CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 129

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a129L129FnonsynCttTtt33393339125777-25779
ORF3a129L129LsynctTctC3913420.8746825777-25779
ORF3a129L129LsynctTctA391270.069053725777-25779
ORF3a129L129LsynctTctG391220.05626625777-25779
ORF3a129L129InonsynCttAtt387387125777-25779
ORF3a129L129deldelCTT---8383125777-25779
ORF3a129L129PnonsyncTtcCt1616125777-25779
ORF3a129L129del1delcTtc-t870.87525777-25779
ORF3a129L129VnonsynCttGtt870.87525777-25779
ORF3a129L129VnonsynCtTGtG810.12525777-25779
ORF3a129L129del1delCtt-tt810.12525777-25779
ORF3a129L129RnonsyncTtcGt420.525777-25779
ORF3a129L129RnonsyncTTcGC420.525777-25779
ORF3a129L129del2delcTTc--11125777-25779

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a129L129FCttTtt33393339All0.000639
ORF3a129L129FCttTtt972972AY.1200.036138
ORF3a129L129LctTctC342391All0.000065
ORF3a129L129LctTctA27391All0.000005
ORF3a129L129LctTctG22391All0.000004
ORF3a129L129ICttAtt387387All0.000074
ORF3a129L129FCttTtt357357B.1.1.1700.445137
ORF3a129L129FCttTtt297297AY.40.000462
ORF3a129L129ICttAtt253253B.1.20.002228
ORF3a129L129FCttTtt250250AY.440.001522
ORF3a129L129FCttTtt198198B.1.1.70.000177
ORF3a129L129FCttTtt172172B.1.3060.982857
ORF3a129L129FCttTtt153153B.10.001401
ORF3a129L129FCttTtt141141B.1.617.20.000531
ORF3a129L129LctTctC8087B.1.1.70.000072
ORF3a129L129LctTctG687B.1.1.70.000005
ORF3a129L129LctTctA187B.1.1.70.000001
ORF3a129L129delCTT---8383All0.000016
ORF3a129L129LctTctC7981B.1.617.20.000297
ORF3a129L129LctTctG281B.1.617.20.000008
ORF3a129L129FCttTtt7373B.1.5750.022148
ORF3a129L129FCttTtt6565AY.50.001342
ORF3a129L129FCttTtt4141B.1.1600.001279
ORF3a129L129FCttTtt3838B.1.10.000689
ORF3a129L129FCttTtt3434AY.30.000338
ORF3a129L129LctTctC3030AY.540.00286
ORF3a129L129FCttTtt2929AY.250.000174
ORF3a129L129ICttAtt2929AY.440.000177
ORF3a129L129LctTctA2121AY.60.000864
ORF3a129L129FCttTtt2121B.1.20.000185
ORF3a129L129FCttTtt2020B.1.2320.010747
ORF3a129L129FCttTtt1919AY.90.001284
ORF3a129L129ICttAtt1919B.1.617.20.000072
ORF3a129L129FCttTtt1919P.1.140.000908
ORF3a129L129ICttAtt1818AY.200.0007
ORF3a129L129delCTT---1818B.1.1.70.000016
ORF3a129L129PcTtcCt1616All0.000003
ORF3a129L129LctTctC1516B.1.20.000132
ORF3a129L129LctTctG116B.1.20.000009
ORF3a129L129FCttTtt1515AY.290.000237
ORF3a129L129FCttTtt1515D.20.001126
ORF3a129L129FCttTtt1414AY.4.20.000304
ORF3a129L129FCttTtt1414B.1.6230.007511
ORF3a129L129FCttTtt1414P.10.000221
ORF3a129L129ICttAtt1313B.10.000119
ORF3a129L129LctTctC1313B.1.1.3060.005699
ORF3a129L129LctTctC1212B.1.1.4320.01519
ORF3a129L129FCttTtt1111AY.1030.000068
ORF3a129L129LctTctC811AY.40.000012
ORF3a129L129LctTctG311AY.40.000005
ORF3a129L129LctTctC1111B.1.1.4200.011066
ORF3a129L129LctTctC1111B.1.1.5190.000437
ORF3a129L129FCttTtt1111B.1.1770.000145
ORF3a129L129FCttTtt1010AY.1000.00046
ORF3a129L129ICttAtt1010AY.30.000099
ORF3a129L129FCttTtt1010AY.390.000247
ORF3a129L129LctTctC1010AY.930.002731
ORF3a129L129LctTctC79B.10.000064
ORF3a129L129LctTctG19B.10.000009
ORF3a129L129LctTctA19B.10.000009
ORF3a129L129FCttTtt99P.20.00168
ORF3a129L129FCttTtt88A0.003096
ORF3a129L129del1cTtc-t78All0.000001
ORF3a129L129VCttGtt78All0.000001
ORF3a129L129VCtTGtG18All0
ORF3a129L129del1Ctt-tt18All0
ORF3a129L129FCttTtt88AY.430.000035
ORF3a129L129delCTT---88B.10.000073
ORF3a129L129ICttAtt88B.1.4290.000188
ORF3a129L129FCttTtt88B.1.4290.000188
ORF3a129L129FCttTtt88B.1.6090.003835
ORF3a129L129FCttTtt88C.370.000929
ORF3a129L129FCttTtt77AY.1020.000186
ORF3a129L129LctTctC77AY.290.00011
ORF3a129L129LctTctC77AY.470.000218
ORF3a129L129FCttTtt77B.1.1.3700.088608
ORF3a129L129FCttTtt77B.1.4270.000353
ORF3a129L129FCttTtt77B.1.5170.002989
ORF3a129L129ICttAtt77B.1.5960.00061
ORF3a129L129FCttTtt77R.10.00063
ORF3a129L129LctTctC46AY.1030.000025
ORF3a129L129LctTctA26AY.1030.000012
ORF3a129L129FCttTtt66AY.330.000401
ORF3a129L129FCttTtt66AY.360.000889
ORF3a129L129FCttTtt66AY.46.60.000433
ORF3a129L129FCttTtt66AZ.20.004926
ORF3a129L129FCttTtt66B.1.1.3180.001811
ORF3a129L129FCttTtt66B.1.2210.000426
ORF3a129L129LctTctC66P.10.000095
ORF3a129L129FCttTtt66P.1.40.005859
ORF3a129L129FCttTtt55AY.120.20.006427
ORF3a129L129LctTctC55AY.430.000022
ORF3a129L129FCttTtt55B.1.1.2160.004452
ORF3a129L129FCttTtt55B.1.1.3890.030303
ORF3a129L129ICttAtt55B.1.1.70.000004
ORF3a129L129FCttTtt55B.1.5250.000566
ORF3a129L129LctTctC44A0.001548
ORF3a129L129RcTTcGC24All0
ORF3a129L129RcTtcGt24All0
ORF3a129L129LctTctC34AY.390.000074
ORF3a129L129LctTctG14AY.390.000025
ORF3a129L129ICttAtt44AY.40.000006
ORF3a129L129delCTT---44AY.40.000006
ORF3a129L129delCTT---44AY.430.000018
ORF3a129L129FCttTtt44AY.590.002119
ORF3a129L129FCttTtt44AY.610.000419
ORF3a129L129FCttTtt44B.1.177.160.002658
ORF3a129L129FCttTtt44B.1.6210.000354
ORF3a129L129FCttTtt33AY.1050.001929
ORF3a129L129FCttTtt33AY.230.000209
ORF3a129L129FCttTtt33AY.39.10.000119
ORF3a129L129FCttTtt33AY.470.000093
ORF3a129L129FCttTtt33AY.540.000286
ORF3a129L129FCttTtt33AY.60.000123
ORF3a129L129FCttTtt33AY.7.10.000338
ORF3a129L129FCttTtt33AY.740.000347
ORF3a129L129LctTctC33AY.900.002053
ORF3a129L129PcTtcCt33B.10.000027
ORF3a129L129LctTctC33B.1.10.000054
ORF3a129L129FCttTtt33B.1.1.1890.004539
ORF3a129L129FCttTtt33B.1.1.4090.008499
ORF3a129L129delCTT---33B.1.1770.00004
ORF3a129L129FCttTtt33B.1.2430.000209
ORF3a129L129FCttTtt33B.1.5760.00272
ORF3a129L129FCttTtt33B.1.5960.000261
ORF3a129L129delCTT---33B.1.617.20.000011
ORF3a129L129delCTT---33P.10.000047
ORF3a129L129FCttTtt33P.1.150.000697
ORF3a129L129FCttTtt33Q.10.000379
ORF3a129L129delCTT---220.111111
ORF3a129L129LctTctC22AY.1020.000053
ORF3a129L129ICttAtt22AY.1020.000053
ORF3a129L129FCttTtt22AY.116.10.000623
ORF3a129L129LctTctC22AY.140.000176
ORF3a129L129FCttTtt22AY.260.000057
ORF3a129L129FCttTtt22AY.3.10.000171
ORF3a129L129FCttTtt22AY.300.000791
ORF3a129L129PcTtcCt22AY.40.000003
ORF3a129L129delCTT---22AY.4.50.000215
ORF3a129L129LctTctC22AY.46.20.001271
ORF3a129L129LctTctG22AY.50.000041
ORF3a129L129FCttTtt22AY.75.10.000361
ORF3a129L129FCttTtt22AY.840.000875
ORF3a129L129FCttTtt22AY.980.000158
ORF3a129L129FCttTtt22B0.000256
ORF3a129L129FCttTtt22B.1.1.250.001137
ORF3a129L129FCttTtt22B.1.1.2980.001724
ORF3a129L129LctTctG22B.1.1.3690.000892
ORF3a129L129FCttTtt22B.1.1.460.008734
ORF3a129L129FCttTtt22B.1.1.500.001358
ORF3a129L129del1cTtc-t22B.1.1.70.000002
ORF3a129L129PcTtcCt22B.1.1.70.000002
ORF3a129L129VCtTGtG12B.1.1.70.000001
ORF3a129L129VCttGtt12B.1.1.70.000001
ORF3a129L129LctTctG22B.1.140.035088
ORF3a129L129LctTctC22B.1.177.650.001331
ORF3a129L129FCttTtt22B.1.2400.000431
ORF3a129L129FCttTtt22B.1.3240.00321
ORF3a129L129FCttTtt22B.1.3510.000059
ORF3a129L129FCttTtt22B.1.3560.003454
ORF3a129L129LctTctC12B.1.360.000146
ORF3a129L129LctTctA12B.1.360.000146
ORF3a129L129FCttTtt22B.1.36.290.001035
ORF3a129L129ICttAtt22B.1.3960.001411
ORF3a129L129FCttTtt22B.1.4700.002809
ORF3a129L129delCTT---22B.1.5250.000226
ORF3a129L129FCttTtt22B.1.5610.000794
ORF3a129L129delCTT---22B.1.5960.000174
ORF3a129L129LctTctC22B.1.5960.000174
ORF3a129L129FCttTtt22B.1.6200.001892
ORF3a129L129delCTT---22B.1.6210.000177
ORF3a129L129delCTT---22P.1.150.000465
ORF3a129L129delCTT---11A0.000387
ORF3a129L129PcTtcCt11A.20.000662
ORF3a129L129FCttTtt11A.2.20.001689
ORF3a129L129PcTtcCt11A.2.50.000499
ORF3a129L129FCttTtt11A.250.018182
ORF3a129L129FCttTtt11AA.10.007246
ORF3a129L129FCttTtt11AD.20.000219
ORF3a129L129del2cTTc--11All0
ORF3a129L129delCTT---11AV.10.005051
ORF3a129L129LctTctC11AY.1000.000046
ORF3a129L129FCttTtt11AY.1010.00049
ORF3a129L129delCTT---11AY.1030.000006
ORF3a129L129ICttAtt11AY.1030.000006
ORF3a129L129FCttTtt11AY.1060.000335
ORF3a129L129delCTT---11AY.1110.000183
ORF3a129L129ICttAtt11AY.1110.000183
ORF3a129L129FCttTtt11AY.1160.000287
ORF3a129L129LctTctC11AY.1190.000035
ORF3a129L129FCttTtt11AY.120.000316
ORF3a129L129delCTT---11AY.1200.000037
ORF3a129L129FCttTtt11AY.1210.000135
ORF3a129L129FCttTtt11AY.170.008197
ORF3a129L129FCttTtt11AY.20.000356
ORF3a129L129delCTT---11AY.250.000006
ORF3a129L129del1cTtc-t11AY.250.000006
ORF3a129L129ICttAtt11AY.260.000028
ORF3a129L129delCTT---11AY.290.000016
ORF3a129L129LctTctG11AY.330.000067
ORF3a129L129VCttGtt11AY.340.000097
ORF3a129L129FCttTtt11AY.380.000499
ORF3a129L129PcTtcCt11AY.390.000025
ORF3a129L129delCTT---11AY.390.000025
ORF3a129L129PcTtcCt11AY.4.20.000022
ORF3a129L129FCttTtt11AY.4.40.000409
ORF3a129L129FCttTtt11AY.4.50.000107
ORF3a129L129LctTctG11AY.4.50.000107
ORF3a129L129FCttTtt11AY.420.00004
ORF3a129L129ICttAtt11AY.420.00004
ORF3a129L129RcTtcGt11AY.430.000004
ORF3a129L129VCttGtt11AY.430.000004
ORF3a129L129VCttGtt11AY.440.000006
ORF3a129L129LctTctC11AY.440.000006
ORF3a129L129delCTT---11AY.440.000006
ORF3a129L129FCttTtt11AY.450.000122
ORF3a129L129FCttTtt11AY.460.000104
ORF3a129L129ICttAtt11AY.460.000104
ORF3a129L129FCttTtt11AY.46.40.000165
ORF3a129L129PcTtcCt11AY.470.000031
ORF3a129L129del1cTtc-t11AY.470.000031
ORF3a129L129FCttTtt11AY.490.003195
ORF3a129L129FCttTtt11AY.5.20.002463
ORF3a129L129delCTT---11AY.5.30.000337
ORF3a129L129LctTctC11AY.590.00053
ORF3a129L129delCTT---11AY.60.000041
ORF3a129L129LctTctC11AY.620.000436
ORF3a129L129FCttTtt11AY.650.000533
ORF3a129L129delCTT---11AY.680.000274
ORF3a129L129FCttTtt11AY.70.000196
ORF3a129L129delCTT---11AY.70.000196
ORF3a129L129ICttAtt11AY.750.000056
ORF3a129L129LctTctC11AY.75.10.00018
ORF3a129L129FCttTtt11AY.770.001127
ORF3a129L129LctTctC11AY.9.10.000084
ORF3a129L129FCttTtt11AY.9.20.000037
ORF3a129L129FCttTtt11AY.900.000684
ORF3a129L129FCttTtt11AY.920.000287
ORF3a129L129FCttTtt11AY.960.002075
ORF3a129L129ICttAtt11AY.980.000079
ORF3a129L129FCttTtt11AY.99.20.000092
ORF3a129L129delCTT---11B0.000128
ORF3a129L129del1cTtc-t11B.10.000009
ORF3a129L129RcTTcGC11B.10.000009
ORF3a129L129RcTTcGC11B.1.10.000018
ORF3a129L129PcTtcCt11B.1.10.000018
ORF3a129L129FCttTtt11B.1.1.1640.005155
ORF3a129L129VCttGtt11B.1.1.1700.001247
ORF3a129L129delCTT---11B.1.1.2140.000055
ORF3a129L129FCttTtt11B.1.1.2220.000204
ORF3a129L129LctTctC11B.1.1.2300.009174
ORF3a129L129FCttTtt11B.1.1.280.000311
ORF3a129L129ICttAtt11B.1.1.3070.002532
ORF3a129L129delCTT---11B.1.1.3150.008475
ORF3a129L129FCttTtt11B.1.1.3170.000412
ORF3a129L129FCttTtt11B.1.1.3260.001761
ORF3a129L129LctTctC11B.1.1.3290.003846
ORF3a129L129FCttTtt11B.1.1.330.000421
ORF3a129L129FCttTtt11B.1.1.3690.000446
ORF3a129L129FCttTtt11B.1.1.370.000193
ORF3a129L129FCttTtt11B.1.1.3770.001381
ORF3a129L129FCttTtt11B.1.1.390.00051
ORF3a129L129FCttTtt11B.1.1.4020.011111
ORF3a129L129delCTT---11B.1.1.4090.002833
ORF3a129L129delCTT---11B.1.1.4200.001006
ORF3a129L129VCttGtt11B.1.1.4320.001266
ORF3a129L129FCttTtt11B.1.1.4340.000349
ORF3a129L129FCttTtt11B.1.1.620.027027
ORF3a129L129FCttTtt11B.1.1100.004525
ORF3a129L129ICttAtt11B.1.130.002375
ORF3a129L129delCTT---11B.1.1400.018868
ORF3a129L129delCTT---11B.1.160.230.004831
ORF3a129L129ICttAtt11B.1.160.300.002976
ORF3a129L129delCTT---11B.1.177.120.000152
ORF3a129L129FCttTtt11B.1.177.320.00135
ORF3a129L129FCttTtt11B.1.177.440.000519
ORF3a129L129delCTT---11B.1.177.620.001192
ORF3a129L129FCttTtt11B.1.177.730.000566
ORF3a129L129FCttTtt11B.1.177.860.000183
ORF3a129L129PcTtcCt11B.1.20.000009
ORF3a129L129del1cTtc-t11B.1.20.000009
ORF3a129L129del2cTTc--11B.1.20.000009
ORF3a129L129FCttTtt11B.1.2030.0625
ORF3a129L129FCttTtt11B.1.2060.000816
ORF3a129L129FCttTtt11B.1.2220.001692
ORF3a129L129ICttAtt11B.1.2340.000132
ORF3a129L129FCttTtt11B.1.2340.000132
ORF3a129L129FCttTtt11B.1.2390.001221
ORF3a129L129FCttTtt11B.1.2410.000812
ORF3a129L129ICttAtt11B.1.2430.00007
ORF3a129L129FCttTtt11B.1.2580.000067
ORF3a129L129FCttTtt11B.1.258.110.000396
ORF3a129L129delCTT---11B.1.258.160.001637
ORF3a129L129LctTctC11B.1.258.170.000104
ORF3a129L129ICttAtt11B.1.2650.001271
ORF3a129L129FCttTtt11B.1.2820.014925
ORF3a129L129FCttTtt11B.1.3290.000608
ORF3a129L129del1Ctt-tt11B.1.3510.00003
ORF3a129L129FCttTtt11B.1.360.000146
ORF3a129L129FCttTtt11B.1.36.160.001425
ORF3a129L129LctTctC11B.1.36.170.000494
ORF3a129L129FCttTtt11B.1.36.190.009259
ORF3a129L129PcTtcCt11B.1.362.20.004717
ORF3a129L129FCttTtt11B.1.3670.000792
ORF3a129L129FCttTtt11B.1.3900.010638
ORF3a129L129FCttTtt11B.1.3970.004854
ORF3a129L129FCttTtt11B.1.4000.000429
ORF3a129L129delCTT---11B.1.416.10.001563
ORF3a129L129FCttTtt11B.1.4170.028571
ORF3a129L129LctTctA11B.1.4270.00005
ORF3a129L129FCttTtt11B.1.4510.008197
ORF3a129L129FCttTtt11B.1.4530.003236
ORF3a129L129FCttTtt11B.1.4560.003268
ORF3a129L129FCttTtt11B.1.4670.04
ORF3a129L129FCttTtt11B.1.4680.005714
ORF3a129L129FCttTtt11B.1.5270.003704
ORF3a129L129LctTctC11B.1.5380.008065
ORF3a129L129ICttAtt11B.1.5610.000397
ORF3a129L129FCttTtt11B.1.5680.001111
ORF3a129L129RcTtcGt11B.1.5960.000087
ORF3a129L129FCttTtt11B.1.617.10.000129
ORF3a129L129delCTT---11B.1.617.10.000129
ORF3a129L129del1cTtc-t11B.1.617.20.000004
ORF3a129L129VCttGtt11B.1.6190.000871
ORF3a129L129ICttAtt11B.1.6280.000352
ORF3a129L129FCttTtt11B.1.6310.003367
ORF3a129L129delCTT---11B.1.6380.052632
ORF3a129L129FCttTtt11C.160.00106
ORF3a129L129ICttAtt11D.20.000075
ORF3a129L129PcTtcCt11D.20.000075
ORF3a129L129FCttTtt11N.50.001767
ORF3a129L129ICttAtt11P.10.000016
ORF3a129L129FCttTtt11P.1.10.000318
ORF3a129L129LctTctC11P.1.140.000048
ORF3a129L129FCttTtt11P.1.80.004785
ORF3a129L129FCttTtt11Q.40.000455
ORF3a129L129delCTT---11Q.40.000455
ORF3a129L129FCttTtt11Q.80.000165
ORF3a129L129delCTT---11U.30.003861