CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 130

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a130C130CsyntgCtgT72477247125780-25782
ORF3a130C130SnonsynTgcAgc2171450.66820325780-25782
ORF3a130C130SnonsyntGctCc217720.33179725780-25782
ORF3a130C130deldelTGC---8787125780-25782
ORF3a130C130FnonsyntGctTc7171125780-25782
ORF3a130C130GnonsynTgcGgc5959125780-25782
ORF3a130C130del2deltGCt--19170.89473725780-25782
ORF3a130C130del2delTGc--c1920.10526325780-25782
ORF3a130C130XnonsyntgCtgA1080.825780-25782
ORF3a130C130XnonsyntGCtAA1020.225780-25782
ORF3a130C130RnonsynTgcCgc77125780-25782
ORF3a130C130YnonsyntGctAc77125780-25782
ORF3a130C130WnonsyntgCtgG33125780-25782
ORF3a130C130del1delTgc-gc320.66666725780-25782
ORF3a130C130del1deltgCtg-310.33333325780-25782
ORF3a130C130VnonsynTGcGTc11125780-25782

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a130C130CtgCtgT72477247All0.001386
ORF3a130C130CtgCtgT26672667AY.680.730085
ORF3a130C130CtgCtgT13401340B.1.1.70.0012
ORF3a130C130CtgCtgT682682AY.40.001061
ORF3a130C130CtgCtgT367367B.1.1.5190.014574
ORF3a130C130STgcAgc145217All0.000028
ORF3a130C130StGctCc72217All0.000014
ORF3a130C130CtgCtgT209209B.1.617.20.000787
ORF3a130C130CtgCtgT197197AY.430.000873
ORF3a130C130CtgCtgT161161AY.250.000968
ORF3a130C130CtgCtgT108108B.1.5260.002538
ORF3a130C130CtgCtgT101101B.10.000925
ORF3a130C130delTGC---8787All0.000017
ORF3a130C130CtgCtgT8686AY.1030.000534
ORF3a130C130CtgCtgT8686B.1.20.000757
ORF3a130C130CtgCtgT7272AY.200.002798
ORF3a130C130FtGctTc7171All0.000014
ORF3a130C130STgcAgc3669B.1.1.70.000032
ORF3a130C130StGctCc3369B.1.1.70.00003
ORF3a130C130CtgCtgT6969B.1.4040.089844
ORF3a130C130CtgCtgT6868B.1.1770.000895
ORF3a130C130CtgCtgT6363AY.30.000627
ORF3a130C130GTgcGgc5959All0.000011
ORF3a130C130CtgCtgT5858B.1.10.001052
ORF3a130C130CtgCtgT5353B.1.4290.001247
ORF3a130C130GTgcGgc5151B.1.1.70.000046
ORF3a130C130STgcAgc4646AY.250.000277
ORF3a130C130CtgCtgT4646AY.440.00028
ORF3a130C130CtgCtgT3434B.1.3800.225166
ORF3a130C130CtgCtgT3131B.1.2430.002157
ORF3a130C130CtgCtgT2929R.10.00261
ORF3a130C130CtgCtgT2727B.1.1.2140.001497
ORF3a130C130CtgCtgT2727B.1.5170.011529
ORF3a130C130CtgCtgT2626AY.390.000642
ORF3a130C130CtgCtgT2424P.10.000378
ORF3a130C130FtGctTc2222B.1.1.70.00002
ORF3a130C130CtgCtgT2121AY.50.000434
ORF3a130C130del2tGCt--1719All0.000003
ORF3a130C130del2TGc--c219All0
ORF3a130C130CtgCtgT1818B.1.177.120.002731
ORF3a130C130delTGC---1616B.1.1.70.000014
ORF3a130C130CtgCtgT1616B.1.438.10.001716
ORF3a130C130CtgCtgT1515AY.230.001046
ORF3a130C130CtgCtgT1515B.1.3510.000446
ORF3a130C130CtgCtgT1515B.1.4270.000757
ORF3a130C130CtgCtgT1414AY.9.20.000514
ORF3a130C130CtgCtgT1414B.1.1.500.009504
ORF3a130C130CtgCtgT1414B.1.2580.000932
ORF3a130C130CtgCtgT1414B.1.4000.006006
ORF3a130C130STgcAgc1313AY.4.20.000282
ORF3a130C130CtgCtgT1212AY.1020.000318
ORF3a130C130StGctCc1212B.1.1.2140.000665
ORF3a130C130CtgCtgT1212B.1.4970.003777
ORF3a130C130CtgCtgT1111B.1.5960.000959
ORF3a130C130XtgCtgA810All0.000002
ORF3a130C130XtGCtAA210All0
ORF3a130C130CtgCtgT1010AY.330.000668
ORF3a130C130CtgCtgT1010AY.470.000311
ORF3a130C130CtgCtgT1010AY.590.005297
ORF3a130C130CtgCtgT1010B.1.1.1890.015129
ORF3a130C130CtgCtgT99AY.1000.000414
ORF3a130C130CtgCtgT99AY.4.20.000195
ORF3a130C130CtgCtgT99AY.750.000504
ORF3a130C130delTGC---99B.10.000082
ORF3a130C130FtGctTc99B.10.000082
ORF3a130C130CtgCtgT99B.1.1.1610.031802
ORF3a130C130CtgCtgT99B.1.1.3690.004016
ORF3a130C130CtgCtgT99B.1.1600.000281
ORF3a130C130CtgCtgT99B.1.177.570.002529
ORF3a130C130StGctCc89B.1.360.001167
ORF3a130C130STgcAgc19B.1.360.000146
ORF3a130C130STgcAgc79B.1.617.20.000026
ORF3a130C130StGctCc29B.1.617.20.000008
ORF3a130C130CtgCtgT88AY.260.000226
ORF3a130C130CtgCtgT88AY.340.000776
ORF3a130C130STgcAgc88B.1.1.5190.000318
ORF3a130C130CtgCtgT88B.1.177.90.010652
ORF3a130C130CtgCtgT88B.1.3690.002282
ORF3a130C130YtGctAc77All0.000001
ORF3a130C130RTgcCgc77All0.000001
ORF3a130C130delTGC---77AY.40.000011
ORF3a130C130CtgCtgT77AY.420.000282
ORF3a130C130CtgCtgT77B.1.1.3020.014523
ORF3a130C130CtgCtgT77B.1.1.3160.006475
ORF3a130C130CtgCtgT77B.1.6210.00062
ORF3a130C130CtgCtgT77C.370.000812
ORF3a130C130CtgCtgT77P.20.001306
ORF3a130C130CtgCtgT66AY.1190.000212
ORF3a130C130CtgCtgT66AY.1200.000223
ORF3a130C130FtGctTc55AY.40.000008
ORF3a130C130CtgCtgT55B.1.1.250.002843
ORF3a130C130CtgCtgT55B.1.1.4340.001743
ORF3a130C130CtgCtgT55B.1.360.00073
ORF3a130C130CtgCtgT44AY.1110.000733
ORF3a130C130CtgCtgT44AY.1170.000338
ORF3a130C130CtgCtgT44AY.290.000063
ORF3a130C130delTGC---44AY.430.000018
ORF3a130C130STgcAgc44AY.430.000018
ORF3a130C130STgcAgc44AY.440.000024
ORF3a130C130CtgCtgT44AY.450.000487
ORF3a130C130CtgCtgT44AY.46.60.000289
ORF3a130C130CtgCtgT44AY.730.002661
ORF3a130C130CtgCtgT44B.1.1.370.000771
ORF3a130C130CtgCtgT44B.1.1.4280.037736
ORF3a130C130CtgCtgT44B.1.1.630.001543
ORF3a130C130CtgCtgT44B.1.1630.097561
ORF3a130C130CtgCtgT44B.1.177.450.001525
ORF3a130C130STgcAgc44B.1.1990.016529
ORF3a130C130STgcAgc44B.1.36.290.002069
ORF3a130C130StGctCc44B.1.3610.005155
ORF3a130C130CtgCtgT44B.1.5250.000453
ORF3a130C130CtgCtgT44B.1.6280.001409
ORF3a130C130CtgCtgT33AE.80.001467
ORF3a130C130WtgCtgG33All0.000001
ORF3a130C130del1Tgc-gc23All0
ORF3a130C130del1tgCtg-13All0
ORF3a130C130CtgCtgT33AY.120.000948
ORF3a130C130FtGctTc33AY.270.000194
ORF3a130C130CtgCtgT33AY.39.10.000119
ORF3a130C130STgcAgc23AY.40.000003
ORF3a130C130StGctCc13AY.40.000002
ORF3a130C130CtgCtgT33AY.4.50.000322
ORF3a130C130CtgCtgT33AY.60.000123
ORF3a130C130CtgCtgT33AY.99.20.000276
ORF3a130C130FtGctTc33B.1.10.000054
ORF3a130C130CtgCtgT33B.1.1.100.003344
ORF3a130C130CtgCtgT33B.1.1.4130.02069
ORF3a130C130RTgcCgc33B.1.1.70.000003
ORF3a130C130del2tGCt--23B.1.1.70.000002
ORF3a130C130del2TGc--c13B.1.1.70.000001
ORF3a130C130CtgCtgT33B.1.160.320.012876
ORF3a130C130delTGC---33B.1.1770.00004
ORF3a130C130CtgCtgT33B.1.3110.000824
ORF3a130C130CtgCtgT33B.1.3720.032967
ORF3a130C130STgcAgc33B.1.5260.000071
ORF3a130C130CtgCtgT33B.1.595.10.017544
ORF3a130C130FtGctTc33B.1.617.20.000011
ORF3a130C130delTGC---33B.1.617.20.000011
ORF3a130C130del2tGCt--33B.1.617.20.000011
ORF3a130C130CtgCtgT33B.1.6370.000219
ORF3a130C130delTGC---33P.10.000047
ORF3a130C130XtgCtgA220.111111
ORF3a130C130delTGC---220.111111
ORF3a130C130CtgCtgT22AY.1160.000574
ORF3a130C130del2tGCt--22AY.1190.000071
ORF3a130C130CtgCtgT22AY.130.000322
ORF3a130C130del2tGCt--22AY.250.000012
ORF3a130C130CtgCtgT22AY.3.10.000171
ORF3a130C130XtgCtgA22AY.40.000003
ORF3a130C130CtgCtgT22AY.4.2.10.000298
ORF3a130C130delTGC---22AY.4.50.000215
ORF3a130C130CtgCtgT22AY.410.000588
ORF3a130C130CtgCtgT22AY.46.30.001867
ORF3a130C130StGctCc12AY.50.000021
ORF3a130C130STgcAgc12AY.50.000021
ORF3a130C130CtgCtgT22AY.530.000575
ORF3a130C130CtgCtgT22AY.540.000191
ORF3a130C130CtgCtgT22AY.70.000392
ORF3a130C130CtgCtgT22AY.9.10.000167
ORF3a130C130CtgCtgT22AY.920.000575
ORF3a130C130CtgCtgT22AY.98.10.000097
ORF3a130C130CtgCtgT22B0.000256
ORF3a130C130XtgCtgA22B.10.000018
ORF3a130C130CtgCtgT22B.1.1.2200.003717
ORF3a130C130CtgCtgT22B.1.1.2220.000408
ORF3a130C130CtgCtgT22B.1.1.330.000842
ORF3a130C130CtgCtgT22B.1.1.4090.005666
ORF3a130C130WtgCtgG22B.1.1.70.000002
ORF3a130C130XtGCtAA22B.1.140.035088
ORF3a130C130STgcAgc22B.1.1770.000026
ORF3a130C130CtgCtgT22B.1.177.150.001262
ORF3a130C130CtgCtgT22B.1.177.720.00678
ORF3a130C130CtgCtgT22B.1.177.830.002963
ORF3a130C130CtgCtgT22B.1.2210.000142
ORF3a130C130CtgCtgT22B.1.2340.000264
ORF3a130C130delTGC---22B.1.5250.000226
ORF3a130C130CtgCtgT22B.1.5640.000852
ORF3a130C130delTGC---22B.1.6210.000177
ORF3a130C130CtgCtgT22B.1.621.10.001012
ORF3a130C130CtgCtgT22D.20.00015
ORF3a130C130STgcAgc22P.10.000032
ORF3a130C130CtgCtgT22P.1.140.000096
ORF3a130C130delTGC---22P.1.150.000465
ORF3a130C130delTGC---11A0.000387
ORF3a130C130CtgCtgT11A.20.000662
ORF3a130C130CtgCtgT11A.2.50.000499
ORF3a130C130CtgCtgT11AD.20.000219
ORF3a130C130CtgCtgT11AE.10.011364
ORF3a130C130VTGcGTc11All0
ORF3a130C130FtGctTc11AU.30.00211
ORF3a130C130delTGC---11AV.10.005051
ORF3a130C130FtGctTc11AY.1020.000027
ORF3a130C130VTGcGTc11AY.1030.000006
ORF3a130C130del2tGCt--11AY.1030.000006
ORF3a130C130delTGC---11AY.1030.000006
ORF3a130C130GTgcGgc11AY.1070.000466
ORF3a130C130CtgCtgT11AY.1100.000113
ORF3a130C130delTGC---11AY.1110.000183
ORF3a130C130CtgCtgT11AY.1130.000142
ORF3a130C130GTgcGgc11AY.1140.000231
ORF3a130C130CtgCtgT11AY.1150.005208
ORF3a130C130CtgCtgT11AY.1180.000063
ORF3a130C130delTGC---11AY.1200.000037
ORF3a130C130CtgCtgT11AY.120.20.001285
ORF3a130C130CtgCtgT11AY.1210.000135
ORF3a130C130CtgCtgT11AY.220.002092
ORF3a130C130CtgCtgT11AY.23.10.000417
ORF3a130C130delTGC---11AY.250.000006
ORF3a130C130CtgCtgT11AY.270.000065
ORF3a130C130del2tGCt--11AY.290.000016
ORF3a130C130StGctCc11AY.290.000016
ORF3a130C130FtGctTc11AY.290.000016
ORF3a130C130delTGC---11AY.290.000016
ORF3a130C130STgcAgc11AY.30.00001
ORF3a130C130delTGC---11AY.30.00001
ORF3a130C130FtGctTc11AY.30.00001
ORF3a130C130GTgcGgc11AY.3.10.000085
ORF3a130C130CtgCtgT11AY.320.000532
ORF3a130C130StGctCc11AY.330.000067
ORF3a130C130FtGctTc11AY.340.000097
ORF3a130C130StGctCc11AY.390.000025
ORF3a130C130del2tGCt--11AY.390.000025
ORF3a130C130delTGC---11AY.390.000025
ORF3a130C130RTgcCgc11AY.40.000002
ORF3a130C130del2tGCt--11AY.40.000002
ORF3a130C130GTgcGgc11AY.40.000002
ORF3a130C130StGctCc11AY.4.2.10.000149
ORF3a130C130CtgCtgT11AY.4.40.000409
ORF3a130C130CtgCtgT11AY.400.000964
ORF3a130C130del2tGCt--11AY.430.000004
ORF3a130C130FtGctTc11AY.430.000004
ORF3a130C130YtGctAc11AY.430.000004
ORF3a130C130FtGctTc11AY.440.000006
ORF3a130C130delTGC---11AY.440.000006
ORF3a130C130YtGctAc11AY.440.000006
ORF3a130C130del2tGCt--11AY.440.000006
ORF3a130C130delTGC---11AY.450.000122
ORF3a130C130CtgCtgT11AY.46.40.000165
ORF3a130C130YtGctAc11AY.470.000031
ORF3a130C130FtGctTc11AY.470.000031
ORF3a130C130STgcAgc11AY.470.000031
ORF3a130C130CtgCtgT11AY.480.000465
ORF3a130C130delTGC---11AY.5.30.000337
ORF3a130C130CtgCtgT11AY.5.40.000277
ORF3a130C130CtgCtgT11AY.510.000909
ORF3a130C130CtgCtgT11AY.580.000907
ORF3a130C130delTGC---11AY.60.000041
ORF3a130C130GTgcGgc11AY.610.000105
ORF3a130C130delTGC---11AY.680.000274
ORF3a130C130delTGC---11AY.70.000196
ORF3a130C130CtgCtgT11AY.75.10.00018
ORF3a130C130CtgCtgT11AY.760.004831
ORF3a130C130FtGctTc11AY.770.001127
ORF3a130C130FtGctTc11AY.850.000427
ORF3a130C130CtgCtgT11AY.90.000068
ORF3a130C130CtgCtgT11AY.930.000273
ORF3a130C130CtgCtgT11AZ.10.000867
ORF3a130C130delTGC---11B0.000128
ORF3a130C130RTgcCgc11B.10.000009
ORF3a130C130WtgCtgG11B.1.10.000018
ORF3a130C130STgcAgc11B.1.10.000018
ORF3a130C130RTgcCgc11B.1.10.000018
ORF3a130C130CtgCtgT11B.1.1.10.000327
ORF3a130C130FtGctTc11B.1.1.10.000327
ORF3a130C130CtgCtgT11B.1.1.1230.017857
ORF3a130C130delTGC---11B.1.1.2140.000055
ORF3a130C130CtgCtgT11B.1.1.2410.00207
ORF3a130C130StGctCc11B.1.1.2530.002506
ORF3a130C130CtgCtgT11B.1.1.2630.001558
ORF3a130C130CtgCtgT11B.1.1.2850.006536
ORF3a130C130CtgCtgT11B.1.1.2940.001266
ORF3a130C130CtgCtgT11B.1.1.2980.000862
ORF3a130C130CtgCtgT11B.1.1.3010.001179
ORF3a130C130delTGC---11B.1.1.3150.008475
ORF3a130C130GTgcGgc11B.1.1.3180.000302
ORF3a130C130CtgCtgT11B.1.1.3180.000302
ORF3a130C130CtgCtgT11B.1.1.3680.003086
ORF3a130C130CtgCtgT11B.1.1.3960.045455
ORF3a130C130delTGC---11B.1.1.4090.002833
ORF3a130C130delTGC---11B.1.1.4200.001006
ORF3a130C130CtgCtgT11B.1.1.440.00241
ORF3a130C130FtGctTc11B.1.1.4400.011765
ORF3a130C130YtGctAc11B.1.1.70.000001
ORF3a130C130del1tgCtg-11B.1.1.70.000001
ORF3a130C130CtgCtgT11B.1.1.700.000341
ORF3a130C130CtgCtgT11B.1.1.830.00271
ORF3a130C130CtgCtgT11B.1.1110.001175
ORF3a130C130delTGC---11B.1.1400.018868
ORF3a130C130CtgCtgT11B.1.1420.002899
ORF3a130C130delTGC---11B.1.160.230.004831
ORF3a130C130FtGctTc11B.1.160.80.001289
ORF3a130C130GTgcGgc11B.1.1700.00431
ORF3a130C130del2tGCt--11B.1.1770.000013
ORF3a130C130FtGctTc11B.1.1770.000013
ORF3a130C130CtgCtgT11B.1.177.110.001698
ORF3a130C130delTGC---11B.1.177.120.000152
ORF3a130C130YtGctAc11B.1.177.160.000664
ORF3a130C130CtgCtgT11B.1.177.580.001332
ORF3a130C130CtgCtgT11B.1.177.600.000218
ORF3a130C130delTGC---11B.1.177.620.001192
ORF3a130C130CtgCtgT11B.1.177.770.000726
ORF3a130C130CtgCtgT11B.1.177.810.000189
ORF3a130C130CtgCtgT11B.1.177.820.000477
ORF3a130C130CtgCtgT11B.1.177.860.000183
ORF3a130C130del2TGc--c11B.1.20.000009
ORF3a130C130STgcAgc11B.1.20.000009
ORF3a130C130CtgCtgT11B.1.2100.002132
ORF3a130C130CtgCtgT11B.1.2130.014925
ORF3a130C130delTGC---11B.1.2410.000812
ORF3a130C130CtgCtgT11B.1.258.110.000396
ORF3a130C130del1Tgc-gc11B.1.258.160.001637
ORF3a130C130CtgCtgT11B.1.258.170.000104
ORF3a130C130CtgCtgT11B.1.3490.000715
ORF3a130C130STgcAgc11B.1.3510.00003
ORF3a130C130delTGC---11B.1.3510.00003
ORF3a130C130CtgCtgT11B.1.3570.009524
ORF3a130C130CtgCtgT11B.1.36.210.00216
ORF3a130C130CtgCtgT11B.1.36.290.000517
ORF3a130C130FtGctTc11B.1.3670.000792
ORF3a130C130del2tGCt--11B.1.3690.000285
ORF3a130C130CtgCtgT11B.1.3810.007812
ORF3a130C130CtgCtgT11B.1.3960.000706
ORF3a130C130CtgCtgT11B.1.3980.002976
ORF3a130C130CtgCtgT11B.1.4090.000781
ORF3a130C130delTGC---11B.1.416.10.001563
ORF3a130C130FtGctTc11B.1.4230.010204
ORF3a130C130StGctCc11B.1.4290.000024
ORF3a130C130CtgCtgT11B.1.4320.011236
ORF3a130C130CtgCtgT11B.1.466.20.000391
ORF3a130C130FtGctTc11B.1.4700.001404
ORF3a130C130CtgCtgT11B.1.4700.001404
ORF3a130C130CtgCtgT11B.1.5300.007143
ORF3a130C130CtgCtgT11B.1.5360.02381
ORF3a130C130CtgCtgT11B.1.5380.008065
ORF3a130C130CtgCtgT11B.1.5600.00463
ORF3a130C130CtgCtgT11B.1.5660.019231
ORF3a130C130StGctCc11B.1.5780.017857
ORF3a130C130FtGctTc11B.1.5950.000261
ORF3a130C130CtgCtgT11B.1.5950.000261
ORF3a130C130delTGC---11B.1.5960.000087
ORF3a130C130del1Tgc-gc11B.1.5960.000087
ORF3a130C130CtgCtgT11B.1.5970.00463
ORF3a130C130delTGC---11B.1.617.10.000129
ORF3a130C130CtgCtgT11B.1.6190.000871
ORF3a130C130CtgCtgT11B.1.6200.000946
ORF3a130C130STgcAgc11B.1.6210.000089
ORF3a130C130YtGctAc11B.1.6370.000073
ORF3a130C130delTGC---11B.1.6380.052632
ORF3a130C130CtgCtgT11B.1.930.000934
ORF3a130C130STgcAgc11B.290.003509
ORF3a130C130CtgCtgT11B.30.000831
ORF3a130C130STgcAgc11B.550.00295
ORF3a130C130StGctCc11B.60.00091
ORF3a130C130FtGctTc11D.20.000075
ORF3a130C130RTgcCgc11D.20.000075
ORF3a130C130YtGctAc11P.10.000016
ORF3a130C130XtgCtgA11P.10.000016
ORF3a130C130FtGctTc11P.10.000016
ORF3a130C130GTgcGgc11P.10.000016
ORF3a130C130StGctCc11P.1.10.000318
ORF3a130C130XtgCtgA11P.1.10.000318
ORF3a130C130FtGctTc11P.1.140.000048
ORF3a130C130FtGctTc11P.1.160.000374
ORF3a130C130CtgCtgT11P.1.170.000162
ORF3a130C130FtGctTc11P.1.70.000319
ORF3a130C130FtGctTc11P.20.000187
ORF3a130C130FtGctTc11Q.10.000126
ORF3a130C130CtgCtgT11Q.10.000126
ORF3a130C130CtgCtgT11Q.30.000145
ORF3a130C130delTGC---11Q.40.000455
ORF3a130C130StGctCc11Q.80.000165
ORF3a130C130StGctCc11R.10.00009
ORF3a130C130FtGctTc11R.10.00009
ORF3a130C130delTGC---11U.30.003861