CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 130 | C130C | syn | tgC | tgT | 7247 | 7247 | 1 | 25780-25782 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 130 | C130C | tgC | tgT | 7247 | 7247 | All | 0.001386 |
ORF3a | 130 | C130C | tgC | tgT | 2667 | 2667 | AY.68 | 0.730085 |
ORF3a | 130 | C130C | tgC | tgT | 1340 | 1340 | B.1.1.7 | 0.0012 |
ORF3a | 130 | C130C | tgC | tgT | 682 | 682 | AY.4 | 0.001061 |
ORF3a | 130 | C130C | tgC | tgT | 367 | 367 | B.1.1.519 | 0.014574 |
ORF3a | 130 | C130C | tgC | tgT | 209 | 209 | B.1.617.2 | 0.000787 |
ORF3a | 130 | C130C | tgC | tgT | 197 | 197 | AY.43 | 0.000873 |
ORF3a | 130 | C130C | tgC | tgT | 161 | 161 | AY.25 | 0.000968 |
ORF3a | 130 | C130C | tgC | tgT | 108 | 108 | B.1.526 | 0.002538 |
ORF3a | 130 | C130C | tgC | tgT | 101 | 101 | B.1 | 0.000925 |
ORF3a | 130 | C130C | tgC | tgT | 86 | 86 | AY.103 | 0.000534 |
ORF3a | 130 | C130C | tgC | tgT | 86 | 86 | B.1.2 | 0.000757 |
ORF3a | 130 | C130C | tgC | tgT | 72 | 72 | AY.20 | 0.002798 |
ORF3a | 130 | C130C | tgC | tgT | 69 | 69 | B.1.404 | 0.089844 |
ORF3a | 130 | C130C | tgC | tgT | 68 | 68 | B.1.177 | 0.000895 |
ORF3a | 130 | C130C | tgC | tgT | 63 | 63 | AY.3 | 0.000627 |
ORF3a | 130 | C130C | tgC | tgT | 58 | 58 | B.1.1 | 0.001052 |
ORF3a | 130 | C130C | tgC | tgT | 53 | 53 | B.1.429 | 0.001247 |
ORF3a | 130 | C130C | tgC | tgT | 46 | 46 | AY.44 | 0.00028 |
ORF3a | 130 | C130C | tgC | tgT | 34 | 34 | B.1.380 | 0.225166 |
ORF3a | 130 | C130C | tgC | tgT | 31 | 31 | B.1.243 | 0.002157 |
ORF3a | 130 | C130C | tgC | tgT | 29 | 29 | R.1 | 0.00261 |
ORF3a | 130 | C130C | tgC | tgT | 27 | 27 | B.1.1.214 | 0.001497 |
ORF3a | 130 | C130C | tgC | tgT | 27 | 27 | B.1.517 | 0.011529 |
ORF3a | 130 | C130C | tgC | tgT | 26 | 26 | AY.39 | 0.000642 |
ORF3a | 130 | C130C | tgC | tgT | 24 | 24 | P.1 | 0.000378 |
ORF3a | 130 | C130C | tgC | tgT | 21 | 21 | AY.5 | 0.000434 |
ORF3a | 130 | C130C | tgC | tgT | 18 | 18 | B.1.177.12 | 0.002731 |
ORF3a | 130 | C130C | tgC | tgT | 16 | 16 | B.1.438.1 | 0.001716 |
ORF3a | 130 | C130C | tgC | tgT | 15 | 15 | AY.23 | 0.001046 |
ORF3a | 130 | C130C | tgC | tgT | 15 | 15 | B.1.351 | 0.000446 |
ORF3a | 130 | C130C | tgC | tgT | 15 | 15 | B.1.427 | 0.000757 |
ORF3a | 130 | C130C | tgC | tgT | 14 | 14 | AY.9.2 | 0.000514 |
ORF3a | 130 | C130C | tgC | tgT | 14 | 14 | B.1.1.50 | 0.009504 |
ORF3a | 130 | C130C | tgC | tgT | 14 | 14 | B.1.258 | 0.000932 |
ORF3a | 130 | C130C | tgC | tgT | 14 | 14 | B.1.400 | 0.006006 |
ORF3a | 130 | C130C | tgC | tgT | 12 | 12 | AY.102 | 0.000318 |
ORF3a | 130 | C130C | tgC | tgT | 12 | 12 | B.1.497 | 0.003777 |
ORF3a | 130 | C130C | tgC | tgT | 11 | 11 | B.1.596 | 0.000959 |
ORF3a | 130 | C130C | tgC | tgT | 10 | 10 | AY.33 | 0.000668 |
ORF3a | 130 | C130C | tgC | tgT | 10 | 10 | AY.47 | 0.000311 |
ORF3a | 130 | C130C | tgC | tgT | 10 | 10 | AY.59 | 0.005297 |
ORF3a | 130 | C130C | tgC | tgT | 10 | 10 | B.1.1.189 | 0.015129 |
ORF3a | 130 | C130C | tgC | tgT | 9 | 9 | AY.100 | 0.000414 |
ORF3a | 130 | C130C | tgC | tgT | 9 | 9 | AY.4.2 | 0.000195 |
ORF3a | 130 | C130C | tgC | tgT | 9 | 9 | AY.75 | 0.000504 |
ORF3a | 130 | C130C | tgC | tgT | 9 | 9 | B.1.1.161 | 0.031802 |
ORF3a | 130 | C130C | tgC | tgT | 9 | 9 | B.1.1.369 | 0.004016 |
ORF3a | 130 | C130C | tgC | tgT | 9 | 9 | B.1.160 | 0.000281 |
ORF3a | 130 | C130C | tgC | tgT | 9 | 9 | B.1.177.57 | 0.002529 |
ORF3a | 130 | C130C | tgC | tgT | 8 | 8 | AY.26 | 0.000226 |
ORF3a | 130 | C130C | tgC | tgT | 8 | 8 | AY.34 | 0.000776 |
ORF3a | 130 | C130C | tgC | tgT | 8 | 8 | B.1.177.9 | 0.010652 |
ORF3a | 130 | C130C | tgC | tgT | 8 | 8 | B.1.369 | 0.002282 |
ORF3a | 130 | C130C | tgC | tgT | 7 | 7 | AY.42 | 0.000282 |
ORF3a | 130 | C130C | tgC | tgT | 7 | 7 | B.1.1.302 | 0.014523 |
ORF3a | 130 | C130C | tgC | tgT | 7 | 7 | B.1.1.316 | 0.006475 |
ORF3a | 130 | C130C | tgC | tgT | 7 | 7 | B.1.621 | 0.00062 |
ORF3a | 130 | C130C | tgC | tgT | 7 | 7 | C.37 | 0.000812 |
ORF3a | 130 | C130C | tgC | tgT | 7 | 7 | P.2 | 0.001306 |
ORF3a | 130 | C130C | tgC | tgT | 6 | 6 | AY.119 | 0.000212 |
ORF3a | 130 | C130C | tgC | tgT | 6 | 6 | AY.120 | 0.000223 |
ORF3a | 130 | C130C | tgC | tgT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF3a | 130 | C130C | tgC | tgT | 5 | 5 | B.1.1.434 | 0.001743 |
ORF3a | 130 | C130C | tgC | tgT | 5 | 5 | B.1.36 | 0.00073 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | AY.111 | 0.000733 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | AY.117 | 0.000338 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | AY.29 | 0.000063 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | AY.45 | 0.000487 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | AY.46.6 | 0.000289 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | AY.73 | 0.002661 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | B.1.1.37 | 0.000771 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | B.1.1.428 | 0.037736 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | B.1.1.63 | 0.001543 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | B.1.163 | 0.097561 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | B.1.177.45 | 0.001525 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 130 | C130C | tgC | tgT | 4 | 4 | B.1.628 | 0.001409 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | AE.8 | 0.001467 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | AY.12 | 0.000948 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | AY.6 | 0.000123 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | AY.99.2 | 0.000276 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | B.1.1.10 | 0.003344 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | B.1.1.413 | 0.02069 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | B.1.160.32 | 0.012876 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | B.1.372 | 0.032967 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | B.1.595.1 | 0.017544 |
ORF3a | 130 | C130C | tgC | tgT | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.13 | 0.000322 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.41 | 0.000588 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.46.3 | 0.001867 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.53 | 0.000575 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.54 | 0.000191 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.7 | 0.000392 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.92 | 0.000575 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B | 0.000256 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.177.15 | 0.001262 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.177.72 | 0.00678 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.177.83 | 0.002963 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.234 | 0.000264 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.564 | 0.000852 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | D.2 | 0.00015 |
ORF3a | 130 | C130C | tgC | tgT | 2 | 2 | P.1.14 | 0.000096 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | A.2 | 0.000662 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AE.1 | 0.011364 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.115 | 0.005208 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.120.2 | 0.001285 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.22 | 0.002092 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.51 | 0.000909 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.76 | 0.004831 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.123 | 0.017857 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.285 | 0.006536 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.396 | 0.045455 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.142 | 0.002899 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.213 | 0.014925 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.357 | 0.009524 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.381 | 0.007812 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.398 | 0.002976 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.432 | 0.011236 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.530 | 0.007143 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.536 | 0.02381 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.566 | 0.019231 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.597 | 0.00463 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.619 | 0.000871 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.620 | 0.000946 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.1.93 | 0.000934 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | B.3 | 0.000831 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 130 | C130C | tgC | tgT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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