CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 136 & Codon = aCa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a136K136TnonsynaAaaCa50460.9225798-25800

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a136K136TaAaaCa4650All0.000009
ORF3a136K136TaAaaCa1212B.1.5250.001358
ORF3a136K136TaAaaCa66AY.1130.000854
ORF3a136K136TaAaaCa55AY.330.000334
ORF3a136K136TaAaaCa24AY.1030.000012
ORF3a136K136TaAaaCa44B.1.1770.000053
ORF3a136K136TaAaaCa13B.1.617.20.000004
ORF3a136K136TaAaaCa22AY.1100.000225
ORF3a136K136TaAaaCa22AY.40.000003
ORF3a136K136TaAaaCa22B.1.10.000036
ORF3a136K136TaAaaCa22B.1.1.70.000002
ORF3a136K136TaAaaCa11AY.1060.000335
ORF3a136K136TaAaaCa11AY.46.60.000072
ORF3a136K136TaAaaCa11AY.70.000196
ORF3a136K136TaAaaCa11B.1.1.5190.00004
ORF3a136K136TaAaaCa11B.1.177.40.000211
ORF3a136K136TaAaaCa11B.1.1880.016667
ORF3a136K136TaAaaCa11B.1.3510.00003
ORF3a136K136TaAaaCa11B.1.4000.000429

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.