CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 137

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF3a	137	N137N		syn	aaC	aaT	1079	1079	1	25801-25803
ORF3a	137	N137Y		nonsyn	Aac	Tac	143	143	1	25801-25803
ORF3a	137	N137K		nonsyn	aaC	aaA	132	123	0.931818	25801-25803
ORF3a	137	N137K		nonsyn	aaC	aaG	132	9	0.0681818	25801-25803
ORF3a	137	N137del		del	AAC	---	81	81	1	25801-25803
ORF3a	137	N137D		nonsyn	Aac	Gac	68	68	1	25801-25803
ORF3a	137	N137S		nonsyn	aAc	aGc	67	67	1	25801-25803
ORF3a	137	N137T		nonsyn	aAc	aCc	28	28	1	25801-25803
ORF3a	137	N137H		nonsyn	Aac	Cac	20	20	1	25801-25803
ORF3a	137	N137I		nonsyn	aAc	aTc	10	9	0.9	25801-25803
ORF3a	137	N137I		nonsyn	aAC	aTA	10	1	0.1	25801-25803
ORF3a	137	N137del1		del	aaC	aa-	5	4	0.8	25801-25803
ORF3a	137	N137del1		del	Aac	-ac	5	1	0.2	25801-25803
ORF3a	137	N137del2		del	aAC	a--	1	1	1	25801-25803
ORF3a	137	N137G		nonsyn	AAC	GGG	1	1	1	25801-25803

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF3a	137	N137N	aaC	aaT	1079	1079	All	0.000206
ORF3a	137	N137N	aaC	aaT	200	200	B.1.1.7	0.000179
ORF3a	137	N137Y	Aac	Tac	143	143	All	0.000027
ORF3a	137	N137K	aaC	aaA	123	132	All	0.000024
ORF3a	137	N137K	aaC	aaG	9	132	All	0.000002
ORF3a	137	N137N	aaC	aaT	102	102	AY.4	0.000159
ORF3a	137	N137Y	Aac	Tac	84	84	B.1.1.363	0.502994
ORF3a	137	N137del	AAC	---	81	81	All	0.000015
ORF3a	137	N137D	Aac	Gac	68	68	All	0.000013
ORF3a	137	N137S	aAc	aGc	67	67	All	0.000013
ORF3a	137	N137N	aaC	aaT	67	67	AY.103	0.000416
ORF3a	137	N137N	aaC	aaT	65	65	B.1.2	0.000572
ORF3a	137	N137N	aaC	aaT	55	55	B.1.429	0.001294
ORF3a	137	N137N	aaC	aaT	38	38	B.1.177	0.0005
ORF3a	137	N137N	aaC	aaT	36	36	B.1.617.2	0.000136
ORF3a	137	N137N	aaC	aaT	33	33	B.1.1	0.000599
ORF3a	137	N137N	aaC	aaT	32	32	AY.43	0.000142
ORF3a	137	N137N	aaC	aaT	31	31	AY.3	0.000308
ORF3a	137	N137T	aAc	aCc	28	28	All	0.000005
ORF3a	137	N137N	aaC	aaT	26	26	AY.44	0.000158
ORF3a	137	N137K	aaC	aaA	26	26	B.1.1.7	0.000023
ORF3a	137	N137N	aaC	aaT	24	24	AY.25	0.000144
ORF3a	137	N137N	aaC	aaT	21	21	B.1.213	0.313433
ORF3a	137	N137H	Aac	Cac	20	20	All	0.000004
ORF3a	137	N137del	AAC	---	20	20	B.1.1.7	0.000018
ORF3a	137	N137N	aaC	aaT	20	20	B.1.416.1	0.03125
ORF3a	137	N137N	aaC	aaT	18	18	AY.4.1	0.013274
ORF3a	137	N137N	aaC	aaT	18	18	B.1	0.000165
ORF3a	137	N137N	aaC	aaT	18	18	B.1.575	0.005461
ORF3a	137	N137K	aaC	aaA	17	17	AY.4	0.000026
ORF3a	137	N137N	aaC	aaT	16	16	AY.113	0.002278
ORF3a	137	N137D	Aac	Gac	16	16	AY.26	0.000453
ORF3a	137	N137S	aAc	aGc	15	15	B.1.311	0.004119
ORF3a	137	N137N	aaC	aaT	15	15	P.1	0.000236
ORF3a	137	N137K	aaC	aaA	14	14	AY.47	0.000435
ORF3a	137	N137N	aaC	aaT	14	14	AY.9.2	0.000514
ORF3a	137	N137Y	Aac	Tac	13	13	B.1.617.2	0.000049
ORF3a	137	N137D	Aac	Gac	12	12	B.1.1.7	0.000011
ORF3a	137	N137S	aAc	aGc	11	11	B.1.1.7	0.00001
ORF3a	137	N137N	aaC	aaT	11	11	B.1.637	0.000804
ORF3a	137	N137I	aAc	aTc	9	10	All	0.000002
ORF3a	137	N137I	aAC	aTA	1	10	All	0
ORF3a	137	N137N	aaC	aaT	10	10	AY.119	0.000353
ORF3a	137	N137N	aaC	aaT	10	10	AY.20	0.000389
ORF3a	137	N137N	aaC	aaT	10	10	AY.9.1	0.000837
ORF3a	137	N137N	aaC	aaT	9	9	AY.120.1	0.002889
ORF3a	137	N137N	aaC	aaT	9	9	AY.68	0.002464
ORF3a	137	N137K	aaC	aaA	9	9	AY.99.2	0.000829
ORF3a	137	N137K	aaC	aaA	9	9	B.1.617.2	0.000034
ORF3a	137	N137N	aaC	aaT	8	8	AY.6	0.000329
ORF3a	137	N137del	AAC	---	8	8	B.1	0.000073
ORF3a	137	N137K	aaC	aaA	6	8	B.1	0.000055
ORF3a	137	N137K	aaC	aaG	2	8	B.1	0.000018
ORF3a	137	N137K	aaC	aaA	6	7	AY.3	0.00006
ORF3a	137	N137K	aaC	aaG	1	7	AY.3	0.00001
ORF3a	137	N137D	Aac	Gac	7	7	AY.4	0.000011
ORF3a	137	N137Y	Aac	Tac	7	7	AY.43	0.000031
ORF3a	137	N137N	aaC	aaT	7	7	B.1.576	0.006346
ORF3a	137	N137T	aAc	aCc	7	7	B.1.621	0.00062
ORF3a	137	N137S	aAc	aGc	7	7	P.1.6	0.013619
ORF3a	137	N137N	aaC	aaT	6	6	AY.69	0.00112
ORF3a	137	N137Y	Aac	Tac	6	6	B.1.1.7	0.000005
ORF3a	137	N137N	aaC	aaT	6	6	B.1.351	0.000178
ORF3a	137	N137N	aaC	aaT	6	6	B.1.526	0.000141
ORF3a	137	N137N	aaC	aaT	6	6	C.37	0.000696
ORF3a	137	N137del1	aaC	aa-	4	5	All	0.000001
ORF3a	137	N137del1	Aac	-ac	1	5	All	0
ORF3a	137	N137del	AAC	---	5	5	AY.4	0.000008
ORF3a	137	N137S	aAc	aGc	5	5	AY.4	0.000008
ORF3a	137	N137del	AAC	---	5	5	AY.43	0.000022
ORF3a	137	N137D	Aac	Gac	5	5	AY.7	0.00098
ORF3a	137	N137T	aAc	aCc	5	5	B.1.1.7	0.000004
ORF3a	137	N137N	aaC	aaT	5	5	B.1.427	0.000252
ORF3a	137	N137K	aaC	aaA	5	5	Q.7	0.005556
ORF3a	137	N137Y	Aac	Tac	4	4	AE.8	0.001956
ORF3a	137	N137N	aaC	aaT	4	4	AY.26	0.000113
ORF3a	137	N137N	aaC	aaT	4	4	AY.39	0.000099
ORF3a	137	N137K	aaC	aaA	4	4	AY.44	0.000024
ORF3a	137	N137Y	Aac	Tac	4	4	AY.47	0.000124
ORF3a	137	N137N	aaC	aaT	4	4	AY.98	0.000316
ORF3a	137	N137D	Aac	Gac	4	4	B.1	0.000037
ORF3a	137	N137H	Aac	Cac	4	4	B.1.1	0.000073
ORF3a	137	N137I	aAc	aTc	4	4	B.1.1	0.000073
ORF3a	137	N137D	Aac	Gac	4	4	B.1.1.63	0.001543
ORF3a	137	N137S	aAc	aGc	4	4	B.1.1.70	0.001364
ORF3a	137	N137N	aaC	aaT	4	4	B.1.160	0.000125
ORF3a	137	N137del	AAC	---	4	4	B.1.177	0.000053
ORF3a	137	N137N	aaC	aaT	4	4	B.1.396	0.002823
ORF3a	137	N137H	Aac	Cac	4	4	B.1.617.2	0.000015
ORF3a	137	N137N	aaC	aaT	3	3	AD.2	0.000657
ORF3a	137	N137Y	Aac	Tac	3	3	AY.119	0.000106
ORF3a	137	N137N	aaC	aaT	3	3	AY.29	0.000047
ORF3a	137	N137N	aaC	aaT	3	3	AY.36	0.000445
ORF3a	137	N137Y	Aac	Tac	3	3	AY.4	0.000005
ORF3a	137	N137S	aAc	aGc	3	3	AY.43	0.000013
ORF3a	137	N137D	Aac	Gac	3	3	AY.43	0.000013
ORF3a	137	N137N	aaC	aaT	3	3	AY.46.4	0.000494
ORF3a	137	N137N	aaC	aaT	3	3	AY.62	0.001307
ORF3a	137	N137N	aaC	aaT	3	3	AY.99.2	0.000276
ORF3a	137	N137Y	Aac	Tac	3	3	B.1.1	0.000054
ORF3a	137	N137I	aAc	aTc	3	3	B.1.1.7	0.000003
ORF3a	137	N137N	aaC	aaT	3	3	B.1.36.18	0.001261
ORF3a	137	N137del	AAC	---	3	3	B.1.617.2	0.000011
ORF3a	137	N137S	aAc	aGc	3	3	B.1.617.2	0.000011
ORF3a	137	N137N	aaC	aaT	3	3	B.1.621	0.000266
ORF3a	137	N137D	Aac	Gac	3	3	P.1	0.000047
ORF3a	137	N137H	Aac	Cac	3	3	P.1	0.000047
ORF3a	137	N137Y	Aac	Tac	3	3	P.2	0.00056
ORF3a	137	N137del	AAC	---	2	2		0.111111
ORF3a	137	N137K	aaC	aaG	2	2		0.111111
ORF3a	137	N137N	aaC	aaT	2	2	A.3	0.004193
ORF3a	137	N137Y	Aac	Tac	2	2	AY.102	0.000053
ORF3a	137	N137K	aaC	aaA	2	2	AY.103	0.000012
ORF3a	137	N137N	aaC	aaT	2	2	AY.118	0.000125
ORF3a	137	N137N	aaC	aaT	2	2	AY.120	0.000074
ORF3a	137	N137S	aAc	aGc	2	2	AY.13	0.000322
ORF3a	137	N137K	aaC	aaA	2	2	AY.20	0.000078
ORF3a	137	N137N	aaC	aaT	2	2	AY.23	0.000139
ORF3a	137	N137N	aaC	aaT	2	2	AY.24	0.000862
ORF3a	137	N137H	Aac	Cac	2	2	AY.25	0.000012
ORF3a	137	N137D	Aac	Gac	2	2	AY.3	0.00002
ORF3a	137	N137N	aaC	aaT	2	2	AY.37	0.000632
ORF3a	137	N137del	AAC	---	2	2	AY.4.5	0.000215
ORF3a	137	N137T	aAc	aCc	2	2	AY.43	0.000009
ORF3a	137	N137N	aaC	aaT	2	2	AY.47	0.000062
ORF3a	137	N137H	Aac	Cac	2	2	AY.5	0.000041
ORF3a	137	N137K	aaC	aaA	2	2	AY.70	0.000417
ORF3a	137	N137N	aaC	aaT	2	2	AY.73	0.001331
ORF3a	137	N137S	aAc	aGc	2	2	B.1	0.000018
ORF3a	137	N137T	aAc	aCc	2	2	B.1.1	0.000036
ORF3a	137	N137K	aaC	aaA	1	2	B.1.1	0.000018
ORF3a	137	N137K	aaC	aaG	1	2	B.1.1	0.000018
ORF3a	137	N137N	aaC	aaT	2	2	B.1.1.222	0.000408
ORF3a	137	N137N	aaC	aaT	2	2	B.1.1.305	0.007722
ORF3a	137	N137del	AAC	---	2	2	B.1.1.315	0.016949
ORF3a	137	N137N	aaC	aaT	2	2	B.1.1.322	0.017544
ORF3a	137	N137H	Aac	Cac	2	2	B.1.2	0.000018
ORF3a	137	N137I	aAC	aTA	1	2	B.1.214	0.003663
ORF3a	137	N137I	aAc	aTc	1	2	B.1.214	0.003663
ORF3a	137	N137S	aAc	aGc	2	2	B.1.221	0.000142
ORF3a	137	N137K	aaC	aaG	1	2	B.1.427	0.00005
ORF3a	137	N137K	aaC	aaA	1	2	B.1.427	0.00005
ORF3a	137	N137del	AAC	---	2	2	B.1.525	0.000226
ORF3a	137	N137S	aAc	aGc	2	2	B.1.526	0.000047
ORF3a	137	N137N	aaC	aaT	2	2	B.1.567	0.006667
ORF3a	137	N137S	aAc	aGc	2	2	B.1.595	0.000522
ORF3a	137	N137del	AAC	---	2	2	B.1.621	0.000177
ORF3a	137	N137N	aaC	aaT	2	2	B.1.636	0.013423
ORF3a	137	N137T	aAc	aCc	2	2	B.6.6	0.001778
ORF3a	137	N137K	aaC	aaA	2	2	C.37	0.000232
ORF3a	137	N137del	AAC	---	2	2	P.1	0.000032
ORF3a	137	N137S	aAc	aGc	2	2	P.1	0.000032
ORF3a	137	N137N	aaC	aaT	2	2	P.1.14	0.000096
ORF3a	137	N137del	AAC	---	2	2	P.1.15	0.000465
ORF3a	137	N137del	AAC	---	1	1	A	0.000387
ORF3a	137	N137del	AAC	---	1	1	AD.2	0.000219
ORF3a	137	N137G	AAC	GGG	1	1	All	0
ORF3a	137	N137del2	aAC	a--	1	1	All	0
ORF3a	137	N137K	aaC	aaA	1	1	AY.100	0.000046
ORF3a	137	N137S	aAc	aGc	1	1	AY.102	0.000027
ORF3a	137	N137N	aaC	aaT	1	1	AY.102	0.000027
ORF3a	137	N137S	aAc	aGc	1	1	AY.103	0.000006
ORF3a	137	N137D	Aac	Gac	1	1	AY.103	0.000006
ORF3a	137	N137Y	Aac	Tac	1	1	AY.103	0.000006
ORF3a	137	N137K	aaC	aaA	1	1	AY.106	0.000335
ORF3a	137	N137N	aaC	aaT	1	1	AY.116	0.000287
ORF3a	137	N137N	aaC	aaT	1	1	AY.12	0.000316
ORF3a	137	N137S	aAc	aGc	1	1	AY.120	0.000037
ORF3a	137	N137del1	Aac	-ac	1	1	AY.120	0.000037
ORF3a	137	N137K	aaC	aaA	1	1	AY.121	0.000135
ORF3a	137	N137N	aaC	aaT	1	1	AY.16.1	0.00047
ORF3a	137	N137T	aAc	aCc	1	1	AY.25	0.000006
ORF3a	137	N137Y	Aac	Tac	1	1	AY.25	0.000006
ORF3a	137	N137K	aaC	aaA	1	1	AY.25	0.000006
ORF3a	137	N137del	AAC	---	1	1	AY.25	0.000006
ORF3a	137	N137del	AAC	---	1	1	AY.29	0.000016
ORF3a	137	N137D	Aac	Gac	1	1	AY.29	0.000016
ORF3a	137	N137S	aAc	aGc	1	1	AY.3	0.00001
ORF3a	137	N137Y	Aac	Tac	1	1	AY.3	0.00001
ORF3a	137	N137H	Aac	Cac	1	1	AY.3	0.00001
ORF3a	137	N137T	aAc	aCc	1	1	AY.3	0.00001
ORF3a	137	N137D	Aac	Gac	1	1	AY.33	0.000067
ORF3a	137	N137K	aaC	aaA	1	1	AY.39	0.000025
ORF3a	137	N137D	Aac	Gac	1	1	AY.39	0.000025
ORF3a	137	N137del	AAC	---	1	1	AY.39	0.000025
ORF3a	137	N137K	aaC	aaA	1	1	AY.39.1.1	0.000725
ORF3a	137	N137del1	aaC	aa-	1	1	AY.4.1	0.000737
ORF3a	137	N137N	aaC	aaT	1	1	AY.4.2	0.000022
ORF3a	137	N137del1	aaC	aa-	1	1	AY.43	0.000004
ORF3a	137	N137T	aAc	aCc	1	1	AY.44	0.000006
ORF3a	137	N137Y	Aac	Tac	1	1	AY.44	0.000006
ORF3a	137	N137N	aaC	aaT	1	1	AY.45	0.000122
ORF3a	137	N137K	aaC	aaA	1	1	AY.45	0.000122
ORF3a	137	N137N	aaC	aaT	1	1	AY.46.5	0.000198
ORF3a	137	N137N	aaC	aaT	1	1	AY.5	0.000021
ORF3a	137	N137del	AAC	---	1	1	AY.5.3	0.000337
ORF3a	137	N137N	aaC	aaT	1	1	AY.54	0.000095
ORF3a	137	N137Y	Aac	Tac	1	1	AY.6	0.000041
ORF3a	137	N137del	AAC	---	1	1	AY.6	0.000041
ORF3a	137	N137T	aAc	aCc	1	1	AY.60	0.000938
ORF3a	137	N137N	aaC	aaT	1	1	AY.63	0.000387
ORF3a	137	N137del	AAC	---	1	1	AY.68	0.000274
ORF3a	137	N137N	aaC	aaT	1	1	AY.71	0.000475
ORF3a	137	N137N	aaC	aaT	1	1	AY.74	0.000116
ORF3a	137	N137K	aaC	aaA	1	1	AY.74	0.000116
ORF3a	137	N137N	aaC	aaT	1	1	AY.75	0.000056
ORF3a	137	N137N	aaC	aaT	1	1	AY.85	0.000427
ORF3a	137	N137N	aaC	aaT	1	1	AY.87	0.000833
ORF3a	137	N137N	aaC	aaT	1	1	AY.99	0.001049
ORF3a	137	N137del	AAC	---	1	1	B	0.000128
ORF3a	137	N137T	aAc	aCc	1	1	B	0.000128
ORF3a	137	N137K	aaC	aaA	1	1	B	0.000128
ORF3a	137	N137Y	Aac	Tac	1	1	B.1	0.000009
ORF3a	137	N137H	Aac	Cac	1	1	B.1	0.000009
ORF3a	137	N137D	Aac	Gac	1	1	B.1.1	0.000018
ORF3a	137	N137D	Aac	Gac	1	1	B.1.1.128	0.007092
ORF3a	137	N137N	aaC	aaT	1	1	B.1.1.204	0.00304
ORF3a	137	N137N	aaC	aaT	1	1	B.1.1.219	0.005
ORF3a	137	N137D	Aac	Gac	1	1	B.1.1.220	0.001859
ORF3a	137	N137N	aaC	aaT	1	1	B.1.1.277	0.000759
ORF3a	137	N137Y	Aac	Tac	1	1	B.1.1.29	0.010309
ORF3a	137	N137N	aaC	aaT	1	1	B.1.1.317	0.000412
ORF3a	137	N137N	aaC	aaT	1	1	B.1.1.33	0.000421
ORF3a	137	N137D	Aac	Gac	1	1	B.1.1.33	0.000421
ORF3a	137	N137N	aaC	aaT	1	1	B.1.1.354	0.004386
ORF3a	137	N137N	aaC	aaT	1	1	B.1.1.39	0.00051
ORF3a	137	N137del	AAC	---	1	1	B.1.1.409	0.002833
ORF3a	137	N137del	AAC	---	1	1	B.1.1.420	0.001006
ORF3a	137	N137N	aaC	aaT	1	1	B.1.1.519	0.00004
ORF3a	137	N137K	aaC	aaA	1	1	B.1.1.519	0.00004
ORF3a	137	N137H	Aac	Cac	1	1	B.1.1.7	0.000001
ORF3a	137	N137G	AAC	GGG	1	1	B.1.1.7	0.000001
ORF3a	137	N137K	aaC	aaA	1	1	B.1.12	0.008
ORF3a	137	N137del	AAC	---	1	1	B.1.140	0.018868
ORF3a	137	N137N	aaC	aaT	1	1	B.1.143	0.021277
ORF3a	137	N137K	aaC	aaA	1	1	B.1.149	0.003425
ORF3a	137	N137del	AAC	---	1	1	B.1.160	0.000031
ORF3a	137	N137K	aaC	aaA	1	1	B.1.160.20	0.008929
ORF3a	137	N137del	AAC	---	1	1	B.1.160.23	0.004831
ORF3a	137	N137N	aaC	aaT	1	1	B.1.160.32	0.004292
ORF3a	137	N137T	aAc	aCc	1	1	B.1.160.9	0.007194
ORF3a	137	N137S	aAc	aGc	1	1	B.1.177	0.000013
ORF3a	137	N137del1	aaC	aa-	1	1	B.1.177	0.000013
ORF3a	137	N137D	Aac	Gac	1	1	B.1.177	0.000013
ORF3a	137	N137Y	Aac	Tac	1	1	B.1.177.11	0.001698
ORF3a	137	N137N	aaC	aaT	1	1	B.1.177.17	0.000821
ORF3a	137	N137N	aaC	aaT	1	1	B.1.177.4	0.000211
ORF3a	137	N137N	aaC	aaT	1	1	B.1.177.44	0.000519
ORF3a	137	N137del	AAC	---	1	1	B.1.177.51	0.004566
ORF3a	137	N137N	aaC	aaT	1	1	B.1.177.54	0.000606
ORF3a	137	N137del	AAC	---	1	1	B.1.177.62	0.001192
ORF3a	137	N137N	aaC	aaT	1	1	B.1.177.73	0.000566
ORF3a	137	N137T	aAc	aCc	1	1	B.1.2	0.000009
ORF3a	137	N137K	aaC	aaA	1	1	B.1.2	0.000009
ORF3a	137	N137S	aAc	aGc	1	1	B.1.2	0.000009
ORF3a	137	N137K	aaC	aaA	1	1	B.1.214	0.003663
ORF3a	137	N137del2	aAC	a--	1	1	B.1.221	0.000071
ORF3a	137	N137N	aaC	aaT	1	1	B.1.221	0.000071
ORF3a	137	N137K	aaC	aaA	1	1	B.1.221	0.000071
ORF3a	137	N137N	aaC	aaT	1	1	B.1.243	0.00007
ORF3a	137	N137S	aAc	aGc	1	1	B.1.243	0.00007
ORF3a	137	N137Y	Aac	Tac	1	1	B.1.258	0.000067
ORF3a	137	N137N	aaC	aaT	1	1	B.1.258.17	0.000104
ORF3a	137	N137N	aaC	aaT	1	1	B.1.260	0.003344
ORF3a	137	N137N	aaC	aaT	1	1	B.1.279	0.000514
ORF3a	137	N137Y	Aac	Tac	1	1	B.1.313	0.006579
ORF3a	137	N137N	aaC	aaT	1	1	B.1.329	0.000608
ORF3a	137	N137K	aaC	aaG	1	1	B.1.351.3	0.000876
ORF3a	137	N137N	aaC	aaT	1	1	B.1.36	0.000146
ORF3a	137	N137N	aaC	aaT	1	1	B.1.369	0.000285
ORF3a	137	N137N	aaC	aaT	1	1	B.1.377	0.004566
ORF3a	137	N137N	aaC	aaT	1	1	B.1.389	0.001002
ORF3a	137	N137del	AAC	---	1	1	B.1.416.1	0.001563
ORF3a	137	N137D	Aac	Gac	1	1	B.1.427	0.00005
ORF3a	137	N137T	aAc	aCc	1	1	B.1.429	0.000024
ORF3a	137	N137N	aaC	aaT	1	1	B.1.499	0.00105
ORF3a	137	N137N	aaC	aaT	1	1	B.1.525	0.000113
ORF3a	137	N137K	aaC	aaA	1	1	B.1.525	0.000113
ORF3a	137	N137N	aaC	aaT	1	1	B.1.551	0.00129
ORF3a	137	N137del1	aaC	aa-	1	1	B.1.576	0.000907
ORF3a	137	N137N	aaC	aaT	1	1	B.1.580	0.004065
ORF3a	137	N137K	aaC	aaG	1	1	B.1.582	0.000491
ORF3a	137	N137I	aAc	aTc	1	1	B.1.582	0.000491
ORF3a	137	N137N	aaC	aaT	1	1	B.1.595	0.000261
ORF3a	137	N137N	aaC	aaT	1	1	B.1.596	0.000087
ORF3a	137	N137del	AAC	---	1	1	B.1.596	0.000087
ORF3a	137	N137T	aAc	aCc	1	1	B.1.617.1	0.000129
ORF3a	137	N137del	AAC	---	1	1	B.1.617.1	0.000129
ORF3a	137	N137N	aaC	aaT	1	1	B.1.617.1	0.000129
ORF3a	137	N137del	AAC	---	1	1	B.1.638	0.052632
ORF3a	137	N137T	aAc	aCc	1	1	B.6	0.00091
ORF3a	137	N137N	aaC	aaT	1	1	B.6	0.00091
ORF3a	137	N137N	aaC	aaT	1	1	C.36.3	0.000567
ORF3a	137	N137D	Aac	Gac	1	1	D.2	0.000075
ORF3a	137	N137N	aaC	aaT	1	1	P.1.15	0.000232
ORF3a	137	N137D	Aac	Gac	1	1	P.1.17	0.000162
ORF3a	137	N137N	aaC	aaT	1	1	P.1.2	0.001156
ORF3a	137	N137N	aaC	aaT	1	1	P.2	0.000187
ORF3a	137	N137N	aaC	aaT	1	1	P.7	0.004367
ORF3a	137	N137Y	Aac	Tac	1	1	Q.4	0.000455
ORF3a	137	N137del	AAC	---	1	1	Q.4	0.000455
ORF3a	137	N137N	aaC	aaT	1	1	R.1	0.00009
ORF3a	137	N137del	AAC	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.