT12AY.1160.000287
ORF3a15L15FttGttT22AY.1170.000169
ORF3a15L15del1Ttg-tg22AY.1170.000169
ORF3a15L15FttGttT22AY.1210.000271
ORF3a15L15FttGttT12AY.16.10.00047
ORF3a15L15FttGttC12AY.16.10.00047
ORF3a15L15FttGttC22AY.230.000139
ORF3a15L15delTTG---22AY.270.000129
ORF3a15L15StTgtCg22AY.30.00002
ORF3a15L15del1ttGtt-12AY.40.000002
ORF3a15L15del1Ttg-tg12AY.40.000002
ORF3a15L15LTtgCtg22AY.4.20.000043
ORF3a15L15LTtgCtg22AY.4.40.000818
ORF3a15L15FttGttT22AY.420.00008
ORF3a15L15LTtgCtg22AY.450.000243
ORF3a15L15VTtgGtg22AY.46.50.000397
ORF3a15L15StTgtCg22AY.470.000062
ORF3a15L15LTtgCtg22AY.60.000082
ORF3a15L15delTTG---22AY.60.000082
ORF3a15L15FttGttC22AY.650.001066
ORF3a15L15FttGttT22AY.7.10.000225
ORF3a15L15delTTG---22AY.710.00095
ORF3a15L15delTTG---22AY.760.009662
ORF3a15L15FttGttT22AY.98.10.000097
ORF3a15L15delTTG---22AY.98.10.000097
ORF3a15L15VTtgGtg22B.1.1.1330.016949
ORF3a15L15delTTG---22B.1.1.1890.003026
ORF3a15L15FttGttT22B.1.1.1920.004619
ORF3a15L15FttGttT22B.1.1.2910.001485
ORF3a15L15FttGttT22B.1.1.3180.000604
ORF3a15L15FttGttT22B.1.1.3720.001377
ORF3a15L15LTtgCtg22B.1.1.570.022989
ORF3a15L15WtTgtGg22B.1.1.70.000002
ORF3a15L15delTTG---22B.1.177.100.001756
ORF3a15L15delTTG---22B.1.177.120.000303
ORF3a15L15delTTG---22B.1.177.600.000437
ORF3a15L15StTgtCg22B.1.177.600.000437
ORF3a15L15FttGttT22B.1.177.820.000955
ORF3a15L15delTTG---22B.1.177.830.002963
ORF3a15L15del2TTg--g22B.1.20.000018
ORF3a15L15FttGttC12B.1.214.20.0006
ORF3a15L15FttGttT12B.1.214.20.0006
ORF3a15L15VTtgGtg22B.1.2340.000264
ORF3a15L15FttGttT22B.1.2400.000431
ORF3a15L15LTtgCtg12B.1.258.140.00098
ORF3a15L15LttGttA12B.1.258.140.00098
ORF3a15L15delTTG---22B.1.258.30.00335
ORF3a15L15delTTG---22B.1.3510.000059
ORF3a15L15FttGttT22B.1.3890.002004
ORF3a15L15FttGttT22B.1.4220.001625
ORF3a15L15delTTG---22B.1.4270.000101
ORF3a15L15delTTG---22B.1.5250.000226
ORF3a15L15FttGttT22B.1.5580.009132
ORF3a15L15VTtgGtg22B.1.617.20.000008
ORF3a15L15del2TTg--g22B.1.6210.000177
ORF3a15L15StTgtCg22P.10.000032
ORF3a15L15delTTG---22P.1.90.009615
ORF3a15L15FttGttT22P.20.000373
ORF3a15L15delTTG---22R.10.00018
ORF3a15L15delTTG---22U.30.007722
ORF3a15L15LttGttA11A.20.000662
ORF3a15L15delTTG---11A.2.50.000499
ORF3a15L15FttGttT11A.270.001656
ORF3a15L15FttGttC11AE.20.058824
ORF3a15L15LTtgCtg11AH.30.003802
ORF3a15L15FttGttT11AL.10.012987
ORF3a15L15delTTG---11AY.1020.000027
ORF3a15L15XtTGtAA11AY.1030.000006
ORF3a15L15del1Ttg-tg11AY.1030.000006
ORF3a15L15del2tTGt--11AY.1030.000006
ORF3a15L15delTTG---11AY.1050.000643
ORF3a15L15FttGttT11AY.1100.000113
ORF3a15L15delTTG---11AY.1170.000085
ORF3a15L15delTTG---11AY.1190.000035
ORF3a15L15LTtgCtg11AY.1200.000037
ORF3a15L15del1ttGtt-11AY.1200.000037
ORF3a15L15FttGttT11AY.140.000088
ORF3a15L15delTTG---11AY.140.000088
ORF3a15L15StTgtCg11AY.140.000088
ORF3a15L15FttGttT11AY.160.00038
ORF3a15L15delTTG---11AY.200.000039
ORF3a15L15delTTG---11AY.230.00007
ORF3a15L15StTgtCg11AY.250.000006
ORF3a15L15LttGttA11AY.260.000028
ORF3a15L15StTgtCg11AY.260.000028
ORF3a15L15delTTG---11AY.260.000028
ORF3a15L15FttGttC11AY.270.000065
ORF3a15L15StTgtCg11AY.290.000016
ORF3a15L15LttGttA11AY.30.00001
ORF3a15L15delTTG---11AY.30.00001
ORF3a15L15del1Ttg-tg11AY.30.00001
ORF3a15L15del2TTg--g11AY.3.10.000085
ORF3a15L15del1Ttg-tg11AY.3.10.000085
ORF3a15L15delTTG---11AY.3.10.000085
ORF3a15L15FttGttT11AY.300.000396
ORF3a15L15delTTG---11AY.330.000067
ORF3a15L15FttGttT11AY.350.000233
ORF3a15L15LttGttA11AY.350.000233
ORF3a15L15FttGttT11AY.360.000148
ORF3a15L15LttGttA11AY.370.000316
ORF3a15L15delTTG---11AY.390.000025
ORF3a15L15delTTG---11AY.39.10.00004
ORF3a15L15del1Ttg-tg11AY.39.10.00004
ORF3a15L15FttGttT11AY.39.10.00004
ORF3a15L15FttGttT11AY.4.20.000022
ORF3a15L15LTtgCtg11AY.4.2.10.000149
ORF3a15L15FttGttC11AY.4.50.000107
ORF3a15L15FttGttC11AY.400.000964
ORF3a15L15del2TTg--g11AY.410.000294
ORF3a15L15VTtgGtg11AY.430.000004
ORF3a15L15PTTGCCA11AY.430.000004
ORF3a15L15StTgtCg11AY.430.000004
ORF3a15L15WtTgtGg11AY.440.000006
ORF3a15L15delTTG---11AY.46.20.000635
ORF3a15L15FttGttT11AY.46.30.000934
ORF3a15L15FttGttT11AY.46.40.000165
ORF3a15L15LttGttA11AY.470.000031
ORF3a15L15LTtgCtg11AY.490.003195
ORF3a15L15del2TTg--g11AY.50.000021
ORF3a15L15del1ttGtt-11AY.50.000021
ORF3a15L15StTgtCg11AY.50.000021
ORF3a15L15FttGttT11AY.5.40.000277
ORF3a15L15delTTG---11AY.5.40.000277
ORF3a15L15FttGttC11AY.590.00053
ORF3a15L15delTTG---11AY.600.000938
ORF3a15L15StTgtCg11AY.610.000105
ORF3a15L15FttGttT11AY.630.000387
ORF3a15L15FttGttT11AY.640.000595
ORF3a15L15LttGttA11AY.690.000187
ORF3a15L15del1Ttg-tg11AY.810.001992
ORF3a15L15LttGttA11AY.880.000884
ORF3a15L15del1ttGtt-11AY.90.000068
ORF3a15L15FttGttT11AY.9.20.000037
ORF3a15L15FttGttT11AY.950.000761
ORF3a15L15FttGttC11AY.960.002075
ORF3a15L15StTgtCg11AY.980.000079
ORF3a15L15FttGttT11AY.980.000079
ORF3a15L15delTTG---11AY.980.000079
ORF3a15L15WtTgtGg11AY.98.10.000048
ORF3a15L15FttGttT11AY.990.001049
ORF3a15L15delTTG---11AY.990.001049
ORF3a15L15FttGttT11AY.99.20.000092
ORF3a15L15FttGttT11AZ.10.000867
ORF3a15L15LttGttA11AZ.20.000821
ORF3a15L15delTTG---11B0.000128
ORF3a15L15del1Ttg-tg11B.10.000009
ORF3a15L15XtTgtAg11B.10.000009
ORF3a15L15XtTgtAg11B.1.10.000018
ORF3a15L15FttGttT11B.1.1.10.000327
ORF3a15L15delTTG---11B.1.1.1330.008475
ORF3a15L15FttGttT11B.1.1.1380.006061
ORF3a15L15FttGttT11B.1.1.1570.000913
ORF3a15L15FttGttC11B.1.1.1700.001247
ORF3a15L15FttGttT11B.1.1.1760.000439
ORF3a15L15StTgtCg11B.1.1.1980.001468
ORF3a15L15LTtgCtg11B.1.1.2140.000055
ORF3a15L15LTtgCtg11B.1.1.2160.00089
ORF3a15L15MTtgAtg11B.1.1.2200.001859
ORF3a15L15VTtgGtg11B.1.1.2200.001859
ORF3a15L15del1Ttg-tg11B.1.1.2220.000204
ORF3a15L15delTTG---11B.1.1.2340.012048
ORF3a15L15delTTG---11B.1.1.2360.006897
ORF3a15L15FttGttC11B.1.1.250.000569
ORF3a15L15FttGttT11B.1.1.2690.001353
ORF3a15L15FttGttT11B.1.1.280.000311
ORF3a15L15delTTG---11B.1.1.280.000311
ORF3a15L15LttGttA11B.1.1.280.000311
ORF3a15L15FttGttT11B.1.1.2840.000107
ORF3a15L15del1Ttg-tg11B.1.1.3010.001179
ORF3a15L15LTtgCtg11B.1.1.3180.000302
ORF3a15L15FttGttT11B.1.1.3260.001761
ORF3a15L15delTTG---11B.1.1.3510.002793
ORF3a15L15delTTG---11B.1.1.3690.000446
ORF3a15L15delTTG---11B.1.1.370.000193
ORF3a15L15delTTG---11B.1.1.390.00051
ORF3a15L15FttGttT11B.1.1.390.00051
ORF3a15L15FttGttT11B.1.1.4060.006494
ORF3a15L15delTTG---11B.1.1.4090.002833
ORF3a15L15delTTG---11B.1.1.4320.001266
ORF3a15L15VTtgGtg11B.1.1.4860.001577
ORF3a15L15LTtgCtg11B.1.1.500.000679
ORF3a15L15ITtGAtT11B.1.1.520.012195
ORF3a15L15FttGttT11B.1.1.540.003021
ORF3a15L15delTTG---11B.1.1.550.012987
ORF3a15L15LttGttA11B.1.1.630.000386
ORF3a15L15PTTgCCg11B.1.1.70.000001
ORF3a15L15FttGttT11B.1.1.80.003584
ORF3a15L15delTTG---11B.1.1.980.018519
ORF3a15L15FttGttT11B.1.1110.001175
ORF3a15L15delTTG---11B.1.1280.000635
ORF3a15L15delTTG---11B.1.1420.002899
ORF3a15L15FttGttT11B.1.1470.000756
ORF3a15L15FttGttT11B.1.160.140.002119
ORF3a15L15delTTG---11B.1.160.160.000929
ORF3a15L15delTTG---11B.1.160.230.004831
ORF3a15L15delTTG---11B.1.160.260.002421
ORF3a15L15del1ttGtt-11B.1.1770.000013
ORF3a15L15MTtgAtg11B.1.1770.000013
ORF3a15L15del2TTg--g11B.1.1770.000013
ORF3a15L15delTTG---11B.1.177.190.001431
ORF3a15L15FttGttT11B.1.177.540.000606
ORF3a15L15FttGttT11B.1.177.560.000668
ORF3a15L15StTgtCg11B.1.177.560.000668
ORF3a15L15delTTG---11B.1.177.570.000281
ORF3a15L15delTTG---11B.1.177.580.001332
ORF3a15L15del1ttGtt-11B.1.177.60.000977
ORF3a15L15FttGttT11B.1.177.600.000218
ORF3a15L15delTTG---11B.1.177.690.001484
ORF3a15L15del1ttGtt-11B.1.177.70.000165
ORF3a15L15LttGttA11B.1.177.70.000165
ORF3a15L15FttGttT11B.1.177.70.000165
ORF3a15L15delTTG---11B.1.177.760.002494
ORF3a15L15FttGttT11B.1.177.810.000189
ORF3a15L15delTTG---11B.1.1950.005025
ORF3a15L15del1Ttg-tg11B.1.20.000009
ORF3a15L15WtTgtGg11B.1.20.000009
ORF3a15L15VTtgGtg11B.1.20.000009
ORF3a15L15delTTG---11B.1.221.10.002907
ORF3a15L15FttGttT11B.1.2230.002778
ORF3a15L15FttGttT11B.1.2390.001221
ORF3a15L15StTgtCg11B.1.2400.000216
ORF3a15L15FttGttT11B.1.2410.000812
ORF3a15L15del1Ttg-tg11B.1.2430.00007
ORF3a15L15VTtgGtg11B.1.2430.00007
ORF3a15L15LttGttA11B.1.2580.000067
ORF3a15L15del1Ttg-tg11B.1.258.170.000104
ORF3a15L15FttGttT11B.1.258.170.000104
ORF3a15L15FttGttT11B.1.2600.003344
ORF3a15L15FttGttT11B.1.2670.018519
ORF3a15L15FttGttT11B.1.3010.005917
ORF3a15L15FttGttT11B.1.3020.013333
ORF3a15L15LttGttA11B.1.3110.000275
ORF3a15L15FttGttT11B.1.3240.001605
ORF3a15L15FttGttT11B.1.3490.000715
ORF3a15L15del1Ttg-tg11B.1.3510.00003
ORF3a15L15LTtgCtg11B.1.3510.00003
ORF3a15L15FttGttT11B.1.36.100.004785
ORF3a15L15del2tTGt--11B.1.36.170.000494
ORF3a15L15delTTG---11B.1.36.180.00042
ORF3a15L15FttGttC11B.1.36.180.00042
ORF3a15L15VTtgGtg11B.1.36.180.00042
ORF3a15L15FttGttT11B.1.36.220.001208
ORF3a15L15FttGttT11B.1.36.380.001642
ORF3a15L15delTTG---11B.1.3630.012987
ORF3a15L15LTtgCtg11B.1.3660.004878
ORF3a15L15FttGttT11B.1.3670.000792
ORF3a15L15LTtgCtg11B.1.3670.000792
ORF3a15L15delTTG---11B.1.3690.000285
ORF3a15L15VTtgGtg11B.1.3690.000285
ORF3a15L15FttGttC11B.1.3710.001122
ORF3a15L15FttGttT11B.1.3750.00082
ORF3a15L15FttGttT11B.1.3930.028571
ORF3a15L15LTtgCtg11B.1.4000.000429
ORF3a15L15delTTG---11B.1.4080.00369
ORF3a15L15delTTG---11B.1.4090.000781
ORF3a15L15delTTG---11B.1.4220.000812
ORF3a15L15LTtgCtg11B.1.4290.000024
ORF3a15L15FttGttT11B.1.4620.007246
ORF3a15L15FttGttT11B.1.5030.002488
ORF3a15L15FttGttT11B.1.5160.001957
ORF3a15L15FttGttT11B.1.5170.000427
ORF3a15L15delTTG---11B.1.5260.000024
ORF3a15L15LttGttA11B.1.5260.000024
ORF3a15L15FttGttT11B.1.5400.009709
ORF3a15L15FttGttT11B.1.5610.000397
ORF3a15L15FttGttT11B.1.5680.001111
ORF3a15L15delTTG---11B.1.5770.000687
ORF3a15L15VTtgGtg11B.1.5820.000491
ORF3a15L15FttGttT11B.1.5950.000261
ORF3a15L15WtTgtGg11B.1.5950.000261
ORF3a15L15delTTG---11B.1.5950.000261
ORF3a15L15StTgtCg11B.1.5960.000087
ORF3a15L15WtTgtGg11B.1.617.20.000004
ORF3a15L15FttGttT11B.1.6190.000871
ORF3a15L15FttGttT11B.1.6200.000946
ORF3a15L15del1ttGtt-11B.1.6210.000089
ORF3a15L15LTtgCtg11B.1.6230.000536
ORF3a15L15delTTG---11B.1.6280.000352
ORF3a15L15delTTG---11B.1.6380.052632
ORF3a15L15delTTG---11B.3.10.001658
ORF3a15L15FttGttT11B.380.02381
ORF3a15L15FttGttC11C.160.00106
ORF3a15L15LTtgCtg11C.300.001727
ORF3a15L15del1Ttg-tg11C.36.30.000567
ORF3a15L15del1Ttg-tg11C.370.000116
ORF3a15L15FttGttT11C.40.01
ORF3a15L15delTTG---11D.20.000075
ORF3a15L15FttGttC11N.50.001767
ORF3a15L15FttGttT11N.90.005952
ORF3a15L15LTtgCtg11P.10.000016
ORF3a15L15VTtgGtg11P.10.000016
ORF3a15L15FttGttT11P.1.100.000269
ORF3a15L15FttGttT11P.1.120.000484
ORF3a15L15VTtgGtg11P.1.140.000048
ORF3a15L15delTTG---11P.1.150.000232
ORF3a15L15VTtgGtg11P.1.160.000374
ORF3a15L15FttGttT11P.1.160.000374
ORF3a15L15FttGttT11P.1.20.001156
ORF3a15L15del1Ttg-tg11P.1.40.000977
ORF3a15L15delTTG---11P.20.000187
ORF3a15L15FttGttT11P.40.003802
ORF3a15L15delTTG---11Q.40.000455
ORF3a15L15VTtgGtg11Q.80.000165
ORF3a15L15LTtgCtg11Q.80.000165
ORF3a15L15delTTG---11Q.80.000165
ORF3a15L15FttGttT11U.30.003861
ORF3a15L15FttGttT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.