CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 148

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a148C148CsyntgCtgT24762476125834-25836
ORF3a148C148FnonsyntGctTc178178125834-25836
ORF3a148C148deldelTGC---7878125834-25836
ORF3a148C148SnonsynTgcAgc71450.63380325834-25836
ORF3a148C148SnonsyntGctCc71260.36619725834-25836
ORF3a148C148YnonsyntGctAc5050125834-25836
ORF3a148C148del1delTgc-gc32280.87525834-25836
ORF3a148C148del1deltGct-c3220.062525834-25836
ORF3a148C148del1deltgCtg-3220.062525834-25836
ORF3a148C148RnonsynTgcCgc1313125834-25836
ORF3a148C148XnonsyntgCtgA88125834-25836
ORF3a148C148GnonsynTgcGgc77125834-25836
ORF3a148C148WnonsyntgCtgG66125834-25836
ORF3a148C148del2delTGc--c33125834-25836
ORF3a148C148LnonsyntGCtTG11125834-25836
ORF3a148C148NnonsynTGcAAc11125834-25836

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a148C148CtgCtgT24762476All0.000474
ORF3a148C148CtgCtgT564564AY.470.017543
ORF3a148C148CtgCtgT381381B.1.1.70.000341
ORF3a148C148CtgCtgT227227AY.430.001006
ORF3a148C148FtGctTc178178All0.000034
ORF3a148C148CtgCtgT163163AY.440.000992
ORF3a148C148CtgCtgT115115B.1.617.20.000433
ORF3a148C148CtgCtgT110110AY.40.000171
ORF3a148C148delTGC---7878All0.000015
ORF3a148C148STgcAgc4571All0.000009
ORF3a148C148StGctCc2671All0.000005
ORF3a148C148CtgCtgT6666AY.250.000397
ORF3a148C148CtgCtgT6060B.1.177.590.967742
ORF3a148C148CtgCtgT5151P.1.100.013743
ORF3a148C148YtGctAc5050All0.00001
ORF3a148C148CtgCtgT4949AY.1030.000304
ORF3a148C148CtgCtgT4646AY.98.10.002228
ORF3a148C148FtGctTc4343B.1.3510.001278
ORF3a148C148CtgCtgT4141B.10.000376
ORF3a148C148CtgCtgT3535AY.390.000865
ORF3a148C148FtGctTc3535B.1.1.70.000031
ORF3a148C148CtgCtgT3333B.1.20.000291
ORF3a148C148del1Tgc-gc2832All0.000005
ORF3a148C148del1tGct-c232All0
ORF3a148C148del1tgCtg-232All0
ORF3a148C148FtGctTc3131AY.40.000048
ORF3a148C148CtgCtgT3131B.1.4270.001565
ORF3a148C148CtgCtgT2121AY.530.006038
ORF3a148C148delTGC---1919B.1.1.70.000017
ORF3a148C148CtgCtgT1818B.1.3510.000535
ORF3a148C148CtgCtgT1717B.1.10.000308
ORF3a148C148CtgCtgT1717B.1.1770.000224
ORF3a148C148CtgCtgT1515B.1.351.20.004539
ORF3a148C148YtGctAc1414B.1.1.70.000013
ORF3a148C148RTgcCgc1313All0.000002
ORF3a148C148CtgCtgT1313AY.200.000505
ORF3a148C148CtgCtgT1313B.1.5250.001471
ORF3a148C148StGctCc1313B.1.619.10.008339
ORF3a148C148CtgCtgT1212AY.1190.000424
ORF3a148C148STgcAgc1112B.1.1.70.00001
ORF3a148C148StGctCc112B.1.1.70.000001
ORF3a148C148CtgCtgT1212P.10.000189
ORF3a148C148CtgCtgT1111AY.20.003917
ORF3a148C148CtgCtgT1111B.1.6210.000974
ORF3a148C148del1Tgc-gc910B.1.1.70.000008
ORF3a148C148del1tgCtg-110B.1.1.70.000001
ORF3a148C148CtgCtgT1010B.1.36.180.004202
ORF3a148C148CtgCtgT99AY.1020.000239
ORF3a148C148CtgCtgT99B.1.4290.000212
ORF3a148C148XtgCtgA88All0.000002
ORF3a148C148CtgCtgT88AY.160.003037
ORF3a148C148CtgCtgT88AY.39.10.000317
ORF3a148C148STgcAgc88AY.40.000012
ORF3a148C148FtGctTc88B.1.617.20.00003
ORF3a148C148GTgcGgc77All0.000001
ORF3a148C148CtgCtgT77AY.1200.00026
ORF3a148C148CtgCtgT77AY.30.00007
ORF3a148C148FtGctTc77AY.390.000173
ORF3a148C148delTGC---77B.10.000064
ORF3a148C148CtgCtgT77B.1.1.4460.538462
ORF3a148C148CtgCtgT77D.20.000525
ORF3a148C148CtgCtgT66A.2.5.20.009434
ORF3a148C148WtgCtgG66All0.000001
ORF3a148C148FtGctTc66AY.1180.000376
ORF3a148C148CtgCtgT66AY.260.00017
ORF3a148C148del1Tgc-gc66AY.40.000009
ORF3a148C148CtgCtgT66AY.750.000336
ORF3a148C148CtgCtgT66AY.930.001638
ORF3a148C148CtgCtgT66B.1.1.2160.005343
ORF3a148C148CtgCtgT66B.1.1.3060.00263
ORF3a148C148CtgCtgT55AY.1000.00023
ORF3a148C148FtGctTc55AY.430.000022
ORF3a148C148delTGC---55AY.430.000022
ORF3a148C148CtgCtgT55AY.60.000206
ORF3a148C148FtGctTc55B.10.000046
ORF3a148C148CtgCtgT55B.1.1.10.001633
ORF3a148C148CtgCtgT55B.1.1.5190.000199
ORF3a148C148CtgCtgT55B.1.177.320.006748
ORF3a148C148CtgCtgT55B.1.2320.002687
ORF3a148C148CtgCtgT55B.1.2410.004058
ORF3a148C148YtGctAc55P.10.000079
ORF3a148C148STgcAgc44AY.1030.000025
ORF3a148C148CtgCtgT44AY.4.2.10.000596
ORF3a148C148RTgcCgc44AY.440.000024
ORF3a148C148CtgCtgT44AY.50.000083
ORF3a148C148CtgCtgT44AY.99.20.000369
ORF3a148C148delTGC---44B.1.1770.000053
ORF3a148C148CtgCtgT44B.1.177.210.000306
ORF3a148C148CtgCtgT44B.1.258.170.000416
ORF3a148C148CtgCtgT44B.1.360.000584
ORF3a148C148CtgCtgT44C.160.004242
ORF3a148C148YtGctAc33A.10.000846
ORF3a148C148del2TGc--c33All0.000001
ORF3a148C148CtgCtgT33AY.1090.002219
ORF3a148C148FtGctTc33AY.250.000018
ORF3a148C148CtgCtgT33AY.270.000194
ORF3a148C148CtgCtgT33AY.290.000047
ORF3a148C148CtgCtgT33AY.340.000291
ORF3a148C148FtGctTc33AY.4.20.000065
ORF3a148C148CtgCtgT33AY.4.20.000065
ORF3a148C148StGctCc33AY.590.001589
ORF3a148C148CtgCtgT33AY.610.000314
ORF3a148C148CtgCtgT33B.1.1.2140.000166
ORF3a148C148CtgCtgT33B.1.1.4010.2
ORF3a148C148RTgcCgc33B.1.1.70.000003
ORF3a148C148CtgCtgT33B.1.1600.000094
ORF3a148C148CtgCtgT33B.1.160.300.008929
ORF3a148C148YtGctAc33B.1.177.860.00055
ORF3a148C148CtgCtgT33B.1.2390.003663
ORF3a148C148GTgcGgc33B.1.2430.000209
ORF3a148C148CtgCtgT33B.1.3110.000824
ORF3a148C148CtgCtgT33B.1.466.20.001174
ORF3a148C148CtgCtgT33B.1.5260.000071
ORF3a148C148CtgCtgT33B.1.5490.021583
ORF3a148C148CtgCtgT33B.1.617.10.000387
ORF3a148C148delTGC---33B.1.617.20.000011
ORF3a148C148STgcAgc220.111111
ORF3a148C148delTGC---220.111111
ORF3a148C148CtgCtgT22A0.000774
ORF3a148C148CtgCtgT22AD.20.000438
ORF3a148C148FtGctTc22AY.1030.000012
ORF3a148C148RTgcCgc22AY.1030.000012
ORF3a148C148YtGctAc22AY.1030.000012
ORF3a148C148STgcAgc22AY.1090.001479
ORF3a148C148CtgCtgT22AY.1180.000125
ORF3a148C148FtGctTc22AY.1200.000074
ORF3a148C148CtgCtgT22AY.230.000139
ORF3a148C148YtGctAc22AY.250.000012
ORF3a148C148delTGC---22AY.250.000012
ORF3a148C148FtGctTc22AY.30.00002
ORF3a148C148CtgCtgT22AY.330.000134
ORF3a148C148YtGctAc22AY.40.000003
ORF3a148C148delTGC---22AY.40.000003
ORF3a148C148STgcAgc12AY.4.20.000022
ORF3a148C148StGctCc12AY.4.20.000022
ORF3a148C148CtgCtgT22AY.4.50.000215
ORF3a148C148del1tGct-c22AY.430.000009
ORF3a148C148CtgCtgT22AY.460.000208
ORF3a148C148CtgCtgT22AY.5.30.000675
ORF3a148C148CtgCtgT22AY.540.000191
ORF3a148C148CtgCtgT22AY.590.001059
ORF3a148C148CtgCtgT22AY.670.000929
ORF3a148C148CtgCtgT22AY.75.10.000361
ORF3a148C148CtgCtgT22AY.860.00166
ORF3a148C148CtgCtgT22AY.880.001768
ORF3a148C148CtgCtgT22AY.9.20.000073
ORF3a148C148XtgCtgA22B.10.000018
ORF3a148C148WtgCtgG22B.10.000018
ORF3a148C148StGctCc12B.10.000009
ORF3a148C148STgcAgc12B.10.000009
ORF3a148C148StGctCc22B.1.10.000036
ORF3a148C148del1Tgc-gc22B.1.10.000036
ORF3a148C148CtgCtgT22B.1.1.2220.000408
ORF3a148C148delTGC---22B.1.1.3150.016949
ORF3a148C148CtgCtgT22B.1.1.390.001019
ORF3a148C148CtgCtgT22B.1.1610.034483
ORF3a148C148delTGC---22B.1.177.40.000422
ORF3a148C148CtgCtgT22B.1.258.140.001961
ORF3a148C148CtgCtgT22B.1.36.290.001035
ORF3a148C148CtgCtgT22B.1.36.350.005208
ORF3a148C148YtGctAc22B.1.3960.001411
ORF3a148C148YtGctAc22B.1.4290.000047
ORF3a148C148delTGC---22B.1.5250.000226
ORF3a148C148CtgCtgT22B.1.5960.000174
ORF3a148C148delTGC---22B.1.6210.000177
ORF3a148C148del1Tgc-gc22B.1.88.10.009615
ORF3a148C148CtgCtgT22B.400.000729
ORF3a148C148CtgCtgT22C.360.001821
ORF3a148C148CtgCtgT22C.36.3.10.005435
ORF3a148C148FtGctTc22N.50.003534
ORF3a148C148delTGC---22P.10.000032
ORF3a148C148FtGctTc22P.10.000032
ORF3a148C148delTGC---22P.1.150.000465
ORF3a148C148YtGctAc22P.1.17.10.00175
ORF3a148C148CtgCtgT22Q.10.000253
ORF3a148C148FtGctTc110.055556
ORF3a148C148delTGC---11A0.000387
ORF3a148C148CtgCtgT11A.2.50.000499
ORF3a148C148CtgCtgT11A.23.10.000704
ORF3a148C148delTGC---11AD.20.000219
ORF3a148C148NTGcAAc11All0
ORF3a148C148LtGCtTG11All0
ORF3a148C148CtgCtgT11AY.100.00053
ORF3a148C148del1Tgc-gc11AY.1030.000006
ORF3a148C148CtgCtgT11AY.1060.000335
ORF3a148C148CtgCtgT11AY.1080.001103
ORF3a148C148CtgCtgT11AY.110.001339
ORF3a148C148CtgCtgT11AY.1100.000113
ORF3a148C148CtgCtgT11AY.1130.000142
ORF3a148C148CtgCtgT11AY.1160.000287
ORF3a148C148RTgcCgc11AY.1170.000085
ORF3a148C148CtgCtgT11AY.1170.000085
ORF3a148C148FtGctTc11AY.1170.000085
ORF3a148C148STgcAgc11AY.1180.000063
ORF3a148C148WtgCtgG11AY.120.000316
ORF3a148C148FtGctTc11AY.120.000316
ORF3a148C148CtgCtgT11AY.120.000316
ORF3a148C148StGctCc11AY.1200.000037
ORF3a148C148CtgCtgT11AY.120.2.10.000498
ORF3a148C148CtgCtgT11AY.1210.000135
ORF3a148C148CtgCtgT11AY.140.000088
ORF3a148C148CtgCtgT11AY.190.00114
ORF3a148C148del1Tgc-gc11AY.20.000356
ORF3a148C148del1tgCtg-11AY.200.000039
ORF3a148C148CtgCtgT11AY.240.000431
ORF3a148C148STgcAgc11AY.250.000006
ORF3a148C148del2TGc--c11AY.250.000006
ORF3a148C148del1Tgc-gc11AY.250.000006
ORF3a148C148del1Tgc-gc11AY.260.000028
ORF3a148C148StGctCc11AY.260.000028
ORF3a148C148FtGctTc11AY.290.000016
ORF3a148C148delTGC---11AY.290.000016
ORF3a148C148STgcAgc11AY.30.00001
ORF3a148C148del1Tgc-gc11AY.30.00001
ORF3a148C148YtGctAc11AY.330.000067
ORF3a148C148CtgCtgT11AY.34.10.00051
ORF3a148C148CtgCtgT11AY.360.000148
ORF3a148C148CtgCtgT11AY.370.000316
ORF3a148C148delTGC---11AY.390.000025
ORF3a148C148YtGctAc11AY.390.000025
ORF3a148C148WtgCtgG11AY.40.000002
ORF3a148C148del1Tgc-gc11AY.4.20.000022
ORF3a148C148delTGC---11AY.4.50.000107
ORF3a148C148CtgCtgT11AY.420.00004
ORF3a148C148YtGctAc11AY.430.000004
ORF3a148C148GTgcGgc11AY.430.000004
ORF3a148C148FtGctTc11AY.440.000006
ORF3a148C148CtgCtgT11AY.46.60.000072
ORF3a148C148FtGctTc11AY.470.000031
ORF3a148C148FtGctTc11AY.50.000021
ORF3a148C148CtgCtgT11AY.5.40.000277
ORF3a148C148CtgCtgT11AY.580.000907
ORF3a148C148XtgCtgA11AY.590.00053
ORF3a148C148WtgCtgG11AY.590.00053
ORF3a148C148STgcAgc11AY.610.000105
ORF3a148C148CtgCtgT11AY.620.000436
ORF3a148C148CtgCtgT11AY.650.000533
ORF3a148C148delTGC---11AY.680.000274
ORF3a148C148CtgCtgT11AY.690.000187
ORF3a148C148YtGctAc11AY.7.10.000113
ORF3a148C148CtgCtgT11AY.710.000475
ORF3a148C148STgcAgc11AY.740.000116
ORF3a148C148CtgCtgT11AY.780.001541
ORF3a148C148CtgCtgT11AY.790.001211
ORF3a148C148CtgCtgT11AY.850.000427
ORF3a148C148CtgCtgT11AY.870.000833
ORF3a148C148CtgCtgT11AY.90.000068
ORF3a148C148CtgCtgT11AY.9.10.000084
ORF3a148C148FtGctTc11AY.920.000287
ORF3a148C148YtGctAc11AY.99.20.000092
ORF3a148C148CtgCtgT11B0.000128
ORF3a148C148delTGC---11B0.000128
ORF3a148C148GTgcGgc11B.10.000009
ORF3a148C148LtGCtTG11B.10.000009
ORF3a148C148GTgcGgc11B.1.10.000018
ORF3a148C148YtGctAc11B.1.10.000018
ORF3a148C148XtgCtgA11B.1.10.000018
ORF3a148C148XtgCtgA11B.1.1.1640.005155
ORF3a148C148delTGC---11B.1.1.1700.001247
ORF3a148C148WtgCtgG11B.1.1.1840.058824
ORF3a148C148CtgCtgT11B.1.1.1890.001513
ORF3a148C148YtGctAc11B.1.1.250.000569
ORF3a148C148CtgCtgT11B.1.1.250.000569
ORF3a148C148STgcAgc11B.1.1.2910.000742
ORF3a148C148del1Tgc-gc11B.1.1.2980.000862
ORF3a148C148CtgCtgT11B.1.1.3110.000358
ORF3a148C148CtgCtgT11B.1.1.3120.001912
ORF3a148C148CtgCtgT11B.1.1.3150.008475
ORF3a148C148FtGctTc11B.1.1.3550.015385
ORF3a148C148CtgCtgT11B.1.1.3690.000446
ORF3a148C148FtGctTc11B.1.1.370.000193
ORF3a148C148FtGctTc11B.1.1.390.00051
ORF3a148C148delTGC---11B.1.1.4090.002833
ORF3a148C148CtgCtgT11B.1.1.4480.002033
ORF3a148C148CtgCtgT11B.1.1.4830.038462
ORF3a148C148YtGctAc11B.1.1.5190.00004
ORF3a148C148FtGctTc11B.1.1.550.012987
ORF3a148C148YtGctAc11B.1.1.630.000386
ORF3a148C148NTGcAAc11B.1.1.70.000001
ORF3a148C148del2TGc--c11B.1.1.70.000001
ORF3a148C148FtGctTc11B.1.1.700.000341
ORF3a148C148STgcAgc11B.1.1.950.019608
ORF3a148C148delTGC---11B.1.1400.018868
ORF3a148C148FtGctTc11B.1.1600.000031
ORF3a148C148StGctCc11B.1.1600.000031
ORF3a148C148delTGC---11B.1.1600.000031
ORF3a148C148delTGC---11B.1.160.230.004831
ORF3a148C148YtGctAc11B.1.1770.000013
ORF3a148C148del1Tgc-gc11B.1.1770.000013
ORF3a148C148RTgcCgc11B.1.1770.000013
ORF3a148C148delTGC---11B.1.177.110.001698
ORF3a148C148XtgCtgA11B.1.177.40.000211
ORF3a148C148CtgCtgT11B.1.177.500.004695
ORF3a148C148delTGC---11B.1.177.510.004566
ORF3a148C148STgcAgc11B.1.177.600.000218
ORF3a148C148delTGC---11B.1.177.620.001192
ORF3a148C148CtgCtgT11B.1.177.720.00339
ORF3a148C148CtgCtgT11B.1.177.730.000566
ORF3a148C148FtGctTc11B.1.177.730.000566
ORF3a148C148STgcAgc11B.1.177.860.000183
ORF3a148C148del1Tgc-gc11B.1.20.000009
ORF3a148C148FtGctTc11B.1.20.000009
ORF3a148C148STgcAgc11B.1.20.000009
ORF3a148C148YtGctAc11B.1.20.000009
ORF3a148C148CtgCtgT11B.1.2100.002132
ORF3a148C148CtgCtgT11B.1.214.20.0006
ORF3a148C148CtgCtgT11B.1.2210.000071
ORF3a148C148STgcAgc11B.1.2210.000071
ORF3a148C148FtGctTc11B.1.2210.000071
ORF3a148C148delTGC---11B.1.2210.000071
ORF3a148C148CtgCtgT11B.1.2250.015385
ORF3a148C148FtGctTc11B.1.2340.000132
ORF3a148C148STgcAgc11B.1.2360.002053
ORF3a148C148FtGctTc11B.1.2430.00007
ORF3a148C148CtgCtgT11B.1.2580.000067
ORF3a148C148CtgCtgT11B.1.2600.003344
ORF3a148C148CtgCtgT11B.1.3430.020833
ORF3a148C148GTgcGgc11B.1.3510.00003
ORF3a148C148CtgCtgT11B.1.36.220.001208
ORF3a148C148CtgCtgT11B.1.3910.001127
ORF3a148C148CtgCtgT11B.1.4160.001269
ORF3a148C148delTGC---11B.1.416.10.001563
ORF3a148C148YtGctAc11B.1.4260.001009
ORF3a148C148STgcAgc11B.1.4290.000024
ORF3a148C148CtgCtgT11B.1.438.10.000107
ORF3a148C148YtGctAc11B.1.4530.003236
ORF3a148C148CtgCtgT11B.1.5030.002488
ORF3a148C148RTgcCgc11B.1.5250.000113
ORF3a148C148STgcAgc11B.1.5260.000024
ORF3a148C148CtgCtgT11B.1.5470.02439
ORF3a148C148CtgCtgT11B.1.5610.000397
ORF3a148C148FtGctTc11B.1.5640.000426
ORF3a148C148RTgcCgc11B.1.5640.000426
ORF3a148C148CtgCtgT11B.1.5750.000303
ORF3a148C148STgcAgc11B.1.5900.004545
ORF3a148C148CtgCtgT11B.1.5950.000261
ORF3a148C148delTGC---11B.1.5960.000087
ORF3a148C148XtgCtgA11B.1.5960.000087
ORF3a148C148CtgCtgT11B.1.6090.000479
ORF3a148C148delTGC---11B.1.6090.000479
ORF3a148C148XtgCtgA11B.1.617.10.000129
ORF3a148C148delTGC---11B.1.617.10.000129
ORF3a148C148del2TGc--c11B.1.617.20.000004
ORF3a148C148CtgCtgT11B.1.6230.000536
ORF3a148C148CtgCtgT11B.1.6280.000352
ORF3a148C148CtgCtgT11B.1.6370.000073
ORF3a148C148delTGC---11B.1.6380.052632
ORF3a148C148STgcAgc11B.310.003731
ORF3a148C148CtgCtgT11B.330.021277
ORF3a148C148FtGctTc11B.60.00091
ORF3a148C148CtgCtgT11B.610.005747
ORF3a148C148FtGctTc11C.160.00106
ORF3a148C148StGctCc11C.180.002591
ORF3a148C148CtgCtgT11C.230.005814
ORF3a148C148CtgCtgT11C.36.30.000567
ORF3a148C148CtgCtgT11C.370.000116
ORF3a148C148StGctCc11D.20.000075
ORF3a148C148CtgCtgT11P.1.140.000048
ORF3a148C148CtgCtgT11P.30.001595
ORF3a148C148CtgCtgT11Q.40.000455
ORF3a148C148delTGC---11Q.40.000455