CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 137

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a137N137NsynaaCaaT10791079125801-25803
ORF3a137N137YnonsynAacTac143143125801-25803
ORF3a137N137KnonsynaaCaaA1321230.93181825801-25803
ORF3a137N137KnonsynaaCaaG13290.068181825801-25803
ORF3a137N137deldelAAC---8181125801-25803
ORF3a137N137DnonsynAacGac6868125801-25803
ORF3a137N137SnonsynaAcaGc6767125801-25803
ORF3a137N137TnonsynaAcaCc2828125801-25803
ORF3a137N137HnonsynAacCac2020125801-25803
ORF3a137N137InonsynaAcaTc1090.925801-25803
ORF3a137N137InonsynaACaTA1010.125801-25803
ORF3a137N137del1delaaCaa-540.825801-25803
ORF3a137N137del1delAac-ac510.225801-25803
ORF3a137N137del2delaACa--11125801-25803
ORF3a137N137GnonsynAACGGG11125801-25803

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a137N137NaaCaaT10791079All0.000206
ORF3a137N137NaaCaaT200200B.1.1.70.000179
ORF3a137N137YAacTac143143All0.000027
ORF3a137N137KaaCaaA123132All0.000024
ORF3a137N137KaaCaaG9132All0.000002
ORF3a137N137NaaCaaT102102AY.40.000159
ORF3a137N137YAacTac8484B.1.1.3630.502994
ORF3a137N137delAAC---8181All0.000015
ORF3a137N137DAacGac6868All0.000013
ORF3a137N137SaAcaGc6767All0.000013
ORF3a137N137NaaCaaT6767AY.1030.000416
ORF3a137N137NaaCaaT6565B.1.20.000572
ORF3a137N137NaaCaaT5555B.1.4290.001294
ORF3a137N137NaaCaaT3838B.1.1770.0005
ORF3a137N137NaaCaaT3636B.1.617.20.000136
ORF3a137N137NaaCaaT3333B.1.10.000599
ORF3a137N137NaaCaaT3232AY.430.000142
ORF3a137N137NaaCaaT3131AY.30.000308
ORF3a137N137TaAcaCc2828All0.000005
ORF3a137N137NaaCaaT2626AY.440.000158
ORF3a137N137KaaCaaA2626B.1.1.70.000023
ORF3a137N137NaaCaaT2424AY.250.000144
ORF3a137N137NaaCaaT2121B.1.2130.313433
ORF3a137N137HAacCac2020All0.000004
ORF3a137N137delAAC---2020B.1.1.70.000018
ORF3a137N137NaaCaaT2020B.1.416.10.03125
ORF3a137N137NaaCaaT1818AY.4.10.013274
ORF3a137N137NaaCaaT1818B.10.000165
ORF3a137N137NaaCaaT1818B.1.5750.005461
ORF3a137N137KaaCaaA1717AY.40.000026
ORF3a137N137NaaCaaT1616AY.1130.002278
ORF3a137N137DAacGac1616AY.260.000453
ORF3a137N137SaAcaGc1515B.1.3110.004119
ORF3a137N137NaaCaaT1515P.10.000236
ORF3a137N137KaaCaaA1414AY.470.000435
ORF3a137N137NaaCaaT1414AY.9.20.000514
ORF3a137N137YAacTac1313B.1.617.20.000049
ORF3a137N137DAacGac1212B.1.1.70.000011
ORF3a137N137SaAcaGc1111B.1.1.70.00001
ORF3a137N137NaaCaaT1111B.1.6370.000804
ORF3a137N137IaAcaTc910All0.000002
ORF3a137N137IaACaTA110All0
ORF3a137N137NaaCaaT1010AY.1190.000353
ORF3a137N137NaaCaaT1010AY.200.000389
ORF3a137N137NaaCaaT1010AY.9.10.000837
ORF3a137N137NaaCaaT99AY.120.10.002889
ORF3a137N137NaaCaaT99AY.680.002464
ORF3a137N137KaaCaaA99AY.99.20.000829
ORF3a137N137KaaCaaA99B.1.617.20.000034
ORF3a137N137NaaCaaT88AY.60.000329
ORF3a137N137delAAC---88B.10.000073
ORF3a137N137KaaCaaA68B.10.000055
ORF3a137N137KaaCaaG28B.10.000018
ORF3a137N137KaaCaaA67AY.30.00006
ORF3a137N137KaaCaaG17AY.30.00001
ORF3a137N137DAacGac77AY.40.000011
ORF3a137N137YAacTac77AY.430.000031
ORF3a137N137NaaCaaT77B.1.5760.006346
ORF3a137N137TaAcaCc77B.1.6210.00062
ORF3a137N137SaAcaGc77P.1.60.013619
ORF3a137N137NaaCaaT66AY.690.00112
ORF3a137N137YAacTac66B.1.1.70.000005
ORF3a137N137NaaCaaT66B.1.3510.000178
ORF3a137N137NaaCaaT66B.1.5260.000141
ORF3a137N137NaaCaaT66C.370.000696
ORF3a137N137del1aaCaa-45All0.000001
ORF3a137N137del1Aac-ac15All0
ORF3a137N137delAAC---55AY.40.000008
ORF3a137N137SaAcaGc55AY.40.000008
ORF3a137N137delAAC---55AY.430.000022
ORF3a137N137DAacGac55AY.70.00098
ORF3a137N137TaAcaCc55B.1.1.70.000004
ORF3a137N137NaaCaaT55B.1.4270.000252
ORF3a137N137KaaCaaA55Q.70.005556
ORF3a137N137YAacTac44AE.80.001956
ORF3a137N137NaaCaaT44AY.260.000113
ORF3a137N137NaaCaaT44AY.390.000099
ORF3a137N137KaaCaaA44AY.440.000024
ORF3a137N137YAacTac44AY.470.000124
ORF3a137N137NaaCaaT44AY.980.000316
ORF3a137N137DAacGac44B.10.000037
ORF3a137N137HAacCac44B.1.10.000073
ORF3a137N137IaAcaTc44B.1.10.000073
ORF3a137N137DAacGac44B.1.1.630.001543
ORF3a137N137SaAcaGc44B.1.1.700.001364
ORF3a137N137NaaCaaT44B.1.1600.000125
ORF3a137N137delAAC---44B.1.1770.000053
ORF3a137N137NaaCaaT44B.1.3960.002823
ORF3a137N137HAacCac44B.1.617.20.000015
ORF3a137N137NaaCaaT33AD.20.000657
ORF3a137N137YAacTac33AY.1190.000106
ORF3a137N137NaaCaaT33AY.290.000047
ORF3a137N137NaaCaaT33AY.360.000445
ORF3a137N137YAacTac33AY.40.000005
ORF3a137N137SaAcaGc33AY.430.000013
ORF3a137N137DAacGac33AY.430.000013
ORF3a137N137NaaCaaT33AY.46.40.000494
ORF3a137N137NaaCaaT33AY.620.001307
ORF3a137N137NaaCaaT33AY.99.20.000276
ORF3a137N137YAacTac33B.1.10.000054
ORF3a137N137IaAcaTc33B.1.1.70.000003
ORF3a137N137NaaCaaT33B.1.36.180.001261
ORF3a137N137delAAC---33B.1.617.20.000011
ORF3a137N137SaAcaGc33B.1.617.20.000011
ORF3a137N137NaaCaaT33B.1.6210.000266
ORF3a137N137DAacGac33P.10.000047
ORF3a137N137HAacCac33P.10.000047
ORF3a137N137YAacTac33P.20.00056
ORF3a137N137delAAC---220.111111
ORF3a137N137KaaCaaG220.111111
ORF3a137N137NaaCaaT22A.30.004193
ORF3a137N137YAacTac22AY.1020.000053
ORF3a137N137KaaCaaA22AY.1030.000012
ORF3a137N137NaaCaaT22AY.1180.000125
ORF3a137N137NaaCaaT22AY.1200.000074
ORF3a137N137SaAcaGc22AY.130.000322
ORF3a137N137KaaCaaA22AY.200.000078
ORF3a137N137NaaCaaT22AY.230.000139
ORF3a137N137NaaCaaT22AY.240.000862
ORF3a137N137HAacCac22AY.250.000012
ORF3a137N137DAacGac22AY.30.00002
ORF3a137N137NaaCaaT22AY.370.000632
ORF3a137N137delAAC---22AY.4.50.000215
ORF3a137N137TaAcaCc22AY.430.000009
ORF3a137N137NaaCaaT22AY.470.000062
ORF3a137N137HAacCac22AY.50.000041
ORF3a137N137KaaCaaA22AY.700.000417
ORF3a137N137NaaCaaT22AY.730.001331
ORF3a137N137SaAcaGc22B.10.000018
ORF3a137N137TaAcaCc22B.1.10.000036
ORF3a137N137KaaCaaA12B.1.10.000018
ORF3a137N137KaaCaaG12B.1.10.000018
ORF3a137N137NaaCaaT22B.1.1.2220.000408
ORF3a137N137NaaCaaT22B.1.1.3050.007722
ORF3a137N137delAAC---22B.1.1.3150.016949
ORF3a137N137NaaCaaT22B.1.1.3220.017544
ORF3a137N137HAacCac22B.1.20.000018
ORF3a137N137IaACaTA12B.1.2140.003663
ORF3a137N137IaAcaTc12B.1.2140.003663
ORF3a137N137SaAcaGc22B.1.2210.000142
ORF3a137N137KaaCaaG12B.1.4270.00005
ORF3a137N137KaaCaaA12B.1.4270.00005
ORF3a137N137delAAC---22B.1.5250.000226
ORF3a137N137SaAcaGc22B.1.5260.000047
ORF3a137N137NaaCaaT22B.1.5670.006667
ORF3a137N137SaAcaGc22B.1.5950.000522
ORF3a137N137delAAC---22B.1.6210.000177
ORF3a137N137NaaCaaT22B.1.6360.013423
ORF3a137N137TaAcaCc22B.6.60.001778
ORF3a137N137KaaCaaA22C.370.000232
ORF3a137N137delAAC---22P.10.000032
ORF3a137N137SaAcaGc22P.10.000032
ORF3a137N137NaaCaaT22P.1.140.000096
ORF3a137N137delAAC---22P.1.150.000465
ORF3a137N137delAAC---11A0.000387
ORF3a137N137delAAC---11AD.20.000219
ORF3a137N137GAACGGG11All0
ORF3a137N137del2aACa--11All0
ORF3a137N137KaaCaaA11AY.1000.000046
ORF3a137N137SaAcaGc11AY.1020.000027
ORF3a137N137NaaCaaT11AY.1020.000027
ORF3a137N137SaAcaGc11AY.1030.000006
ORF3a137N137DAacGac11AY.1030.000006
ORF3a137N137YAacTac11AY.1030.000006
ORF3a137N137KaaCaaA11AY.1060.000335
ORF3a137N137NaaCaaT11AY.1160.000287
ORF3a137N137NaaCaaT11AY.120.000316
ORF3a137N137SaAcaGc11AY.1200.000037
ORF3a137N137del1Aac-ac11AY.1200.000037
ORF3a137N137KaaCaaA11AY.1210.000135
ORF3a137N137NaaCaaT11AY.16.10.00047
ORF3a137N137TaAcaCc11AY.250.000006
ORF3a137N137YAacTac11AY.250.000006
ORF3a137N137KaaCaaA11AY.250.000006
ORF3a137N137delAAC---11AY.250.000006
ORF3a137N137delAAC---11AY.290.000016
ORF3a137N137DAacGac11AY.290.000016
ORF3a137N137SaAcaGc11AY.30.00001
ORF3a137N137YAacTac11AY.30.00001
ORF3a137N137HAacCac11AY.30.00001
ORF3a137N137TaAcaCc11AY.30.00001
ORF3a137N137DAacGac11AY.330.000067
ORF3a137N137KaaCaaA11AY.390.000025
ORF3a137N137DAacGac11AY.390.000025
ORF3a137N137delAAC---11AY.390.000025
ORF3a137N137KaaCaaA11AY.39.1.10.000725
ORF3a137N137del1aaCaa-11AY.4.10.000737
ORF3a137N137NaaCaaT11AY.4.20.000022
ORF3a137N137del1aaCaa-11AY.430.000004
ORF3a137N137TaAcaCc11AY.440.000006
ORF3a137N137YAacTac11AY.440.000006
ORF3a137N137NaaCaaT11AY.450.000122
ORF3a137N137KaaCaaA11AY.450.000122
ORF3a137N137NaaCaaT11AY.46.50.000198
ORF3a137N137NaaCaaT11AY.50.000021
ORF3a137N137delAAC---11AY.5.30.000337
ORF3a137N137NaaCaaT11AY.540.000095
ORF3a137N137YAacTac11AY.60.000041
ORF3a137N137delAAC---11AY.60.000041
ORF3a137N137TaAcaCc11AY.600.000938
ORF3a137N137NaaCaaT11AY.630.000387
ORF3a137N137delAAC---11AY.680.000274
ORF3a137N137NaaCaaT11AY.710.000475
ORF3a137N137NaaCaaT11AY.740.000116
ORF3a137N137KaaCaaA11AY.740.000116
ORF3a137N137NaaCaaT11AY.750.000056
ORF3a137N137NaaCaaT11AY.850.000427
ORF3a137N137NaaCaaT11AY.870.000833
ORF3a137N137NaaCaaT11AY.990.001049
ORF3a137N137delAAC---11B0.000128
ORF3a137N137TaAcaCc11B0.000128
ORF3a137N137KaaCaaA11B0.000128
ORF3a137N137YAacTac11B.10.000009
ORF3a137N137HAacCac11B.10.000009
ORF3a137N137DAacGac11B.1.10.000018
ORF3a137N137DAacGac11B.1.1.1280.007092
ORF3a137N137NaaCaaT11B.1.1.2040.00304
ORF3a137N137NaaCaaT11B.1.1.2190.005
ORF3a137N137DAacGac11B.1.1.2200.001859
ORF3a137N137NaaCaaT11B.1.1.2770.000759
ORF3a137N137YAacTac11B.1.1.290.010309
ORF3a137N137NaaCaaT11B.1.1.3170.000412
ORF3a137N137NaaCaaT11B.1.1.330.000421
ORF3a137N137DAacGac11B.1.1.330.000421
ORF3a137N137NaaCaaT11B.1.1.3540.004386
ORF3a137N137NaaCaaT11B.1.1.390.00051
ORF3a137N137delAAC---11B.1.1.4090.002833
ORF3a137N137delAAC---11B.1.1.4200.001006
ORF3a137N137NaaCaaT11B.1.1.5190.00004
ORF3a137N137KaaCaaA11B.1.1.5190.00004
ORF3a137N137HAacCac11B.1.1.70.000001
ORF3a137N137GAACGGG11B.1.1.70.000001
ORF3a137N137KaaCaaA11B.1.120.008
ORF3a137N137delAAC---11B.1.1400.018868
ORF3a137N137NaaCaaT11B.1.1430.021277
ORF3a137N137KaaCaaA11B.1.1490.003425
ORF3a137N137delAAC---11B.1.1600.000031
ORF3a137N137KaaCaaA11B.1.160.200.008929
ORF3a137N137delAAC---11B.1.160.230.004831
ORF3a137N137NaaCaaT11B.1.160.320.004292
ORF3a137N137TaAcaCc11B.1.160.90.007194
ORF3a137N137SaAcaGc11B.1.1770.000013
ORF3a137N137del1aaCaa-11B.1.1770.000013
ORF3a137N137DAacGac11B.1.1770.000013
ORF3a137N137YAacTac11B.1.177.110.001698
ORF3a137N137NaaCaaT11B.1.177.170.000821
ORF3a137N137NaaCaaT11B.1.177.40.000211
ORF3a137N137NaaCaaT11B.1.177.440.000519
ORF3a137N137delAAC---11B.1.177.510.004566
ORF3a137N137NaaCaaT11B.1.177.540.000606
ORF3a137N137delAAC---11B.1.177.620.001192
ORF3a137N137NaaCaaT11B.1.177.730.000566
ORF3a137N137TaAcaCc11B.1.20.000009
ORF3a137N137KaaCaaA11B.1.20.000009
ORF3a137N137SaAcaGc11B.1.20.000009
ORF3a137N137KaaCaaA11B.1.2140.003663
ORF3a137N137del2aACa--11B.1.2210.000071
ORF3a137N137NaaCaaT11B.1.2210.000071
ORF3a137N137KaaCaaA11B.1.2210.000071
ORF3a137N137NaaCaaT11B.1.2430.00007
ORF3a137N137SaAcaGc11B.1.2430.00007
ORF3a137N137YAacTac11B.1.2580.000067
ORF3a137N137NaaCaaT11B.1.258.170.000104
ORF3a137N137NaaCaaT11B.1.2600.003344
ORF3a137N137NaaCaaT11B.1.2790.000514
ORF3a137N137YAacTac11B.1.3130.006579
ORF3a137N137NaaCaaT11B.1.3290.000608
ORF3a137N137KaaCaaG11B.1.351.30.000876
ORF3a137N137NaaCaaT11B.1.360.000146
ORF3a137N137NaaCaaT11B.1.3690.000285
ORF3a137N137NaaCaaT11B.1.3770.004566
ORF3a137N137NaaCaaT11B.1.3890.001002
ORF3a137N137delAAC---11B.1.416.10.001563
ORF3a137N137DAacGac11B.1.4270.00005
ORF3a137N137TaAcaCc11B.1.4290.000024
ORF3a137N137NaaCaaT11B.1.4990.00105
ORF3a137N137NaaCaaT11B.1.5250.000113
ORF3a137N137KaaCaaA11B.1.5250.000113
ORF3a137N137NaaCaaT11B.1.5510.00129
ORF3a137N137del1aaCaa-11B.1.5760.000907
ORF3a137N137NaaCaaT11B.1.5800.004065
ORF3a137N137KaaCaaG11B.1.5820.000491
ORF3a137N137IaAcaTc11B.1.5820.000491
ORF3a137N137NaaCaaT11B.1.5950.000261
ORF3a137N137NaaCaaT11B.1.5960.000087
ORF3a137N137delAAC---11B.1.5960.000087
ORF3a137N137TaAcaCc11B.1.617.10.000129
ORF3a137N137delAAC---11B.1.617.10.000129
ORF3a137N137NaaCaaT11B.1.617.10.000129
ORF3a137N137delAAC---11B.1.6380.052632
ORF3a137N137TaAcaCc11B.60.00091
ORF3a137N137NaaCaaT11B.60.00091
ORF3a137N137NaaCaaT11C.36.30.000567
ORF3a137N137DAacGac11D.20.000075
ORF3a137N137NaaCaaT11P.1.150.000232
ORF3a137N137DAacGac11P.1.170.000162
ORF3a137N137NaaCaaT11P.1.20.001156
ORF3a137N137NaaCaaT11P.20.000187
ORF3a137N137NaaCaaT11P.70.004367
ORF3a137N137YAacTac11Q.40.000455
ORF3a137N137delAAC---11Q.40.000455
ORF3a137N137NaaCaaT11R.10.00009
ORF3a137N137delAAC---11U.30.003861