CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 149 | W149C | nonsyn | tgG | tgT | 3002 | 2998 | 0.998668 | 25837-25839 | |
ORF3a | 149 | W149C | nonsyn | tgG | tgC | 3002 | 4 | 0.00133245 | 25837-25839 | |
ORF3a | 149 | W149L | nonsyn | tGg | tTg | 335 | 335 | 1 | 25837-25839 | |
ORF3a | 149 | W149R | nonsyn | Tgg | Cgg | 211 | 106 | 0.50237 | 25837-25839 | |
ORF3a | 149 | W149R | nonsyn | Tgg | Agg | 211 | 105 | 0.49763 | 25837-25839 | |
ORF3a | 149 | W149G | nonsyn | Tgg | Ggg | 161 | 160 | 0.993789 | 25837-25839 | |
ORF3a | 149 | W149G | nonsyn | TgG | GgA | 161 | 1 | 0.00621118 | 25837-25839 | |
ORF3a | 149 | W149del | del | TGG | --- | 76 | 76 | 1 | 25837-25839 | |
ORF3a | 149 | W149X | nonsyn | tgG | tgA | 17 | 12 | 0.705882 | 25837-25839 | |
ORF3a | 149 | W149X | nonsyn | tGg | tAg | 17 | 5 | 0.294118 | 25837-25839 | |
ORF3a | 149 | W149S | nonsyn | tGg | tCg | 3 | 3 | 1 | 25837-25839 | |
ORF3a | 149 | W149del1 | del | tGg | t-g | 3 | 2 | 0.666667 | 25837-25839 | |
ORF3a | 149 | W149del1 | del | Tgg | -gg | 3 | 1 | 0.333333 | 25837-25839 | |
ORF3a | 149 | W149del2 | del | TGg | --g | 1 | 1 | 1 | 25837-25839 | |
ORF3a | 149 | W149Y | nonsyn | tGG | tAT | 1 | 1 | 1 | 25837-25839 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 149 | W149C | tgG | tgT | 2998 | 3002 | All | 0.000573 |
ORF3a | 149 | W149C | tgG | tgC | 4 | 3002 | All | 0.000001 |
ORF3a | 149 | W149C | tgG | tgT | 964 | 964 | B.1.1.420 | 0.969819 |
ORF3a | 149 | W149C | tgG | tgT | 653 | 654 | AY.4 | 0.001016 |
ORF3a | 149 | W149C | tgG | tgC | 1 | 654 | AY.4 | 0.000002 |
ORF3a | 149 | W149C | tgG | tgT | 492 | 492 | P.1 | 0.007751 |
ORF3a | 149 | W149L | tGg | tTg | 335 | 335 | All | 0.000064 |
ORF3a | 149 | W149R | Tgg | Cgg | 106 | 211 | All | 0.00002 |
ORF3a | 149 | W149R | Tgg | Agg | 105 | 211 | All | 0.00002 |
ORF3a | 149 | W149C | tgG | tgT | 205 | 205 | B.1.1.7 | 0.000184 |
ORF3a | 149 | W149G | Tgg | Ggg | 160 | 161 | All | 0.000031 |
ORF3a | 149 | W149G | TgG | GgA | 1 | 161 | All | 0 |
ORF3a | 149 | W149G | Tgg | Ggg | 116 | 116 | AY.9 | 0.007841 |
ORF3a | 149 | W149C | tgG | tgT | 92 | 92 | B.1 | 0.000843 |
ORF3a | 149 | W149L | tGg | tTg | 90 | 90 | B.1.1.7 | 0.000081 |
ORF3a | 149 | W149C | tgG | tgT | 82 | 82 | B.1.177.60 | 0.017912 |
ORF3a | 149 | W149C | tgG | tgT | 81 | 81 | B.1.525 | 0.009166 |
ORF3a | 149 | W149del | TGG | --- | 76 | 76 | All | 0.000015 |
ORF3a | 149 | W149C | tgG | tgT | 66 | 66 | B.1.1 | 0.001197 |
ORF3a | 149 | W149L | tGg | tTg | 64 | 64 | AY.4 | 0.0001 |
ORF3a | 149 | W149C | tgG | tgT | 60 | 60 | B.1.177.79 | 0.140515 |
ORF3a | 149 | W149R | Tgg | Agg | 52 | 52 | P.1.14 | 0.002486 |
ORF3a | 149 | W149R | Tgg | Agg | 34 | 50 | B.1.1.7 | 0.00003 |
ORF3a | 149 | W149R | Tgg | Cgg | 16 | 50 | B.1.1.7 | 0.000014 |
ORF3a | 149 | W149C | tgG | tgT | 39 | 39 | B.1.617.2 | 0.000147 |
ORF3a | 149 | W149C | tgG | tgT | 32 | 32 | B.1.2 | 0.000282 |
ORF3a | 149 | W149C | tgG | tgT | 23 | 23 | AY.25 | 0.000138 |
ORF3a | 149 | W149C | tgG | tgT | 22 | 22 | B.1.1.70 | 0.007503 |
ORF3a | 149 | W149del | TGG | --- | 20 | 20 | B.1.1.7 | 0.000018 |
ORF3a | 149 | W149L | tGg | tTg | 20 | 20 | B.1.617.2 | 0.000075 |
ORF3a | 149 | W149R | Tgg | Cgg | 18 | 18 | B.1.1.434 | 0.006274 |
ORF3a | 149 | W149X | tgG | tgA | 12 | 17 | All | 0.000002 |
ORF3a | 149 | W149X | tGg | tAg | 5 | 17 | All | 0.000001 |
ORF3a | 149 | W149C | tgG | tgT | 17 | 17 | AY.43 | 0.000075 |
ORF3a | 149 | W149R | Tgg | Cgg | 14 | 14 | B.1.258 | 0.000932 |
ORF3a | 149 | W149C | tgG | tgT | 13 | 13 | B.1.1.135 | 0.061033 |
ORF3a | 149 | W149C | tgG | tgT | 12 | 12 | AY.23 | 0.000837 |
ORF3a | 149 | W149L | tGg | tTg | 11 | 11 | AY.4.2 | 0.000239 |
ORF3a | 149 | W149L | tGg | tTg | 9 | 9 | AY.44 | 0.000055 |
ORF3a | 149 | W149G | Tgg | Ggg | 8 | 9 | B.1.1.7 | 0.000007 |
ORF3a | 149 | W149G | TgG | GgA | 1 | 9 | B.1.1.7 | 0.000001 |
ORF3a | 149 | W149C | tgG | tgT | 8 | 8 | AY.103 | 0.00005 |
ORF3a | 149 | W149L | tGg | tTg | 8 | 8 | AY.111 | 0.001465 |
ORF3a | 149 | W149C | tgG | tgT | 8 | 8 | AY.44 | 0.000049 |
ORF3a | 149 | W149L | tGg | tTg | 8 | 8 | B.1 | 0.000073 |
ORF3a | 149 | W149L | tGg | tTg | 8 | 8 | B.1.1.306 | 0.003507 |
ORF3a | 149 | W149L | tGg | tTg | 8 | 8 | B.1.177 | 0.000105 |
ORF3a | 149 | W149G | Tgg | Ggg | 8 | 8 | B.1.36.29 | 0.004139 |
ORF3a | 149 | W149L | tGg | tTg | 7 | 7 | AY.3 | 0.00007 |
ORF3a | 149 | W149C | tgG | tgT | 7 | 7 | AY.3 | 0.00007 |
ORF3a | 149 | W149R | Tgg | Cgg | 5 | 7 | AY.4 | 0.000008 |
ORF3a | 149 | W149R | Tgg | Agg | 2 | 7 | AY.4 | 0.000003 |
ORF3a | 149 | W149R | Tgg | Cgg | 7 | 7 | AY.54 | 0.000667 |
ORF3a | 149 | W149R | Tgg | Cgg | 7 | 7 | B.1 | 0.000064 |
ORF3a | 149 | W149C | tgG | tgT | 7 | 7 | B.1.1.398 | 0.022581 |
ORF3a | 149 | W149C | tgG | tgT | 6 | 6 | AY.120 | 0.000223 |
ORF3a | 149 | W149G | Tgg | Ggg | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 149 | W149del | TGG | --- | 6 | 6 | B.1 | 0.000055 |
ORF3a | 149 | W149L | tGg | tTg | 6 | 6 | B.1.2 | 0.000053 |
ORF3a | 149 | W149L | tGg | tTg | 6 | 6 | B.1.525 | 0.000679 |
ORF3a | 149 | W149C | tgG | tgT | 5 | 5 | AY.20 | 0.000194 |
ORF3a | 149 | W149del | TGG | --- | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 149 | W149L | tGg | tTg | 5 | 5 | AY.75 | 0.00028 |
ORF3a | 149 | W149del | TGG | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 149 | W149C | tgG | tgT | 5 | 5 | B.1.416.1 | 0.007812 |
ORF3a | 149 | W149L | tGg | tTg | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 149 | W149C | tgG | tgT | 4 | 5 | B.1.564 | 0.001704 |
ORF3a | 149 | W149C | tgG | tgC | 1 | 5 | B.1.564 | 0.000426 |
ORF3a | 149 | W149C | tgG | tgT | 5 | 5 | P.1.12 | 0.00242 |
ORF3a | 149 | W149L | tGg | tTg | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 149 | W149L | tGg | tTg | 4 | 4 | AY.113 | 0.00057 |
ORF3a | 149 | W149X | tgG | tgA | 3 | 4 | AY.4 | 0.000005 |
ORF3a | 149 | W149X | tGg | tAg | 1 | 4 | AY.4 | 0.000002 |
ORF3a | 149 | W149G | Tgg | Ggg | 4 | 4 | AY.44 | 0.000024 |
ORF3a | 149 | W149C | tgG | tgT | 4 | 4 | B.1.351 | 0.000119 |
ORF3a | 149 | W149C | tgG | tgT | 4 | 4 | B.1.596 | 0.000349 |
ORF3a | 149 | W149R | Tgg | Cgg | 4 | 4 | B.1.609 | 0.001918 |
ORF3a | 149 | W149G | Tgg | Ggg | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 149 | W149L | tGg | tTg | 4 | 4 | P.1 | 0.000063 |
ORF3a | 149 | W149L | tGg | tTg | 3 | 3 | A | 0.001161 |
ORF3a | 149 | W149C | tgG | tgT | 3 | 3 | A.2.5 | 0.001497 |
ORF3a | 149 | W149S | tGg | tCg | 3 | 3 | All | 0.000001 |
ORF3a | 149 | W149del1 | tGg | t-g | 2 | 3 | All | 0 |
ORF3a | 149 | W149del1 | Tgg | -gg | 1 | 3 | All | 0 |
ORF3a | 149 | W149R | Tgg | Cgg | 2 | 3 | AY.103 | 0.000012 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 3 | AY.103 | 0.000006 |
ORF3a | 149 | W149L | tGg | tTg | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 149 | W149L | tGg | tTg | 3 | 3 | AY.33 | 0.0002 |
ORF3a | 149 | W149G | Tgg | Ggg | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 149 | W149L | tGg | tTg | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 149 | W149C | tgG | tgT | 3 | 3 | AY.99.2 | 0.000276 |
ORF3a | 149 | W149L | tGg | tTg | 3 | 3 | B.1.1.222 | 0.000612 |
ORF3a | 149 | W149C | tgG | tgT | 3 | 3 | B.1.1.409 | 0.008499 |
ORF3a | 149 | W149R | Tgg | Cgg | 2 | 3 | B.1.177 | 0.000026 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 3 | B.1.177 | 0.000013 |
ORF3a | 149 | W149R | Tgg | Cgg | 2 | 3 | B.1.2 | 0.000018 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 3 | B.1.2 | 0.000009 |
ORF3a | 149 | W149L | tGg | tTg | 3 | 3 | B.1.36.1 | 0.003421 |
ORF3a | 149 | W149L | tGg | tTg | 3 | 3 | B.1.524 | 0.004219 |
ORF3a | 149 | W149C | tgG | tgT | 3 | 3 | C.16 | 0.003181 |
ORF3a | 149 | W149R | Tgg | Cgg | 3 | 3 | P.1 | 0.000047 |
ORF3a | 149 | W149del | TGG | --- | 2 | 2 | 0.111111 | |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | A.2.4 | 0.006734 |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | AT.1 | 0.010256 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 149 | W149R | Tgg | Cgg | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 149 | W149G | Tgg | Ggg | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 2 | AY.25 | 0.000006 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 2 | AY.25 | 0.000006 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | AY.32 | 0.001065 |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 149 | W149del | TGG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 2 | AY.44 | 0.000006 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 2 | AY.44 | 0.000006 |
ORF3a | 149 | W149R | Tgg | Agg | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 2 | AY.6 | 0.000041 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 2 | AY.6 | 0.000041 |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | AZ.2 | 0.001642 |
ORF3a | 149 | W149R | Tgg | Cgg | 2 | 2 | B.1.1.214 | 0.000111 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 149 | W149del | TGG | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | B.1.1.83 | 0.00542 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | B.1.110.3 | 0.001437 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF3a | 149 | W149del | TGG | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 149 | W149X | tgG | tgA | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | B.1.400 | 0.000858 |
ORF3a | 149 | W149R | Tgg | Cgg | 2 | 2 | B.1.400 | 0.000858 |
ORF3a | 149 | W149del | TGG | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 149 | W149del | TGG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 2 | B.1.617.2 | 0.000004 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 2 | B.1.617.2 | 0.000004 |
ORF3a | 149 | W149del | TGG | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 149 | W149del | TGG | --- | 2 | 2 | P.1 | 0.000032 |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | P.1.1 | 0.000635 |
ORF3a | 149 | W149L | tGg | tTg | 2 | 2 | P.1.14 | 0.000096 |
ORF3a | 149 | W149del | TGG | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 149 | W149C | tgG | tgT | 2 | 2 | P.4 | 0.007605 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | 0.055556 | |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | 0.055556 | |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | A | 0.000387 |
ORF3a | 149 | W149X | tGg | tAg | 1 | 1 | A | 0.000387 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | A.1 | 0.000282 |
ORF3a | 149 | W149X | tgG | tgA | 1 | 1 | A.2 | 0.000662 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | A.2.2 | 0.001689 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 149 | W149Y | tGG | tAT | 1 | 1 | All | 0 |
ORF3a | 149 | W149del2 | TGg | --g | 1 | 1 | All | 0 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 149 | W149X | tGg | tAg | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 149 | W149G | Tgg | Ggg | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 149 | W149del1 | Tgg | -gg | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 149 | W149del1 | tGg | t-g | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 149 | W149G | Tgg | Ggg | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 149 | W149S | tGg | tCg | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 149 | W149Y | tGG | tAT | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 149 | W149S | tGg | tCg | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 149 | W149X | tgG | tgA | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 149 | W149X | tgG | tgA | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 149 | W149G | Tgg | Ggg | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 1 | AY.80 | 0.001129 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 149 | W149X | tgG | tgA | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 149 | W149G | Tgg | Ggg | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 149 | W149C | tgG | tgC | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B | 0.000128 |
ORF3a | 149 | W149X | tgG | tgA | 1 | 1 | B.1 | 0.000009 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 149 | W149del1 | tGg | t-g | 1 | 1 | B.1.1.101 | 0.01 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 1 | B.1.1.152 | 0.04 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.200 | 0.007463 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 149 | W149G | Tgg | Ggg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.254 | 0.011236 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.1.351 | 0.002793 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 1 | B.1.1.374 | 0.002375 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.1.389 | 0.006061 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.417 | 0.002703 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.1.56 | 0.017857 |
ORF3a | 149 | W149S | tGg | tCg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 149 | W149X | tGg | tAg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.12 | 0.008 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.160.14 | 0.002119 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 149 | W149G | Tgg | Ggg | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.329 | 0.000608 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.361 | 0.001289 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 149 | W149G | Tgg | Ggg | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 149 | W149G | Tgg | Ggg | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 149 | W149X | tGg | tAg | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 149 | W149R | Tgg | Cgg | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.590 | 0.004545 |
ORF3a | 149 | W149C | tgG | tgC | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 149 | W149del2 | TGg | --g | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 149 | W149X | tgG | tgA | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 1 | C.16 | 0.00106 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | C.36 | 0.000911 |
ORF3a | 149 | W149X | tgG | tgA | 1 | 1 | D.2 | 0.000075 |
ORF3a | 149 | W149G | Tgg | Ggg | 1 | 1 | P.1 | 0.000016 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 149 | W149L | tGg | tTg | 1 | 1 | P.1.9 | 0.004808 |
ORF3a | 149 | W149R | Tgg | Agg | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 149 | W149del | TGG | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 149 | W149C | tgG | tgT | 1 | 1 | U.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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