CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 149

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a149W149CnonsyntgGtgT300229980.99866825837-25839
ORF3a149W149CnonsyntgGtgC300240.0013324525837-25839
ORF3a149W149LnonsyntGgtTg335335125837-25839
ORF3a149W149RnonsynTggCgg2111060.5023725837-25839
ORF3a149W149RnonsynTggAgg2111050.4976325837-25839
ORF3a149W149GnonsynTggGgg1611600.99378925837-25839
ORF3a149W149GnonsynTgGGgA16110.0062111825837-25839
ORF3a149W149deldelTGG---7676125837-25839
ORF3a149W149XnonsyntgGtgA17120.70588225837-25839
ORF3a149W149XnonsyntGgtAg1750.29411825837-25839
ORF3a149W149SnonsyntGgtCg33125837-25839
ORF3a149W149del1deltGgt-g320.66666725837-25839
ORF3a149W149del1delTgg-gg310.33333325837-25839
ORF3a149W149del2delTGg--g11125837-25839
ORF3a149W149YnonsyntGGtAT11125837-25839

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a149W149CtgGtgT29983002All0.000573
ORF3a149W149CtgGtgC43002All0.000001
ORF3a149W149CtgGtgT964964B.1.1.4200.969819
ORF3a149W149CtgGtgT653654AY.40.001016
ORF3a149W149CtgGtgC1654AY.40.000002
ORF3a149W149CtgGtgT492492P.10.007751
ORF3a149W149LtGgtTg335335All0.000064
ORF3a149W149RTggCgg106211All0.00002
ORF3a149W149RTggAgg105211All0.00002
ORF3a149W149CtgGtgT205205B.1.1.70.000184
ORF3a149W149GTggGgg160161All0.000031
ORF3a149W149GTgGGgA1161All0
ORF3a149W149GTggGgg116116AY.90.007841
ORF3a149W149CtgGtgT9292B.10.000843
ORF3a149W149LtGgtTg9090B.1.1.70.000081
ORF3a149W149CtgGtgT8282B.1.177.600.017912
ORF3a149W149CtgGtgT8181B.1.5250.009166
ORF3a149W149delTGG---7676All0.000015
ORF3a149W149CtgGtgT6666B.1.10.001197
ORF3a149W149LtGgtTg6464AY.40.0001
ORF3a149W149CtgGtgT6060B.1.177.790.140515
ORF3a149W149RTggAgg5252P.1.140.002486
ORF3a149W149RTggAgg3450B.1.1.70.00003
ORF3a149W149RTggCgg1650B.1.1.70.000014
ORF3a149W149CtgGtgT3939B.1.617.20.000147
ORF3a149W149CtgGtgT3232B.1.20.000282
ORF3a149W149CtgGtgT2323AY.250.000138
ORF3a149W149CtgGtgT2222B.1.1.700.007503
ORF3a149W149delTGG---2020B.1.1.70.000018
ORF3a149W149LtGgtTg2020B.1.617.20.000075
ORF3a149W149RTggCgg1818B.1.1.4340.006274
ORF3a149W149XtgGtgA1217All0.000002
ORF3a149W149XtGgtAg517All0.000001
ORF3a149W149CtgGtgT1717AY.430.000075
ORF3a149W149RTggCgg1414B.1.2580.000932
ORF3a149W149CtgGtgT1313B.1.1.1350.061033
ORF3a149W149CtgGtgT1212AY.230.000837
ORF3a149W149LtGgtTg1111AY.4.20.000239
ORF3a149W149LtGgtTg99AY.440.000055
ORF3a149W149GTggGgg89B.1.1.70.000007
ORF3a149W149GTgGGgA19B.1.1.70.000001
ORF3a149W149CtgGtgT88AY.1030.00005
ORF3a149W149LtGgtTg88AY.1110.001465
ORF3a149W149CtgGtgT88AY.440.000049
ORF3a149W149LtGgtTg88B.10.000073
ORF3a149W149LtGgtTg88B.1.1.3060.003507
ORF3a149W149LtGgtTg88B.1.1770.000105
ORF3a149W149GTggGgg88B.1.36.290.004139
ORF3a149W149LtGgtTg77AY.30.00007
ORF3a149W149CtgGtgT77AY.30.00007
ORF3a149W149RTggCgg57AY.40.000008
ORF3a149W149RTggAgg27AY.40.000003
ORF3a149W149RTggCgg77AY.540.000667
ORF3a149W149RTggCgg77B.10.000064
ORF3a149W149CtgGtgT77B.1.1.3980.022581
ORF3a149W149CtgGtgT66AY.1200.000223
ORF3a149W149GTggGgg66AY.430.000027
ORF3a149W149delTGG---66B.10.000055
ORF3a149W149LtGgtTg66B.1.20.000053
ORF3a149W149LtGgtTg66B.1.5250.000679
ORF3a149W149CtgGtgT55AY.200.000194
ORF3a149W149delTGG---55AY.430.000022
ORF3a149W149LtGgtTg55AY.750.00028
ORF3a149W149delTGG---55B.1.1770.000066
ORF3a149W149CtgGtgT55B.1.416.10.007812
ORF3a149W149LtGgtTg55B.1.4290.000118
ORF3a149W149CtgGtgT45B.1.5640.001704
ORF3a149W149CtgGtgC15B.1.5640.000426
ORF3a149W149CtgGtgT55P.1.120.00242
ORF3a149W149LtGgtTg44AY.1030.000025
ORF3a149W149LtGgtTg44AY.1130.00057
ORF3a149W149XtgGtgA34AY.40.000005
ORF3a149W149XtGgtAg14AY.40.000002
ORF3a149W149GTggGgg44AY.440.000024
ORF3a149W149CtgGtgT44B.1.3510.000119
ORF3a149W149CtgGtgT44B.1.5960.000349
ORF3a149W149RTggCgg44B.1.6090.001918
ORF3a149W149GTggGgg44B.1.617.20.000015
ORF3a149W149LtGgtTg44P.10.000063
ORF3a149W149LtGgtTg33A0.001161
ORF3a149W149CtgGtgT33A.2.50.001497
ORF3a149W149StGgtCg33All0.000001
ORF3a149W149del1tGgt-g23All0
ORF3a149W149del1Tgg-gg13All0
ORF3a149W149RTggCgg23AY.1030.000012
ORF3a149W149RTggAgg13AY.1030.000006
ORF3a149W149LtGgtTg33AY.250.000018
ORF3a149W149LtGgtTg33AY.330.0002
ORF3a149W149GTggGgg33AY.40.000005
ORF3a149W149LtGgtTg33AY.430.000013
ORF3a149W149CtgGtgT33AY.99.20.000276
ORF3a149W149LtGgtTg33B.1.1.2220.000612
ORF3a149W149CtgGtgT33B.1.1.4090.008499
ORF3a149W149RTggCgg23B.1.1770.000026
ORF3a149W149RTggAgg13B.1.1770.000013
ORF3a149W149RTggCgg23B.1.20.000018
ORF3a149W149RTggAgg13B.1.20.000009
ORF3a149W149LtGgtTg33B.1.36.10.003421
ORF3a149W149LtGgtTg33B.1.5240.004219
ORF3a149W149CtgGtgT33C.160.003181
ORF3a149W149RTggCgg33P.10.000047
ORF3a149W149delTGG---220.111111
ORF3a149W149CtgGtgT22A.2.40.006734
ORF3a149W149CtgGtgT22AT.10.010256
ORF3a149W149LtGgtTg22AY.1020.000053
ORF3a149W149RTggCgg22AY.1180.000125
ORF3a149W149LtGgtTg22AY.1190.000071
ORF3a149W149GTggGgg22AY.130.000322
ORF3a149W149CtgGtgT22AY.130.000322
ORF3a149W149RTggCgg12AY.250.000006
ORF3a149W149RTggAgg12AY.250.000006
ORF3a149W149LtGgtTg22AY.3.10.000171
ORF3a149W149LtGgtTg22AY.320.001065
ORF3a149W149CtgGtgT22AY.390.000049
ORF3a149W149LtGgtTg22AY.390.000049
ORF3a149W149delTGG---22AY.40.000003
ORF3a149W149RTggCgg12AY.440.000006
ORF3a149W149RTggAgg12AY.440.000006
ORF3a149W149RTggAgg22AY.46.20.001271
ORF3a149W149LtGgtTg22AY.50.000041
ORF3a149W149RTggCgg12AY.60.000041
ORF3a149W149RTggAgg12AY.60.000041
ORF3a149W149CtgGtgT22AY.850.000854
ORF3a149W149LtGgtTg22AY.980.000158
ORF3a149W149CtgGtgT22AZ.20.001642
ORF3a149W149RTggCgg22B.1.1.2140.000111
ORF3a149W149LtGgtTg22B.1.1.2940.002532
ORF3a149W149delTGG---22B.1.1.3150.016949
ORF3a149W149LtGgtTg22B.1.1.700.000682
ORF3a149W149CtgGtgT22B.1.1.830.00542
ORF3a149W149LtGgtTg22B.1.110.30.001437
ORF3a149W149LtGgtTg22B.1.1600.000062
ORF3a149W149CtgGtgT22B.1.177.210.000153
ORF3a149W149delTGG---22B.1.177.40.000422
ORF3a149W149XtgGtgA22B.1.20.000018
ORF3a149W149LtGgtTg22B.1.4000.000858
ORF3a149W149RTggCgg22B.1.4000.000858
ORF3a149W149delTGG---22B.1.5250.000226
ORF3a149W149delTGG---22B.1.617.20.000008
ORF3a149W149RTggCgg12B.1.617.20.000004
ORF3a149W149RTggAgg12B.1.617.20.000004
ORF3a149W149delTGG---22B.1.6210.000177
ORF3a149W149delTGG---22P.10.000032
ORF3a149W149CtgGtgT22P.1.10.000635
ORF3a149W149LtGgtTg22P.1.140.000096
ORF3a149W149delTGG---22P.1.150.000465
ORF3a149W149CtgGtgT22P.40.007605
ORF3a149W149RTggCgg110.055556
ORF3a149W149CtgGtgT110.055556
ORF3a149W149delTGG---11A0.000387
ORF3a149W149XtGgtAg11A0.000387
ORF3a149W149RTggCgg11A.10.000282
ORF3a149W149XtgGtgA11A.20.000662
ORF3a149W149RTggCgg11A.2.20.001689
ORF3a149W149delTGG---11AD.20.000219
ORF3a149W149YtGGtAT11All0
ORF3a149W149del2TGg--g11All0
ORF3a149W149CtgGtgT11AY.1000.000046
ORF3a149W149XtGgtAg11AY.1030.000006
ORF3a149W149CtgGtgT11AY.1060.000335
ORF3a149W149CtgGtgT11AY.1080.001103
ORF3a149W149CtgGtgT11AY.1130.000142
ORF3a149W149LtGgtTg11AY.1160.000287
ORF3a149W149CtgGtgT11AY.1160.000287
ORF3a149W149LtGgtTg11AY.1180.000063
ORF3a149W149GTggGgg11AY.1180.000063
ORF3a149W149CtgGtgT11AY.140.000088
ORF3a149W149del1Tgg-gg11AY.200.000039
ORF3a149W149LtGgtTg11AY.200.000039
ORF3a149W149CtgGtgT11AY.240.000431
ORF3a149W149del1tGgt-g11AY.250.000006
ORF3a149W149delTGG---11AY.250.000006
ORF3a149W149CtgGtgT11AY.260.000028
ORF3a149W149LtGgtTg11AY.290.000016
ORF3a149W149delTGG---11AY.290.000016
ORF3a149W149CtgGtgT11AY.290.000016
ORF3a149W149GTggGgg11AY.29.10.000221
ORF3a149W149StGgtCg11AY.300.000396
ORF3a149W149CtgGtgT11AY.330.000067
ORF3a149W149LtGgtTg11AY.360.000148
ORF3a149W149RTggCgg11AY.390.000025
ORF3a149W149delTGG---11AY.390.000025
ORF3a149W149RTggCgg11AY.39.10.00004
ORF3a149W149YtGGtAT11AY.40.000002
ORF3a149W149StGgtCg11AY.40.000002
ORF3a149W149LtGgtTg11AY.4.2.10.000149
ORF3a149W149CtgGtgT11AY.4.40.000409
ORF3a149W149delTGG---11AY.4.50.000107
ORF3a149W149CtgGtgT11AY.460.000104
ORF3a149W149CtgGtgT11AY.50.000021
ORF3a149W149LtGgtTg11AY.540.000095
ORF3a149W149CtgGtgT11AY.590.00053
ORF3a149W149XtgGtgA11AY.590.00053
ORF3a149W149CtgGtgT11AY.60.000041
ORF3a149W149CtgGtgT11AY.610.000105
ORF3a149W149RTggCgg11AY.640.000595
ORF3a149W149delTGG---11AY.680.000274
ORF3a149W149XtgGtgA11AY.690.000187
ORF3a149W149LtGgtTg11AY.70.000196
ORF3a149W149LtGgtTg11AY.700.000209
ORF3a149W149GTggGgg11AY.75.10.00018
ORF3a149W149RTggAgg11AY.800.001129
ORF3a149W149CtgGtgT11AY.90.000068
ORF3a149W149XtgGtgA11AY.980.000079
ORF3a149W149GTggGgg11AY.980.000079
ORF3a149W149CtgGtgT11AY.980.000079
ORF3a149W149CtgGtgC11AY.98.10.000048
ORF3a149W149delTGG---11B0.000128
ORF3a149W149XtgGtgA11B.10.000009
ORF3a149W149RTggCgg11B.1.10.000018
ORF3a149W149del1tGgt-g11B.1.1.1010.01
ORF3a149W149RTggAgg11B.1.1.1520.04
ORF3a149W149delTGG---11B.1.1.1700.001247
ORF3a149W149CtgGtgT11B.1.1.1740.003378
ORF3a149W149CtgGtgT11B.1.1.2000.007463
ORF3a149W149CtgGtgT11B.1.1.2220.000204
ORF3a149W149GTggGgg11B.1.1.250.000569
ORF3a149W149LtGgtTg11B.1.1.250.000569
ORF3a149W149CtgGtgT11B.1.1.2540.011236
ORF3a149W149LtGgtTg11B.1.1.2910.000742
ORF3a149W149CtgGtgT11B.1.1.2940.001266
ORF3a149W149RTggCgg11B.1.1.3060.000438
ORF3a149W149CtgGtgT11B.1.1.3070.002532
ORF3a149W149CtgGtgT11B.1.1.3480.000796
ORF3a149W149LtGgtTg11B.1.1.3510.002793
ORF3a149W149RTggCgg11B.1.1.370.000193
ORF3a149W149RTggAgg11B.1.1.3740.002375
ORF3a149W149RTggCgg11B.1.1.3890.006061
ORF3a149W149CtgGtgT11B.1.1.390.00051
ORF3a149W149LtGgtTg11B.1.1.3980.003226
ORF3a149W149delTGG---11B.1.1.4090.002833
ORF3a149W149CtgGtgT11B.1.1.4110.014706
ORF3a149W149CtgGtgT11B.1.1.4170.002703
ORF3a149W149CtgGtgT11B.1.1.560.017857
ORF3a149W149StGgtCg11B.1.1.70.000001
ORF3a149W149XtGgtAg11B.1.1.70.000001
ORF3a149W149CtgGtgT11B.1.120.008
ORF3a149W149delTGG---11B.1.1400.018868
ORF3a149W149CtgGtgT11B.1.1600.000031
ORF3a149W149RTggCgg11B.1.1600.000031
ORF3a149W149delTGG---11B.1.1600.000031
ORF3a149W149LtGgtTg11B.1.160.140.002119
ORF3a149W149delTGG---11B.1.160.230.004831
ORF3a149W149CtgGtgT11B.1.1770.000013
ORF3a149W149delTGG---11B.1.177.110.001698
ORF3a149W149delTGG---11B.1.177.510.004566
ORF3a149W149delTGG---11B.1.177.620.001192
ORF3a149W149RTggCgg11B.1.177.70.000165
ORF3a149W149LtGgtTg11B.1.177.810.000189
ORF3a149W149RTggCgg11B.1.177.810.000189
ORF3a149W149GTggGgg11B.1.20.000009
ORF3a149W149RTggAgg11B.1.2210.000071
ORF3a149W149delTGG---11B.1.2210.000071
ORF3a149W149CtgGtgT11B.1.2430.00007
ORF3a149W149CtgGtgT11B.1.2580.000067
ORF3a149W149CtgGtgT11B.1.3290.000608
ORF3a149W149RTggCgg11B.1.3510.00003
ORF3a149W149RTggCgg11B.1.360.000146
ORF3a149W149CtgGtgT11B.1.36.290.000517
ORF3a149W149CtgGtgT11B.1.3610.001289
ORF3a149W149CtgGtgT11B.1.3690.000285
ORF3a149W149LtGgtTg11B.1.3690.000285
ORF3a149W149LtGgtTg11B.1.3910.001127
ORF3a149W149CtgGtgT11B.1.3990.001934
ORF3a149W149CtgGtgT11B.1.4000.000429
ORF3a149W149delTGG---11B.1.416.10.001563
ORF3a149W149RTggAgg11B.1.416.10.001563
ORF3a149W149LtGgtTg11B.1.4270.00005
ORF3a149W149GTggGgg11B.1.4620.007246
ORF3a149W149GTggGgg11B.1.4990.00105
ORF3a149W149CtgGtgT11B.1.5090.000866
ORF3a149W149XtGgtAg11B.1.5090.000866
ORF3a149W149RTggCgg11B.1.5240.001406
ORF3a149W149CtgGtgT11B.1.5650.00081
ORF3a149W149CtgGtgT11B.1.5900.004545
ORF3a149W149CtgGtgC11B.1.5950.000261
ORF3a149W149delTGG---11B.1.5960.000087
ORF3a149W149LtGgtTg11B.1.5960.000087
ORF3a149W149CtgGtgT11B.1.6090.000479
ORF3a149W149RTggAgg11B.1.617.10.000129
ORF3a149W149delTGG---11B.1.617.10.000129
ORF3a149W149del2TGg--g11B.1.617.20.000004
ORF3a149W149XtgGtgA11B.1.6370.000073
ORF3a149W149delTGG---11B.1.6380.052632
ORF3a149W149RTggAgg11C.160.00106
ORF3a149W149CtgGtgT11C.360.000911
ORF3a149W149XtgGtgA11D.20.000075
ORF3a149W149GTggGgg11P.10.000016
ORF3a149W149LtGgtTg11P.1.120.000484
ORF3a149W149CtgGtgT11P.1.140.000048
ORF3a149W149CtgGtgT11P.1.160.000374
ORF3a149W149LtGgtTg11P.1.90.004808
ORF3a149W149RTggAgg11Q.10.000126
ORF3a149W149delTGG---11Q.40.000455
ORF3a149W149CtgGtgT11Q.80.000165
ORF3a149W149CtgGtgT11U.10.012821