CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 136

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a136K136EnonsynAaaGaa345345125798-25800
ORF3a136K136NnonsynaaAaaT2001850.92525798-25800
ORF3a136K136NnonsynaaAaaC200150.07525798-25800
ORF3a136K136KsynaaAaaG186186125798-25800
ORF3a136K136InonsynaAaaTa1441430.99305625798-25800
ORF3a136K136InonsynaAAaTT14410.0069444425798-25800
ORF3a136K136deldelAAA---7878125798-25800
ORF3a136K136RnonsynaAaaGa56550.98214325798-25800
ORF3a136K136RnonsynaAAaGG5610.017857125798-25800
ORF3a136K136LnonsynAAaCTa52500.96153825798-25800
ORF3a136K136LnonsynAAaTTa5220.038461525798-25800
ORF3a136K136TnonsynaAaaCa50460.9225798-25800
ORF3a136K136TnonsynaAAaCG5040.0825798-25800
ORF3a136K136del1delAaa-aa46440.95652225798-25800
ORF3a136K136del1delaaAaa-4610.021739125798-25800
ORF3a136K136del1delAAA-NN4610.021739125798-25800
ORF3a136K136QnonsynAaaCaa3939125798-25800
ORF3a136K136XnonsynAaaTaa1818125798-25800
ORF3a136K136del2delAAa--a88125798-25800
ORF3a136K136DnonsynAaAGaC11125798-25800
ORF3a136K136SnonsynAAaTCa11125798-25800
ORF3a136K136GnonsynAAAGGT11125798-25800

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a136K136EAaaGaa345345All0.000066
ORF3a136K136NaaAaaT185200All0.000035
ORF3a136K136NaaAaaC15200All0.000003
ORF3a136K136KaaAaaG186186All0.000036
ORF3a136K136IaAaaTa143144All0.000027
ORF3a136K136IaAAaTT1144All0
ORF3a136K136KaaAaaG134134B.1.1.70.00012
ORF3a136K136EAaaGaa111111AY.440.000676
ORF3a136K136NaaAaaT8484B.1.1.3630.502994
ORF3a136K136delAAA---7878All0.000015
ORF3a136K136EAaaGaa7373B.1.1.70.000065
ORF3a136K136EAaaGaa5858B.1.1.141
ORF3a136K136RaAaaGa5556All0.000011
ORF3a136K136RaAAaGG156All0
ORF3a136K136LAAaCTa5052All0.00001
ORF3a136K136LAAaTTa252All0
ORF3a136K136IaAaaTa5151B.1.4270.002575
ORF3a136K136TaAaaCa4650All0.000009
ORF3a136K136TaAAaCG450All0.000001
ORF3a136K136IaAaaTa5050B.1.1.70.000045
ORF3a136K136del1Aaa-aa4446All0.000008
ORF3a136K136del1aaAaa-146All0
ORF3a136K136del1AAA-NN146All0
ORF3a136K136NaaAaaT4343AY.30.000428
ORF3a136K136QAaaCaa3939All0.000007
ORF3a136K136RaAaaGa3232AY.230.002232
ORF3a136K136EAaaGaa3131B.10.000284
ORF3a136K136LAAaCTa2727B.1.1.70.000024
ORF3a136K136EAaaGaa2424B.1.360.003502
ORF3a136K136XAaaTaa1818All0.000003
ORF3a136K136delAAA---1717B.1.1.70.000015
ORF3a136K136TaAaaCa1212B.1.5250.001358
ORF3a136K136NaaAaaC611B.1.617.20.000023
ORF3a136K136NaaAaaT511B.1.617.20.000019
ORF3a136K136IaAaaTa910B.1.617.20.000034
ORF3a136K136IaAAaTT110B.1.617.20.000004
ORF3a136K136NaaAaaT79AY.40.000011
ORF3a136K136NaaAaaC29AY.40.000003
ORF3a136K136del2AAa--a88All0.000002
ORF3a136K136delAAA---88B.10.000073
ORF3a136K136del1Aaa-aa88B.1.1.70.000007
ORF3a136K136NaaAaaT88B.1.1600.00025
ORF3a136K136QAaaCaa77AY.40.000011
ORF3a136K136QAaaCaa77AY.430.000031
ORF3a136K136EAaaGaa77B.1.10.000127
ORF3a136K136NaaAaaT77B.1.1.3810.28
ORF3a136K136TaAaaCa66AY.1130.000854
ORF3a136K136KaaAaaG66AY.270.000388
ORF3a136K136KaaAaaG66AY.30.00006
ORF3a136K136XAaaTaa66AY.40.000009
ORF3a136K136RaAaaGa56B.1.1.70.000004
ORF3a136K136RaAAaGG16B.1.1.70.000001
ORF3a136K136IaAaaTa66B.1.1600.000187
ORF3a136K136EAaaGaa66B.1.20.000053
ORF3a136K136NaaAaaT55AY.250.00003
ORF3a136K136TaAaaCa55AY.330.000334
ORF3a136K136IaAaaTa55AY.40.000008
ORF3a136K136delAAA---55AY.40.000008
ORF3a136K136delAAA---55AY.430.000022
ORF3a136K136EAaaGaa55AY.98.10.000242
ORF3a136K136QAaaCaa55B.1.1.70.000004
ORF3a136K136NaaAaaT45B.1.1.70.000004
ORF3a136K136NaaAaaC15B.1.1.70.000001
ORF3a136K136KaaAaaG55B.1.258.170.00052
ORF3a136K136EAaaGaa55B.1.617.20.000019
ORF3a136K136KaaAaaG55P.10.000079
ORF3a136K136del1Aaa-aa44AY.1030.000025
ORF3a136K136TaAaaCa24AY.1030.000012
ORF3a136K136TaAAaCG24AY.1030.000012
ORF3a136K136IaAaaTa44AY.290.000063
ORF3a136K136LAAaCTa44AY.40.000006
ORF3a136K136del1Aaa-aa44AY.440.000024
ORF3a136K136NaaAaaT34AY.440.000018
ORF3a136K136NaaAaaC14AY.440.000006
ORF3a136K136NaaAaaT34B.1.10.000054
ORF3a136K136NaaAaaC14B.1.10.000018
ORF3a136K136TaAaaCa44B.1.1770.000053
ORF3a136K136delAAA---44B.1.1770.000053
ORF3a136K136del1Aaa-aa44B.1.20.000035
ORF3a136K136QAaaCaa44B.1.617.20.000015
ORF3a136K136LAAaCTa33AY.30.00003
ORF3a136K136KaaAaaG33B.10.000027
ORF3a136K136KaaAaaG33B.1.1.2140.000166
ORF3a136K136KaaAaaG33B.1.1600.000094
ORF3a136K136EAaaGaa33B.1.1770.00004
ORF3a136K136NaaAaaT33B.1.20.000026
ORF3a136K136del1Aaa-aa33B.1.617.20.000011
ORF3a136K136delAAA---33B.1.617.20.000011
ORF3a136K136TaAAaCG23B.1.617.20.000008
ORF3a136K136TaAaaCa13B.1.617.20.000004
ORF3a136K136NaaAaaT33P.10.000047
ORF3a136K136KaaAaaG33Q.30.000435
ORF3a136K136delAAA---220.111111
ORF3a136K136XAaaTaa220.111111
ORF3a136K136del1Aaa-aa220.111111
ORF3a136K136LAAaTTa220.111111
ORF3a136K136KaaAaaG22A.210.00554
ORF3a136K136LAAaCTa22AY.1020.000053
ORF3a136K136RaAaaGa22AY.1030.000012
ORF3a136K136TaAaaCa22AY.1100.000225
ORF3a136K136EAaaGaa22AY.1130.000285
ORF3a136K136RaAaaGa22AY.1190.000071
ORF3a136K136EAaaGaa22AY.1190.000071
ORF3a136K136LAAaCTa22AY.250.000012
ORF3a136K136QAaaCaa22AY.30.00002
ORF3a136K136EAaaGaa22AY.39.10.000079
ORF3a136K136KaaAaaG22AY.40.000003
ORF3a136K136TaAaaCa22AY.40.000003
ORF3a136K136delAAA---22AY.4.50.000215
ORF3a136K136LAAaCTa22AY.430.000009
ORF3a136K136EAaaGaa22AY.430.000009
ORF3a136K136del1Aaa-aa22AY.540.000191
ORF3a136K136KaaAaaG22AY.660.002139
ORF3a136K136LAAaCTa22AY.75.10.000361
ORF3a136K136QAaaCaa22B.10.000018
ORF3a136K136del1Aaa-aa22B.10.000018
ORF3a136K136TaAaaCa22B.1.10.000036
ORF3a136K136QAaaCaa22B.1.10.000036
ORF3a136K136NaaAaaT22B.1.1.2840.000215
ORF3a136K136delAAA---22B.1.1.3150.016949
ORF3a136K136TaAaaCa22B.1.1.70.000002
ORF3a136K136LAAaCTa22B.1.20.000018
ORF3a136K136RaAaaGa22B.1.20.000018
ORF3a136K136EAaaGaa22B.1.3110.000549
ORF3a136K136del1Aaa-aa22B.1.3510.000059
ORF3a136K136EAaaGaa22B.1.4560.006536
ORF3a136K136delAAA---22B.1.5250.000226
ORF3a136K136LAAaCTa22B.1.617.20.000008
ORF3a136K136KaaAaaG22B.1.617.20.000008
ORF3a136K136delAAA---22B.1.6210.000177
ORF3a136K136delAAA---22P.10.000032
ORF3a136K136delAAA---22P.1.150.000465
ORF3a136K136delAAA---11A0.000387
ORF3a136K136IaAaaTa11A.23.10.000704
ORF3a136K136del1aaAaa-11AD.20.000219
ORF3a136K136SAAaTCa11All0
ORF3a136K136DAaAGaC11All0
ORF3a136K136GAAAGGT11All0
ORF3a136K136del1AAA-NN11AV.10.005051
ORF3a136K136LAAaCTa11AY.100.00053
ORF3a136K136EAaaGaa11AY.1000.000046
ORF3a136K136EAaaGaa11AY.1020.000027
ORF3a136K136TaAaaCa11AY.1060.000335
ORF3a136K136RaAaaGa11AY.1070.000466
ORF3a136K136QAaaCaa11AY.1170.000085
ORF3a136K136del1Aaa-aa11AY.1180.000063
ORF3a136K136KaaAaaG11AY.1190.000035
ORF3a136K136NaaAaaT11AY.1190.000035
ORF3a136K136del1Aaa-aa11AY.1200.000037
ORF3a136K136delAAA---11AY.1200.000037
ORF3a136K136del1Aaa-aa11AY.120.10.000321
ORF3a136K136KaaAaaG11AY.210.001898
ORF3a136K136del1Aaa-aa11AY.230.00007
ORF3a136K136del2AAa--a11AY.230.00007
ORF3a136K136delAAA---11AY.250.000006
ORF3a136K136XAaaTaa11AY.250.000006
ORF3a136K136IaAaaTa11AY.260.000028
ORF3a136K136delAAA---11AY.290.000016
ORF3a136K136KaaAaaG11AY.290.000016
ORF3a136K136NaaAaaT11AY.290.000016
ORF3a136K136RaAaaGa11AY.30.00001
ORF3a136K136QAaaCaa11AY.3.10.000085
ORF3a136K136IaAaaTa11AY.320.000532
ORF3a136K136EAaaGaa11AY.340.000097
ORF3a136K136EAaaGaa11AY.390.000025
ORF3a136K136delAAA---11AY.390.000025
ORF3a136K136del2AAa--a11AY.390.000025
ORF3a136K136RaAaaGa11AY.40.000002
ORF3a136K136EAaaGaa11AY.40.000002
ORF3a136K136KaaAaaG11AY.4.10.000737
ORF3a136K136RaAaaGa11AY.4.10.000737
ORF3a136K136XAaaTaa11AY.4.20.000022
ORF3a136K136IaAaaTa11AY.4.20.000022
ORF3a136K136XAaaTaa11AY.4.2.10.000149
ORF3a136K136QAaaCaa11AY.4.30.000842
ORF3a136K136XAaaTaa11AY.430.000004
ORF3a136K136KaaAaaG11AY.430.000004
ORF3a136K136IaAaaTa11AY.430.000004
ORF3a136K136del2AAa--a11AY.450.000122
ORF3a136K136QAaaCaa11AY.460.000104
ORF3a136K136del2AAa--a11AY.46.50.000198
ORF3a136K136NaaAaaT11AY.46.50.000198
ORF3a136K136TaAaaCa11AY.46.60.000072
ORF3a136K136IaAaaTa11AY.470.000031
ORF3a136K136del1Aaa-aa11AY.470.000031
ORF3a136K136XAaaTaa11AY.50.000021
ORF3a136K136delAAA---11AY.5.30.000337
ORF3a136K136delAAA---11AY.60.000041
ORF3a136K136RaAaaGa11AY.60.000041
ORF3a136K136del1Aaa-aa11AY.610.000105
ORF3a136K136delAAA---11AY.680.000274
ORF3a136K136TaAaaCa11AY.70.000196
ORF3a136K136RaAaaGa11AY.750.000056
ORF3a136K136IaAaaTa11AY.75.10.00018
ORF3a136K136del1Aaa-aa11AY.75.10.00018
ORF3a136K136LAAaCTa11AY.840.000437
ORF3a136K136KaaAaaG11AY.880.000884
ORF3a136K136del1Aaa-aa11AY.9.20.000037
ORF3a136K136del1Aaa-aa11B0.000128
ORF3a136K136delAAA---11B0.000128
ORF3a136K136IaAaaTa11B.10.000009
ORF3a136K136del2AAa--a11B.1.10.000018
ORF3a136K136XAaaTaa11B.1.10.000018
ORF3a136K136KaaAaaG11B.1.10.000018
ORF3a136K136IaAaaTa11B.1.1.10.000327
ORF3a136K136NaaAaaC11B.1.1.10.000327
ORF3a136K136NaaAaaT11B.1.1.1530.001095
ORF3a136K136RaAaaGa11B.1.1.2070.001182
ORF3a136K136IaAaaTa11B.1.1.2220.000204
ORF3a136K136NaaAaaT11B.1.1.290.010309
ORF3a136K136RaAaaGa11B.1.1.390.00051
ORF3a136K136QAaaCaa11B.1.1.390.00051
ORF3a136K136delAAA---11B.1.1.4090.002833
ORF3a136K136delAAA---11B.1.1.4200.001006
ORF3a136K136IaAaaTa11B.1.1.4380.05
ORF3a136K136TaAaaCa11B.1.1.5190.00004
ORF3a136K136KaaAaaG11B.1.1.5190.00004
ORF3a136K136QAaaCaa11B.1.1.5210.005348
ORF3a136K136del2AAa--a11B.1.1.70.000001
ORF3a136K136DAaAGaC11B.1.1.70.000001
ORF3a136K136GAAAGGT11B.1.1.70.000001
ORF3a136K136delAAA---11B.1.1400.018868
ORF3a136K136delAAA---11B.1.1600.000031
ORF3a136K136delAAA---11B.1.160.230.004831
ORF3a136K136KaaAaaG11B.1.1770.000013
ORF3a136K136IaAaaTa11B.1.1770.000013
ORF3a136K136del2AAa--a11B.1.1770.000013
ORF3a136K136RaAaaGa11B.1.1770.000013
ORF3a136K136XAaaTaa11B.1.177.40.000211
ORF3a136K136SAAaTCa11B.1.177.40.000211
ORF3a136K136TaAaaCa11B.1.177.40.000211
ORF3a136K136delAAA---11B.1.177.510.004566
ORF3a136K136delAAA---11B.1.177.620.001192
ORF3a136K136NaaAaaC11B.1.177.70.000165
ORF3a136K136EAaaGaa11B.1.177.820.000477
ORF3a136K136TaAaaCa11B.1.1880.016667
ORF3a136K136QAaaCaa11B.1.1940.04
ORF3a136K136XAaaTaa11B.1.20.000009
ORF3a136K136del2AAa--a11B.1.20.000009
ORF3a136K136QAaaCaa11B.1.2400.000216
ORF3a136K136LAAaCTa11B.1.2580.000067
ORF3a136K136IaAaaTa11B.1.258.170.000104
ORF3a136K136NaaAaaT11B.1.3420.1
ORF3a136K136TaAaaCa11B.1.3510.00003
ORF3a136K136EAaaGaa11B.1.36.370.002778
ORF3a136K136del1Aaa-aa11B.1.36.80.001
ORF3a136K136TaAaaCa11B.1.4000.000429
ORF3a136K136delAAA---11B.1.416.10.001563
ORF3a136K136EAaaGaa11B.1.4250.002994
ORF3a136K136LAAaCTa11B.1.4270.00005
ORF3a136K136NaaAaaC11B.1.4290.000024
ORF3a136K136IaAaaTa11B.1.4370.020833
ORF3a136K136KaaAaaG11B.1.466.20.000391
ORF3a136K136del1Aaa-aa11B.1.5260.000024
ORF3a136K136RaAaaGa11B.1.5440.006024
ORF3a136K136NaaAaaT11B.1.5680.001111
ORF3a136K136EAaaGaa11B.1.5820.000491
ORF3a136K136del1Aaa-aa11B.1.5950.000261
ORF3a136K136IaAaaTa11B.1.5960.000087
ORF3a136K136delAAA---11B.1.5960.000087
ORF3a136K136RaAaaGa11B.1.5960.000087
ORF3a136K136QAaaCaa11B.1.6090.000479
ORF3a136K136delAAA---11B.1.617.10.000129
ORF3a136K136XAaaTaa11B.1.617.20.000004
ORF3a136K136RaAaaGa11B.1.6270.00202
ORF3a136K136delAAA---11B.1.6380.052632
ORF3a136K136IaAaaTa11C.140.004329
ORF3a136K136NaaAaaT11C.370.000116
ORF3a136K136QAaaCaa11N.30.005814
ORF3a136K136IaAaaTa11P.10.000016
ORF3a136K136EAaaGaa11P.10.000016
ORF3a136K136XAaaTaa11P.10.000016
ORF3a136K136del1Aaa-aa11P.10.000016
ORF3a136K136IaAaaTa11P.1.120.000484
ORF3a136K136NaaAaaC11Q.10.000126
ORF3a136K136delAAA---11Q.40.000455
ORF3a136K136delAAA---11U.30.003861