CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 131 | W131L | nonsyn | tGg | tTg | 6981 | 6981 | 1 | 25783-25785 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 131 | W131L | tGg | tTg | 6981 | 6981 | All | 0.001335 |
ORF3a | 131 | W131L | tGg | tTg | 3539 | 3539 | B.1.351 | 0.105202 |
ORF3a | 131 | W131L | tGg | tTg | 395 | 395 | AY.4 | 0.000615 |
ORF3a | 131 | W131L | tGg | tTg | 389 | 389 | B.1.243 | 0.027068 |
ORF3a | 131 | W131L | tGg | tTg | 279 | 279 | B.1.1.7 | 0.00025 |
ORF3a | 131 | W131L | tGg | tTg | 278 | 278 | B.1.617.2 | 0.001047 |
ORF3a | 131 | W131L | tGg | tTg | 235 | 235 | AY.43 | 0.001041 |
ORF3a | 131 | W131L | tGg | tTg | 201 | 201 | AY.73 | 0.133733 |
ORF3a | 131 | W131L | tGg | tTg | 154 | 154 | B.1 | 0.001411 |
ORF3a | 131 | W131L | tGg | tTg | 123 | 123 | AY.103 | 0.000764 |
ORF3a | 131 | W131L | tGg | tTg | 110 | 110 | AY.47 | 0.003422 |
ORF3a | 131 | W131L | tGg | tTg | 83 | 83 | P.1.14 | 0.003967 |
ORF3a | 131 | W131L | tGg | tTg | 74 | 74 | B.1.2 | 0.000652 |
ORF3a | 131 | W131L | tGg | tTg | 61 | 61 | AY.25 | 0.000367 |
ORF3a | 131 | W131L | tGg | tTg | 61 | 61 | AY.44 | 0.000371 |
ORF3a | 131 | W131L | tGg | tTg | 57 | 57 | AY.39 | 0.001409 |
ORF3a | 131 | W131L | tGg | tTg | 56 | 56 | Q.1 | 0.007074 |
ORF3a | 131 | W131L | tGg | tTg | 45 | 45 | AY.102 | 0.001193 |
ORF3a | 131 | W131L | tGg | tTg | 40 | 40 | AY.4.4 | 0.016367 |
ORF3a | 131 | W131L | tGg | tTg | 37 | 37 | AY.3.1 | 0.003155 |
ORF3a | 131 | W131L | tGg | tTg | 31 | 31 | AY.20 | 0.001205 |
ORF3a | 131 | W131L | tGg | tTg | 30 | 30 | AY.100 | 0.00138 |
ORF3a | 131 | W131L | tGg | tTg | 30 | 30 | P.1 | 0.000473 |
ORF3a | 131 | W131L | tGg | tTg | 27 | 27 | AY.91 | 0.019722 |
ORF3a | 131 | W131L | tGg | tTg | 26 | 26 | Q.7 | 0.028889 |
ORF3a | 131 | W131L | tGg | tTg | 25 | 25 | B.1.1 | 0.000454 |
ORF3a | 131 | W131L | tGg | tTg | 24 | 24 | B.1.637 | 0.001754 |
ORF3a | 131 | W131L | tGg | tTg | 23 | 23 | AY.3 | 0.000229 |
ORF3a | 131 | W131L | tGg | tTg | 22 | 22 | AY.33 | 0.001469 |
ORF3a | 131 | W131L | tGg | tTg | 21 | 21 | B.1.258 | 0.001397 |
ORF3a | 131 | W131L | tGg | tTg | 20 | 20 | B.1.310 | 0.952381 |
ORF3a | 131 | W131L | tGg | tTg | 20 | 20 | B.1.597 | 0.092593 |
ORF3a | 131 | W131L | tGg | tTg | 18 | 18 | AY.120 | 0.000669 |
ORF3a | 131 | W131L | tGg | tTg | 18 | 18 | B.1.160 | 0.000561 |
ORF3a | 131 | W131L | tGg | tTg | 15 | 15 | AY.54 | 0.00143 |
ORF3a | 131 | W131L | tGg | tTg | 14 | 14 | AY.29 | 0.000221 |
ORF3a | 131 | W131L | tGg | tTg | 14 | 14 | AY.56 | 0.022472 |
ORF3a | 131 | W131L | tGg | tTg | 14 | 14 | AY.98.1 | 0.000678 |
ORF3a | 131 | W131L | tGg | tTg | 12 | 12 | AY.60 | 0.011257 |
ORF3a | 131 | W131L | tGg | tTg | 11 | 11 | B.1.177 | 0.000145 |
ORF3a | 131 | W131L | tGg | tTg | 10 | 10 | AY.68 | 0.002737 |
ORF3a | 131 | W131L | tGg | tTg | 10 | 10 | B.1.526 | 0.000235 |
ORF3a | 131 | W131L | tGg | tTg | 9 | 9 | AY.118 | 0.000564 |
ORF3a | 131 | W131L | tGg | tTg | 8 | 8 | AY.114 | 0.001849 |
ORF3a | 131 | W131L | tGg | tTg | 8 | 8 | AY.75 | 0.000448 |
ORF3a | 131 | W131L | tGg | tTg | 8 | 8 | B.1.636 | 0.053691 |
ORF3a | 131 | W131L | tGg | tTg | 8 | 8 | C.37 | 0.000929 |
ORF3a | 131 | W131L | tGg | tTg | 7 | 7 | AY.116 | 0.002007 |
ORF3a | 131 | W131L | tGg | tTg | 7 | 7 | AY.46.4 | 0.001152 |
ORF3a | 131 | W131L | tGg | tTg | 7 | 7 | AY.5 | 0.000145 |
ORF3a | 131 | W131L | tGg | tTg | 7 | 7 | AY.6 | 0.000288 |
ORF3a | 131 | W131L | tGg | tTg | 7 | 7 | B.1.234 | 0.000924 |
ORF3a | 131 | W131L | tGg | tTg | 6 | 6 | AY.30 | 0.002374 |
ORF3a | 131 | W131L | tGg | tTg | 6 | 6 | B.1.36.22 | 0.007246 |
ORF3a | 131 | W131L | tGg | tTg | 6 | 6 | B.1.565 | 0.004862 |
ORF3a | 131 | W131L | tGg | tTg | 6 | 6 | B.1.617.1 | 0.000774 |
ORF3a | 131 | W131L | tGg | tTg | 5 | 5 | AY.46 | 0.00052 |
ORF3a | 131 | W131L | tGg | tTg | 5 | 5 | AY.81 | 0.00996 |
ORF3a | 131 | W131L | tGg | tTg | 5 | 5 | AY.9.1 | 0.000419 |
ORF3a | 131 | W131L | tGg | tTg | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.115 | 0.020833 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.23 | 0.000279 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.4.2 | 0.000087 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.4.5 | 0.00043 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.5.3 | 0.00135 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.61 | 0.000419 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.70 | 0.000834 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.84 | 0.00175 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.9 | 0.00027 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | AY.93 | 0.001092 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | B.1.1.214 | 0.000222 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | B.1.160.7 | 0.008316 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | B.1.214.2 | 0.002398 |
ORF3a | 131 | W131L | tGg | tTg | 4 | 4 | B.1.596 | 0.000349 |
ORF3a | 131 | W131L | tGg | tTg | 3 | 3 | AY.26 | 0.000085 |
ORF3a | 131 | W131L | tGg | tTg | 3 | 3 | AY.59 | 0.001589 |
ORF3a | 131 | W131L | tGg | tTg | 3 | 3 | AY.67 | 0.001393 |
ORF3a | 131 | W131L | tGg | tTg | 3 | 3 | B.1.1.519 | 0.000119 |
ORF3a | 131 | W131L | tGg | tTg | 3 | 3 | B.1.258.17 | 0.000312 |
ORF3a | 131 | W131L | tGg | tTg | 3 | 3 | B.1.36 | 0.000438 |
ORF3a | 131 | W131L | tGg | tTg | 3 | 3 | C.36.3 | 0.001702 |
ORF3a | 131 | W131L | tGg | tTg | 3 | 3 | Q.8 | 0.000495 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | A.2.5 | 0.000998 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.10 | 0.00106 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.106 | 0.00067 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.107 | 0.000932 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.110 | 0.000225 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.111 | 0.000366 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.117 | 0.000169 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.34.1 | 0.00102 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.39.1 | 0.000079 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.45 | 0.000243 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.53 | 0.000575 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.65 | 0.001066 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.66 | 0.002139 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.1.29 | 0.020619 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.177.60 | 0.000437 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.177.73 | 0.001133 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.177.86 | 0.000367 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.206 | 0.001631 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.210 | 0.004264 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.241 | 0.001623 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.351.2 | 0.000605 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.438.4 | 0.042553 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.524 | 0.002813 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | B.3 | 0.001661 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | D.2 | 0.00015 |
ORF3a | 131 | W131L | tGg | tTg | 2 | 2 | P.2 | 0.000373 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | A | 0.000387 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AT.1 | 0.005128 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.46.1 | 0.001027 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.80 | 0.001129 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | AZ.2 | 0.000821 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B | 0.000128 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.1.135 | 0.004695 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.1.466 | 0.008696 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.1.52 | 0.012195 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.160.22 | 0.006757 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.177.56 | 0.000668 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.279 | 0.000514 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.346 | 0.001311 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.397 | 0.004854 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.546 | 0.003704 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.554 | 0.004405 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 131 | W131L | tGg | tTg | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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