CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 148 | C148C | syn | tgC | tgT | 2476 | 2476 | 1 | 25834-25836 | |
ORF3a | 148 | C148F | nonsyn | tGc | tTc | 178 | 178 | 1 | 25834-25836 | |
ORF3a | 148 | C148del | del | TGC | --- | 78 | 78 | 1 | 25834-25836 | |
ORF3a | 148 | C148S | nonsyn | Tgc | Agc | 71 | 45 | 0.633803 | 25834-25836 | |
ORF3a | 148 | C148S | nonsyn | tGc | tCc | 71 | 26 | 0.366197 | 25834-25836 | |
ORF3a | 148 | C148Y | nonsyn | tGc | tAc | 50 | 50 | 1 | 25834-25836 | |
ORF3a | 148 | C148del1 | del | Tgc | -gc | 32 | 28 | 0.875 | 25834-25836 | |
ORF3a | 148 | C148del1 | del | tGc | t-c | 32 | 2 | 0.0625 | 25834-25836 | |
ORF3a | 148 | C148del1 | del | tgC | tg- | 32 | 2 | 0.0625 | 25834-25836 | |
ORF3a | 148 | C148R | nonsyn | Tgc | Cgc | 13 | 13 | 1 | 25834-25836 | |
ORF3a | 148 | C148X | nonsyn | tgC | tgA | 8 | 8 | 1 | 25834-25836 | |
ORF3a | 148 | C148G | nonsyn | Tgc | Ggc | 7 | 7 | 1 | 25834-25836 | |
ORF3a | 148 | C148W | nonsyn | tgC | tgG | 6 | 6 | 1 | 25834-25836 | |
ORF3a | 148 | C148del2 | del | TGc | --c | 3 | 3 | 1 | 25834-25836 | |
ORF3a | 148 | C148L | nonsyn | tGC | tTG | 1 | 1 | 1 | 25834-25836 | |
ORF3a | 148 | C148N | nonsyn | TGc | AAc | 1 | 1 | 1 | 25834-25836 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 148 | C148C | tgC | tgT | 2476 | 2476 | All | 0.000474 |
ORF3a | 148 | C148C | tgC | tgT | 564 | 564 | AY.47 | 0.017543 |
ORF3a | 148 | C148C | tgC | tgT | 381 | 381 | B.1.1.7 | 0.000341 |
ORF3a | 148 | C148C | tgC | tgT | 227 | 227 | AY.43 | 0.001006 |
ORF3a | 148 | C148F | tGc | tTc | 178 | 178 | All | 0.000034 |
ORF3a | 148 | C148C | tgC | tgT | 163 | 163 | AY.44 | 0.000992 |
ORF3a | 148 | C148C | tgC | tgT | 115 | 115 | B.1.617.2 | 0.000433 |
ORF3a | 148 | C148C | tgC | tgT | 110 | 110 | AY.4 | 0.000171 |
ORF3a | 148 | C148del | TGC | --- | 78 | 78 | All | 0.000015 |
ORF3a | 148 | C148S | Tgc | Agc | 45 | 71 | All | 0.000009 |
ORF3a | 148 | C148S | tGc | tCc | 26 | 71 | All | 0.000005 |
ORF3a | 148 | C148C | tgC | tgT | 66 | 66 | AY.25 | 0.000397 |
ORF3a | 148 | C148C | tgC | tgT | 60 | 60 | B.1.177.59 | 0.967742 |
ORF3a | 148 | C148C | tgC | tgT | 51 | 51 | P.1.10 | 0.013743 |
ORF3a | 148 | C148Y | tGc | tAc | 50 | 50 | All | 0.00001 |
ORF3a | 148 | C148C | tgC | tgT | 49 | 49 | AY.103 | 0.000304 |
ORF3a | 148 | C148C | tgC | tgT | 46 | 46 | AY.98.1 | 0.002228 |
ORF3a | 148 | C148F | tGc | tTc | 43 | 43 | B.1.351 | 0.001278 |
ORF3a | 148 | C148C | tgC | tgT | 41 | 41 | B.1 | 0.000376 |
ORF3a | 148 | C148C | tgC | tgT | 35 | 35 | AY.39 | 0.000865 |
ORF3a | 148 | C148F | tGc | tTc | 35 | 35 | B.1.1.7 | 0.000031 |
ORF3a | 148 | C148C | tgC | tgT | 33 | 33 | B.1.2 | 0.000291 |
ORF3a | 148 | C148del1 | Tgc | -gc | 28 | 32 | All | 0.000005 |
ORF3a | 148 | C148del1 | tGc | t-c | 2 | 32 | All | 0 |
ORF3a | 148 | C148del1 | tgC | tg- | 2 | 32 | All | 0 |
ORF3a | 148 | C148F | tGc | tTc | 31 | 31 | AY.4 | 0.000048 |
ORF3a | 148 | C148C | tgC | tgT | 31 | 31 | B.1.427 | 0.001565 |
ORF3a | 148 | C148C | tgC | tgT | 21 | 21 | AY.53 | 0.006038 |
ORF3a | 148 | C148del | TGC | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF3a | 148 | C148C | tgC | tgT | 18 | 18 | B.1.351 | 0.000535 |
ORF3a | 148 | C148C | tgC | tgT | 17 | 17 | B.1.1 | 0.000308 |
ORF3a | 148 | C148C | tgC | tgT | 17 | 17 | B.1.177 | 0.000224 |
ORF3a | 148 | C148C | tgC | tgT | 15 | 15 | B.1.351.2 | 0.004539 |
ORF3a | 148 | C148Y | tGc | tAc | 14 | 14 | B.1.1.7 | 0.000013 |
ORF3a | 148 | C148R | Tgc | Cgc | 13 | 13 | All | 0.000002 |
ORF3a | 148 | C148C | tgC | tgT | 13 | 13 | AY.20 | 0.000505 |
ORF3a | 148 | C148C | tgC | tgT | 13 | 13 | B.1.525 | 0.001471 |
ORF3a | 148 | C148S | tGc | tCc | 13 | 13 | B.1.619.1 | 0.008339 |
ORF3a | 148 | C148C | tgC | tgT | 12 | 12 | AY.119 | 0.000424 |
ORF3a | 148 | C148S | Tgc | Agc | 11 | 12 | B.1.1.7 | 0.00001 |
ORF3a | 148 | C148S | tGc | tCc | 1 | 12 | B.1.1.7 | 0.000001 |
ORF3a | 148 | C148C | tgC | tgT | 12 | 12 | P.1 | 0.000189 |
ORF3a | 148 | C148C | tgC | tgT | 11 | 11 | AY.2 | 0.003917 |
ORF3a | 148 | C148C | tgC | tgT | 11 | 11 | B.1.621 | 0.000974 |
ORF3a | 148 | C148del1 | Tgc | -gc | 9 | 10 | B.1.1.7 | 0.000008 |
ORF3a | 148 | C148del1 | tgC | tg- | 1 | 10 | B.1.1.7 | 0.000001 |
ORF3a | 148 | C148C | tgC | tgT | 10 | 10 | B.1.36.18 | 0.004202 |
ORF3a | 148 | C148C | tgC | tgT | 9 | 9 | AY.102 | 0.000239 |
ORF3a | 148 | C148C | tgC | tgT | 9 | 9 | B.1.429 | 0.000212 |
ORF3a | 148 | C148X | tgC | tgA | 8 | 8 | All | 0.000002 |
ORF3a | 148 | C148C | tgC | tgT | 8 | 8 | AY.16 | 0.003037 |
ORF3a | 148 | C148C | tgC | tgT | 8 | 8 | AY.39.1 | 0.000317 |
ORF3a | 148 | C148S | Tgc | Agc | 8 | 8 | AY.4 | 0.000012 |
ORF3a | 148 | C148F | tGc | tTc | 8 | 8 | B.1.617.2 | 0.00003 |
ORF3a | 148 | C148G | Tgc | Ggc | 7 | 7 | All | 0.000001 |
ORF3a | 148 | C148C | tgC | tgT | 7 | 7 | AY.120 | 0.00026 |
ORF3a | 148 | C148C | tgC | tgT | 7 | 7 | AY.3 | 0.00007 |
ORF3a | 148 | C148F | tGc | tTc | 7 | 7 | AY.39 | 0.000173 |
ORF3a | 148 | C148del | TGC | --- | 7 | 7 | B.1 | 0.000064 |
ORF3a | 148 | C148C | tgC | tgT | 7 | 7 | B.1.1.446 | 0.538462 |
ORF3a | 148 | C148C | tgC | tgT | 7 | 7 | D.2 | 0.000525 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | A.2.5.2 | 0.009434 |
ORF3a | 148 | C148W | tgC | tgG | 6 | 6 | All | 0.000001 |
ORF3a | 148 | C148F | tGc | tTc | 6 | 6 | AY.118 | 0.000376 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | AY.26 | 0.00017 |
ORF3a | 148 | C148del1 | Tgc | -gc | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | AY.75 | 0.000336 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | AY.93 | 0.001638 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | B.1.1.216 | 0.005343 |
ORF3a | 148 | C148C | tgC | tgT | 6 | 6 | B.1.1.306 | 0.00263 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | AY.100 | 0.00023 |
ORF3a | 148 | C148F | tGc | tTc | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 148 | C148del | TGC | --- | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | AY.6 | 0.000206 |
ORF3a | 148 | C148F | tGc | tTc | 5 | 5 | B.1 | 0.000046 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.1.519 | 0.000199 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.177.32 | 0.006748 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.232 | 0.002687 |
ORF3a | 148 | C148C | tgC | tgT | 5 | 5 | B.1.241 | 0.004058 |
ORF3a | 148 | C148Y | tGc | tAc | 5 | 5 | P.1 | 0.000079 |
ORF3a | 148 | C148S | Tgc | Agc | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF3a | 148 | C148R | Tgc | Cgc | 4 | 4 | AY.44 | 0.000024 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | AY.5 | 0.000083 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | AY.99.2 | 0.000369 |
ORF3a | 148 | C148del | TGC | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | B.1.258.17 | 0.000416 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | B.1.36 | 0.000584 |
ORF3a | 148 | C148C | tgC | tgT | 4 | 4 | C.16 | 0.004242 |
ORF3a | 148 | C148Y | tGc | tAc | 3 | 3 | A.1 | 0.000846 |
ORF3a | 148 | C148del2 | TGc | --c | 3 | 3 | All | 0.000001 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.109 | 0.002219 |
ORF3a | 148 | C148F | tGc | tTc | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.27 | 0.000194 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.29 | 0.000047 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 148 | C148F | tGc | tTc | 3 | 3 | AY.4.2 | 0.000065 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.4.2 | 0.000065 |
ORF3a | 148 | C148S | tGc | tCc | 3 | 3 | AY.59 | 0.001589 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | AY.61 | 0.000314 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.1.401 | 0.2 |
ORF3a | 148 | C148R | Tgc | Cgc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.160 | 0.000094 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.160.30 | 0.008929 |
ORF3a | 148 | C148Y | tGc | tAc | 3 | 3 | B.1.177.86 | 0.00055 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.239 | 0.003663 |
ORF3a | 148 | C148G | Tgc | Ggc | 3 | 3 | B.1.243 | 0.000209 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.526 | 0.000071 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.549 | 0.021583 |
ORF3a | 148 | C148C | tgC | tgT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF3a | 148 | C148del | TGC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 148 | C148S | Tgc | Agc | 2 | 2 | 0.111111 | |
ORF3a | 148 | C148del | TGC | --- | 2 | 2 | 0.111111 | |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | A | 0.000774 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 148 | C148F | tGc | tTc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 148 | C148R | Tgc | Cgc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 148 | C148Y | tGc | tAc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 148 | C148S | Tgc | Agc | 2 | 2 | AY.109 | 0.001479 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 148 | C148F | tGc | tTc | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 148 | C148Y | tGc | tAc | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 148 | C148del | TGC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF3a | 148 | C148F | tGc | tTc | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 148 | C148Y | tGc | tAc | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 148 | C148del | TGC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 2 | AY.4.2 | 0.000022 |
ORF3a | 148 | C148S | tGc | tCc | 1 | 2 | AY.4.2 | 0.000022 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 148 | C148del1 | tGc | t-c | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.67 | 0.000929 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.86 | 0.00166 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 148 | C148X | tgC | tgA | 2 | 2 | B.1 | 0.000018 |
ORF3a | 148 | C148W | tgC | tgG | 2 | 2 | B.1 | 0.000018 |
ORF3a | 148 | C148S | tGc | tCc | 1 | 2 | B.1 | 0.000009 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 2 | B.1 | 0.000009 |
ORF3a | 148 | C148S | tGc | tCc | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 148 | C148del1 | Tgc | -gc | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 148 | C148del | TGC | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.161 | 0.034483 |
ORF3a | 148 | C148del | TGC | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.36.35 | 0.005208 |
ORF3a | 148 | C148Y | tGc | tAc | 2 | 2 | B.1.396 | 0.001411 |
ORF3a | 148 | C148Y | tGc | tAc | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 148 | C148del | TGC | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 148 | C148del | TGC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 148 | C148del1 | Tgc | -gc | 2 | 2 | B.1.88.1 | 0.009615 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | B.40 | 0.000729 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | C.36 | 0.001821 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | C.36.3.1 | 0.005435 |
ORF3a | 148 | C148F | tGc | tTc | 2 | 2 | N.5 | 0.003534 |
ORF3a | 148 | C148del | TGC | --- | 2 | 2 | P.1 | 0.000032 |
ORF3a | 148 | C148F | tGc | tTc | 2 | 2 | P.1 | 0.000032 |
ORF3a | 148 | C148del | TGC | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 148 | C148Y | tGc | tAc | 2 | 2 | P.1.17.1 | 0.00175 |
ORF3a | 148 | C148C | tgC | tgT | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | 0.055556 | |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | A | 0.000387 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 148 | C148N | TGc | AAc | 1 | 1 | All | 0 |
ORF3a | 148 | C148L | tGC | tTG | 1 | 1 | All | 0 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.10 | 0.00053 |
ORF3a | 148 | C148del1 | Tgc | -gc | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 148 | C148R | Tgc | Cgc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 148 | C148W | tgC | tgG | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 148 | C148S | tGc | tCc | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 148 | C148del1 | Tgc | -gc | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 148 | C148del1 | tgC | tg- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 148 | C148del2 | TGc | --c | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 148 | C148del1 | Tgc | -gc | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 148 | C148del1 | Tgc | -gc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 148 | C148S | tGc | tCc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 148 | C148del1 | Tgc | -gc | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 148 | C148W | tgC | tgG | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 148 | C148del1 | Tgc | -gc | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 148 | C148G | Tgc | Ggc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 148 | C148X | tgC | tgA | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 148 | C148W | tgC | tgG | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.87 | 0.000833 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B | 0.000128 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B | 0.000128 |
ORF3a | 148 | C148G | Tgc | Ggc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 148 | C148L | tGC | tTG | 1 | 1 | B.1 | 0.000009 |
ORF3a | 148 | C148G | Tgc | Ggc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 148 | C148X | tgC | tgA | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 148 | C148X | tgC | tgA | 1 | 1 | B.1.1.164 | 0.005155 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF3a | 148 | C148W | tgC | tgG | 1 | 1 | B.1.1.184 | 0.058824 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 148 | C148del1 | Tgc | -gc | 1 | 1 | B.1.1.298 | 0.000862 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.1.355 | 0.015385 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.1.483 | 0.038462 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.1.55 | 0.012987 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 148 | C148N | TGc | AAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 148 | C148del2 | TGc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.1.95 | 0.019608 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 148 | C148S | tGc | tCc | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 148 | C148del1 | Tgc | -gc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 148 | C148R | Tgc | Cgc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 148 | C148X | tgC | tgA | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 148 | C148del1 | Tgc | -gc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.225 | 0.015385 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.343 | 0.020833 |
ORF3a | 148 | C148G | Tgc | Ggc | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.416 | 0.001269 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | B.1.426 | 0.001009 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 148 | C148Y | tGc | tAc | 1 | 1 | B.1.453 | 0.003236 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 148 | C148R | Tgc | Cgc | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.547 | 0.02439 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 148 | C148R | Tgc | Cgc | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.1.590 | 0.004545 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 148 | C148X | tgC | tgA | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 148 | C148X | tgC | tgA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 148 | C148del2 | TGc | --c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 148 | C148S | Tgc | Agc | 1 | 1 | B.31 | 0.003731 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.33 | 0.021277 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | B.6 | 0.00091 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | B.61 | 0.005747 |
ORF3a | 148 | C148F | tGc | tTc | 1 | 1 | C.16 | 0.00106 |
ORF3a | 148 | C148S | tGc | tCc | 1 | 1 | C.18 | 0.002591 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | C.23 | 0.005814 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | C.37 | 0.000116 |
ORF3a | 148 | C148S | tGc | tCc | 1 | 1 | D.2 | 0.000075 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | P.3 | 0.001595 |
ORF3a | 148 | C148C | tgC | tgT | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 148 | C148del | TGC | --- | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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