CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 143 | A143A | syn | gcC | gcT | 1570 | 1476 | 0.940127 | 25819-25821 | |
ORF3a | 143 | A143A | syn | gcC | gcA | 1570 | 78 | 0.0496815 | 25819-25821 | |
ORF3a | 143 | A143A | syn | gcC | gcG | 1570 | 16 | 0.0101911 | 25819-25821 | |
ORF3a | 143 | A143S | nonsyn | Gcc | Tcc | 1114 | 1112 | 0.998205 | 25819-25821 | |
ORF3a | 143 | A143S | nonsyn | GcC | TcA | 1114 | 2 | 0.00179533 | 25819-25821 | |
ORF3a | 143 | A143T | nonsyn | Gcc | Acc | 734 | 734 | 1 | 25819-25821 | |
ORF3a | 143 | A143V | nonsyn | gCc | gTc | 666 | 664 | 0.996997 | 25819-25821 | |
ORF3a | 143 | A143V | nonsyn | gCC | gTA | 666 | 1 | 0.0015015 | 25819-25821 | |
ORF3a | 143 | A143V | nonsyn | gCC | gTT | 666 | 1 | 0.0015015 | 25819-25821 | |
ORF3a | 143 | A143del | del | GCC | --- | 102 | 102 | 1 | 25819-25821 | |
ORF3a | 143 | A143D | nonsyn | gCc | gAc | 61 | 61 | 1 | 25819-25821 | |
ORF3a | 143 | A143E | nonsyn | gCC | gAA | 22 | 22 | 1 | 25819-25821 | |
ORF3a | 143 | A143P | nonsyn | Gcc | Ccc | 13 | 13 | 1 | 25819-25821 | |
ORF3a | 143 | A143G | nonsyn | gCc | gGc | 5 | 5 | 1 | 25819-25821 | |
ORF3a | 143 | A143del1 | del | Gcc | -cc | 3 | 3 | 1 | 25819-25821 | |
ORF3a | 143 | A143N | nonsyn | GCc | AAc | 2 | 2 | 1 | 25819-25821 | |
ORF3a | 143 | A143C | nonsyn | GCc | TGc | 1 | 1 | 1 | 25819-25821 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 143 | A143A | gcC | gcT | 1476 | 1570 | All | 0.000282 |
ORF3a | 143 | A143A | gcC | gcA | 78 | 1570 | All | 0.000015 |
ORF3a | 143 | A143A | gcC | gcG | 16 | 1570 | All | 0.000003 |
ORF3a | 143 | A143S | Gcc | Tcc | 1112 | 1114 | All | 0.000213 |
ORF3a | 143 | A143S | GcC | TcA | 2 | 1114 | All | 0 |
ORF3a | 143 | A143A | gcC | gcT | 756 | 757 | AY.44 | 0.004602 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 757 | AY.44 | 0.000006 |
ORF3a | 143 | A143T | Gcc | Acc | 734 | 734 | All | 0.00014 |
ORF3a | 143 | A143V | gCc | gTc | 664 | 666 | All | 0.000127 |
ORF3a | 143 | A143V | gCC | gTT | 1 | 666 | All | 0 |
ORF3a | 143 | A143V | gCC | gTA | 1 | 666 | All | 0 |
ORF3a | 143 | A143S | Gcc | Tcc | 423 | 423 | B.1.1.207 | 0.5 |
ORF3a | 143 | A143T | Gcc | Acc | 300 | 300 | B.1.1.258 | 0.977199 |
ORF3a | 143 | A143S | Gcc | Tcc | 186 | 186 | B.1.258 | 0.012378 |
ORF3a | 143 | A143S | Gcc | Tcc | 166 | 166 | AY.25 | 0.000998 |
ORF3a | 143 | A143A | gcC | gcT | 129 | 139 | B.1.1.7 | 0.000115 |
ORF3a | 143 | A143A | gcC | gcA | 10 | 139 | B.1.1.7 | 0.000009 |
ORF3a | 143 | A143A | gcC | gcT | 129 | 137 | AY.4 | 0.000201 |
ORF3a | 143 | A143A | gcC | gcA | 6 | 137 | AY.4 | 0.000009 |
ORF3a | 143 | A143A | gcC | gcG | 2 | 137 | AY.4 | 0.000003 |
ORF3a | 143 | A143A | gcC | gcT | 111 | 113 | B.1 | 0.001017 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 113 | B.1 | 0.000009 |
ORF3a | 143 | A143A | gcC | gcG | 1 | 113 | B.1 | 0.000009 |
ORF3a | 143 | A143V | gCc | gTc | 104 | 105 | B.1.1.7 | 0.000093 |
ORF3a | 143 | A143V | gCC | gTT | 1 | 105 | B.1.1.7 | 0.000001 |
ORF3a | 143 | A143T | Gcc | Acc | 103 | 103 | B.1.617.2 | 0.000388 |
ORF3a | 143 | A143del | GCC | --- | 102 | 102 | All | 0.00002 |
ORF3a | 143 | A143A | gcC | gcT | 100 | 100 | AY.25 | 0.000601 |
ORF3a | 143 | A143S | Gcc | Tcc | 95 | 95 | B.1.1.362 | 0.533708 |
ORF3a | 143 | A143T | Gcc | Acc | 87 | 87 | B.1.1.7 | 0.000078 |
ORF3a | 143 | A143V | gCc | gTc | 86 | 86 | B.1.429 | 0.002023 |
ORF3a | 143 | A143V | gCc | gTc | 82 | 82 | AY.25 | 0.000493 |
ORF3a | 143 | A143V | gCc | gTc | 64 | 64 | B.1.351 | 0.001902 |
ORF3a | 143 | A143D | gCc | gAc | 61 | 61 | All | 0.000012 |
ORF3a | 143 | A143T | Gcc | Acc | 55 | 55 | B.1 | 0.000504 |
ORF3a | 143 | A143V | gCc | gTc | 54 | 54 | AY.39 | 0.001334 |
ORF3a | 143 | A143T | Gcc | Acc | 46 | 46 | AY.6 | 0.001892 |
ORF3a | 143 | A143A | gcC | gcT | 38 | 46 | B.1.617.2 | 0.000143 |
ORF3a | 143 | A143A | gcC | gcA | 8 | 46 | B.1.617.2 | 0.00003 |
ORF3a | 143 | A143S | Gcc | Tcc | 42 | 43 | B.1.1.7 | 0.000038 |
ORF3a | 143 | A143S | GcC | TcA | 1 | 43 | B.1.1.7 | 0.000001 |
ORF3a | 143 | A143S | Gcc | Tcc | 42 | 42 | B.1.617.2 | 0.000158 |
ORF3a | 143 | A143V | gCc | gTc | 40 | 40 | AY.4 | 0.000062 |
ORF3a | 143 | A143V | gCc | gTc | 30 | 30 | AE.5 | 0.555556 |
ORF3a | 143 | A143V | gCc | gTc | 30 | 30 | AY.103 | 0.000186 |
ORF3a | 143 | A143A | gcC | gcT | 27 | 28 | P.1 | 0.000425 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 28 | P.1 | 0.000016 |
ORF3a | 143 | A143T | Gcc | Acc | 27 | 27 | AU.2 | 0.065375 |
ORF3a | 143 | A143V | gCc | gTc | 26 | 26 | B.1.617.2 | 0.000098 |
ORF3a | 143 | A143S | Gcc | Tcc | 24 | 24 | AY.43 | 0.000106 |
ORF3a | 143 | A143del | GCC | --- | 23 | 23 | B.1.1.7 | 0.000021 |
ORF3a | 143 | A143E | gCC | gAA | 22 | 22 | All | 0.000004 |
ORF3a | 143 | A143A | gcC | gcT | 19 | 19 | B.1.324 | 0.030498 |
ORF3a | 143 | A143A | gcC | gcA | 17 | 18 | AY.5 | 0.000351 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 18 | AY.5 | 0.000021 |
ORF3a | 143 | A143S | Gcc | Tcc | 17 | 17 | AY.100 | 0.000782 |
ORF3a | 143 | A143V | gCc | gTc | 14 | 14 | B.1.2 | 0.000123 |
ORF3a | 143 | A143P | Gcc | Ccc | 13 | 13 | All | 0.000002 |
ORF3a | 143 | A143T | Gcc | Acc | 13 | 13 | AY.103 | 0.000081 |
ORF3a | 143 | A143T | Gcc | Acc | 12 | 12 | AY.4 | 0.000019 |
ORF3a | 143 | A143S | Gcc | Tcc | 12 | 12 | AY.4 | 0.000019 |
ORF3a | 143 | A143V | gCc | gTc | 12 | 12 | B.1.1 | 0.000218 |
ORF3a | 143 | A143A | gcC | gcT | 11 | 11 | A.2.5.2 | 0.017296 |
ORF3a | 143 | A143A | gcC | gcA | 10 | 11 | AY.3 | 0.000099 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 11 | AY.3 | 0.00001 |
ORF3a | 143 | A143S | Gcc | Tcc | 11 | 11 | B.1.1.189 | 0.016641 |
ORF3a | 143 | A143A | gcC | gcT | 11 | 11 | B.1.36.38 | 0.018062 |
ORF3a | 143 | A143A | gcC | gcT | 10 | 10 | AY.26 | 0.000283 |
ORF3a | 143 | A143E | gCC | gAA | 10 | 10 | B.1.1.7 | 0.000009 |
ORF3a | 143 | A143A | gcC | gcT | 10 | 10 | B.1.2 | 0.000088 |
ORF3a | 143 | A143A | gcC | gcT | 8 | 9 | AY.43 | 0.000035 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 9 | AY.43 | 0.000004 |
ORF3a | 143 | A143S | Gcc | Tcc | 9 | 9 | B.1 | 0.000082 |
ORF3a | 143 | A143D | gCc | gAc | 9 | 9 | B.1.1.7 | 0.000008 |
ORF3a | 143 | A143A | gcC | gcA | 4 | 8 | B.1.1 | 0.000073 |
ORF3a | 143 | A143A | gcC | gcT | 4 | 8 | B.1.1 | 0.000073 |
ORF3a | 143 | A143A | gcC | gcG | 8 | 8 | B.1.1.50 | 0.005431 |
ORF3a | 143 | A143T | Gcc | Acc | 8 | 8 | B.1.311 | 0.002197 |
ORF3a | 143 | A143V | gCc | gTc | 7 | 7 | AY.3 | 0.00007 |
ORF3a | 143 | A143P | Gcc | Ccc | 7 | 7 | AY.30 | 0.00277 |
ORF3a | 143 | A143del | GCC | --- | 7 | 7 | AY.43 | 0.000031 |
ORF3a | 143 | A143T | Gcc | Acc | 7 | 7 | AY.43 | 0.000031 |
ORF3a | 143 | A143S | Gcc | Tcc | 7 | 7 | AY.44 | 0.000043 |
ORF3a | 143 | A143del | GCC | --- | 7 | 7 | B.1 | 0.000064 |
ORF3a | 143 | A143T | Gcc | Acc | 7 | 7 | B.1.1.519 | 0.000278 |
ORF3a | 143 | A143A | gcC | gcT | 6 | 7 | B.1.351 | 0.000178 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 7 | B.1.351 | 0.00003 |
ORF3a | 143 | A143A | gcC | gcT | 7 | 7 | P.1.15 | 0.001626 |
ORF3a | 143 | A143A | gcC | gcT | 6 | 6 | AY.100 | 0.000276 |
ORF3a | 143 | A143S | Gcc | Tcc | 6 | 6 | AY.3 | 0.00006 |
ORF3a | 143 | A143S | Gcc | Tcc | 6 | 6 | AY.3.1 | 0.000512 |
ORF3a | 143 | A143V | gCc | gTc | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 143 | A143T | Gcc | Acc | 6 | 6 | AY.67 | 0.002786 |
ORF3a | 143 | A143V | gCc | gTc | 6 | 6 | B.1.1.317 | 0.00247 |
ORF3a | 143 | A143V | gCc | gTc | 6 | 6 | Q.3 | 0.00087 |
ORF3a | 143 | A143G | gCc | gGc | 5 | 5 | All | 0.000001 |
ORF3a | 143 | A143A | gcC | gcT | 4 | 5 | AY.103 | 0.000025 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 5 | AY.103 | 0.000006 |
ORF3a | 143 | A143V | gCc | gTc | 5 | 5 | AY.35 | 0.001165 |
ORF3a | 143 | A143del | GCC | --- | 5 | 5 | AY.4 | 0.000008 |
ORF3a | 143 | A143V | gCc | gTc | 5 | 5 | AY.4.2 | 0.000108 |
ORF3a | 143 | A143V | gCc | gTc | 5 | 5 | AY.5 | 0.000103 |
ORF3a | 143 | A143T | Gcc | Acc | 5 | 5 | B.1.1 | 0.000091 |
ORF3a | 143 | A143S | Gcc | Tcc | 4 | 5 | B.1.1 | 0.000073 |
ORF3a | 143 | A143S | GcC | TcA | 1 | 5 | B.1.1 | 0.000018 |
ORF3a | 143 | A143D | gCc | gAc | 5 | 5 | B.1.160 | 0.000156 |
ORF3a | 143 | A143del | GCC | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 143 | A143V | gCc | gTc | 5 | 5 | B.1.232 | 0.002687 |
ORF3a | 143 | A143S | Gcc | Tcc | 5 | 5 | B.1.466.2 | 0.001956 |
ORF3a | 143 | A143T | Gcc | Acc | 5 | 5 | B.1.621 | 0.000443 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 4 | AY.117 | 0.000169 |
ORF3a | 143 | A143A | gcC | gcA | 2 | 4 | AY.117 | 0.000169 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 4 | AY.119 | 0.000071 |
ORF3a | 143 | A143A | gcC | gcA | 2 | 4 | AY.119 | 0.000071 |
ORF3a | 143 | A143S | Gcc | Tcc | 4 | 4 | AY.29 | 0.000063 |
ORF3a | 143 | A143A | gcC | gcT | 3 | 4 | AY.39 | 0.000074 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 4 | AY.39 | 0.000025 |
ORF3a | 143 | A143V | gCc | gTc | 4 | 4 | AZ.1 | 0.003469 |
ORF3a | 143 | A143S | Gcc | Tcc | 4 | 4 | B.1.1.294 | 0.005063 |
ORF3a | 143 | A143D | gCc | gAc | 4 | 4 | B.1.258.17 | 0.000416 |
ORF3a | 143 | A143A | gcC | gcT | 4 | 4 | B.1.466.2 | 0.001565 |
ORF3a | 143 | A143A | gcC | gcA | 2 | 4 | B.1.526 | 0.000047 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 4 | B.1.526 | 0.000047 |
ORF3a | 143 | A143E | gCC | gAA | 4 | 4 | B.1.600 | 0.023392 |
ORF3a | 143 | A143A | gcC | gcT | 4 | 4 | B.1.623 | 0.002146 |
ORF3a | 143 | A143del1 | Gcc | -cc | 3 | 3 | All | 0.000001 |
ORF3a | 143 | A143S | Gcc | Tcc | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 143 | A143del | GCC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 143 | A143A | gcC | gcT | 3 | 3 | AY.29 | 0.000047 |
ORF3a | 143 | A143V | gCc | gTc | 3 | 3 | AY.3.1 | 0.000256 |
ORF3a | 143 | A143S | Gcc | Tcc | 3 | 3 | AY.33 | 0.0002 |
ORF3a | 143 | A143D | gCc | gAc | 3 | 3 | AY.33 | 0.0002 |
ORF3a | 143 | A143D | gCc | gAc | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 143 | A143D | gCc | gAc | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 143 | A143V | gCc | gTc | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 143 | A143D | gCc | gAc | 3 | 3 | AY.5 | 0.000062 |
ORF3a | 143 | A143A | gcC | gcA | 2 | 3 | AY.98.1 | 0.000097 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 3 | AY.98.1 | 0.000048 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 3 | B | 0.000128 |
ORF3a | 143 | A143A | gcC | gcG | 1 | 3 | B | 0.000128 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 3 | B | 0.000128 |
ORF3a | 143 | A143V | gCc | gTc | 3 | 3 | B.1 | 0.000027 |
ORF3a | 143 | A143T | Gcc | Acc | 3 | 3 | B.1.1.220 | 0.005576 |
ORF3a | 143 | A143T | Gcc | Acc | 3 | 3 | B.1.1.515 | 0.06 |
ORF3a | 143 | A143A | gcC | gcT | 3 | 3 | B.1.177.12 | 0.000455 |
ORF3a | 143 | A143V | gCc | gTc | 3 | 3 | B.1.177.45 | 0.001144 |
ORF3a | 143 | A143T | Gcc | Acc | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 3 | B.1.427 | 0.000101 |
ORF3a | 143 | A143A | gcC | gcG | 1 | 3 | B.1.427 | 0.00005 |
ORF3a | 143 | A143V | gCc | gTc | 3 | 3 | B.1.524 | 0.004219 |
ORF3a | 143 | A143del | GCC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 143 | A143D | gCc | gAc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 143 | A143A | gcC | gcT | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 143 | A143A | gcC | gcT | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 143 | A143V | gCc | gTc | 3 | 3 | P.1 | 0.000047 |
ORF3a | 143 | A143del | GCC | --- | 2 | 2 | 0.111111 | |
ORF3a | 143 | A143N | GCc | AAc | 2 | 2 | All | 0 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 143 | A143T | Gcc | Acc | 2 | 2 | AY.119 | 0.000071 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 143 | A143T | Gcc | Acc | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 143 | A143D | gCc | gAc | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 143 | A143S | Gcc | Tcc | 2 | 2 | AY.64 | 0.00119 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 143 | A143A | gcC | gcA | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 143 | A143D | gCc | gAc | 2 | 2 | B.1 | 0.000018 |
ORF3a | 143 | A143D | gCc | gAc | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 143 | A143E | gCC | gAA | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 143 | A143S | Gcc | Tcc | 2 | 2 | B.1.1.277 | 0.001517 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 143 | A143T | Gcc | Acc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF3a | 143 | A143del | GCC | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | B.1.1.325 | 0.051282 |
ORF3a | 143 | A143D | gCc | gAc | 2 | 2 | B.1.1.39 | 0.001019 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | B.1.1.420 | 0.002012 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 143 | A143P | Gcc | Ccc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 143 | A143del | GCC | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF3a | 143 | A143S | Gcc | Tcc | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 143 | A143del | GCC | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 143 | A143T | Gcc | Acc | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 143 | A143S | Gcc | Tcc | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 143 | A143S | Gcc | Tcc | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 143 | A143T | Gcc | Acc | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 143 | A143T | Gcc | Acc | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 143 | A143del | GCC | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 143 | A143T | Gcc | Acc | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 143 | A143S | Gcc | Tcc | 2 | 2 | B.1.609 | 0.000959 |
ORF3a | 143 | A143del | GCC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 143 | A143V | gCc | gTc | 2 | 2 | C.36 | 0.001821 |
ORF3a | 143 | A143T | Gcc | Acc | 2 | 2 | D.2 | 0.00015 |
ORF3a | 143 | A143del | GCC | --- | 2 | 2 | P.1 | 0.000032 |
ORF3a | 143 | A143A | gcC | gcT | 2 | 2 | P.1.14 | 0.000096 |
ORF3a | 143 | A143del | GCC | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 143 | A143D | gCc | gAc | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 143 | A143E | gCC | gAA | 2 | 2 | Q.1 | 0.000253 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | A | 0.000387 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | A | 0.000387 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 143 | A143E | gCC | gAA | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 143 | A143C | GCc | TGc | 1 | 1 | All | 0 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AU.3 | 0.00211 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | AW.1 | 0.003049 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 143 | A143E | gCC | gAA | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 143 | A143A | gcC | gcG | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 143 | A143del1 | Gcc | -cc | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 143 | A143del1 | Gcc | -cc | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 143 | A143P | Gcc | Ccc | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 143 | A143E | gCC | gAA | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 143 | A143G | gCc | gGc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.46.3 | 0.000934 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.81 | 0.001992 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B | 0.000128 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B | 0.000128 |
ORF3a | 143 | A143C | GCc | TGc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 143 | A143G | gCc | gGc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 143 | A143N | GCc | AAc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 143 | A143P | Gcc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 143 | A143N | GCc | AAc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.1.196 | 0.005714 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.1.251 | 0.007937 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.1.269 | 0.001353 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 143 | A143P | Gcc | Ccc | 1 | 1 | B.1.1.289 | 0.002083 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 143 | A143E | gCC | gAA | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.1.413 | 0.006897 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.1.46 | 0.004367 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 143 | A143G | gCc | gGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 143 | A143del1 | Gcc | -cc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 143 | A143G | gCc | gGc | 1 | 1 | B.1.146 | 0.004237 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 143 | A143P | Gcc | Ccc | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.160.14 | 0.002119 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.160.15 | 0.00495 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.160.9 | 0.007194 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 143 | A143V | gCC | gTA | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.177.89 | 0.02439 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 143 | A143A | gcC | gcG | 1 | 1 | B.1.223 | 0.002778 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.258.12 | 0.007874 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.280 | 0.007143 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 143 | A143A | gcC | gcG | 1 | 1 | B.1.450 | 0.011364 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.556 | 0.007519 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | B.1.78 | 0.008547 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | B.1.8 | 0.001972 |
ORF3a | 143 | A143A | gcC | gcA | 1 | 1 | B.6 | 0.00091 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | C.37 | 0.000116 |
ORF3a | 143 | A143G | gCc | gGc | 1 | 1 | D.2 | 0.000075 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | D.2 | 0.000075 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | D.2 | 0.000075 |
ORF3a | 143 | A143D | gCc | gAc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF3a | 143 | A143A | gcC | gcT | 1 | 1 | Q.3 | 0.000145 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 143 | A143V | gCc | gTc | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 143 | A143T | Gcc | Acc | 1 | 1 | R.1 | 0.00009 |
ORF3a | 143 | A143S | Gcc | Tcc | 1 | 1 | R.1 | 0.00009 |
ORF3a | 143 | A143del | GCC | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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