CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 129 | L129F | nonsyn | Ctt | Ttt | 3339 | 3339 | 1 | 25777-25779 | |
ORF3a | 129 | L129L | syn | ctT | ctC | 391 | 342 | 0.87468 | 25777-25779 | |
ORF3a | 129 | L129L | syn | ctT | ctA | 391 | 27 | 0.0690537 | 25777-25779 | |
ORF3a | 129 | L129L | syn | ctT | ctG | 391 | 22 | 0.056266 | 25777-25779 | |
ORF3a | 129 | L129I | nonsyn | Ctt | Att | 387 | 387 | 1 | 25777-25779 | |
ORF3a | 129 | L129del | del | CTT | --- | 83 | 83 | 1 | 25777-25779 | |
ORF3a | 129 | L129P | nonsyn | cTt | cCt | 16 | 16 | 1 | 25777-25779 | |
ORF3a | 129 | L129del1 | del | cTt | c-t | 8 | 7 | 0.875 | 25777-25779 | |
ORF3a | 129 | L129V | nonsyn | Ctt | Gtt | 8 | 7 | 0.875 | 25777-25779 | |
ORF3a | 129 | L129V | nonsyn | CtT | GtG | 8 | 1 | 0.125 | 25777-25779 | |
ORF3a | 129 | L129del1 | del | Ctt | -tt | 8 | 1 | 0.125 | 25777-25779 | |
ORF3a | 129 | L129R | nonsyn | cTt | cGt | 4 | 2 | 0.5 | 25777-25779 | |
ORF3a | 129 | L129R | nonsyn | cTT | cGC | 4 | 2 | 0.5 | 25777-25779 | |
ORF3a | 129 | L129del2 | del | cTT | c-- | 1 | 1 | 1 | 25777-25779 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 129 | L129F | Ctt | Ttt | 3339 | 3339 | All | 0.000639 |
ORF3a | 129 | L129F | Ctt | Ttt | 972 | 972 | AY.120 | 0.036138 |
ORF3a | 129 | L129L | ctT | ctC | 342 | 391 | All | 0.000065 |
ORF3a | 129 | L129L | ctT | ctA | 27 | 391 | All | 0.000005 |
ORF3a | 129 | L129L | ctT | ctG | 22 | 391 | All | 0.000004 |
ORF3a | 129 | L129I | Ctt | Att | 387 | 387 | All | 0.000074 |
ORF3a | 129 | L129F | Ctt | Ttt | 357 | 357 | B.1.1.170 | 0.445137 |
ORF3a | 129 | L129F | Ctt | Ttt | 297 | 297 | AY.4 | 0.000462 |
ORF3a | 129 | L129I | Ctt | Att | 253 | 253 | B.1.2 | 0.002228 |
ORF3a | 129 | L129F | Ctt | Ttt | 250 | 250 | AY.44 | 0.001522 |
ORF3a | 129 | L129F | Ctt | Ttt | 198 | 198 | B.1.1.7 | 0.000177 |
ORF3a | 129 | L129F | Ctt | Ttt | 172 | 172 | B.1.306 | 0.982857 |
ORF3a | 129 | L129F | Ctt | Ttt | 153 | 153 | B.1 | 0.001401 |
ORF3a | 129 | L129F | Ctt | Ttt | 141 | 141 | B.1.617.2 | 0.000531 |
ORF3a | 129 | L129L | ctT | ctC | 80 | 87 | B.1.1.7 | 0.000072 |
ORF3a | 129 | L129L | ctT | ctG | 6 | 87 | B.1.1.7 | 0.000005 |
ORF3a | 129 | L129L | ctT | ctA | 1 | 87 | B.1.1.7 | 0.000001 |
ORF3a | 129 | L129del | CTT | --- | 83 | 83 | All | 0.000016 |
ORF3a | 129 | L129L | ctT | ctC | 79 | 81 | B.1.617.2 | 0.000297 |
ORF3a | 129 | L129L | ctT | ctG | 2 | 81 | B.1.617.2 | 0.000008 |
ORF3a | 129 | L129F | Ctt | Ttt | 73 | 73 | B.1.575 | 0.022148 |
ORF3a | 129 | L129F | Ctt | Ttt | 65 | 65 | AY.5 | 0.001342 |
ORF3a | 129 | L129F | Ctt | Ttt | 41 | 41 | B.1.160 | 0.001279 |
ORF3a | 129 | L129F | Ctt | Ttt | 38 | 38 | B.1.1 | 0.000689 |
ORF3a | 129 | L129F | Ctt | Ttt | 34 | 34 | AY.3 | 0.000338 |
ORF3a | 129 | L129L | ctT | ctC | 30 | 30 | AY.54 | 0.00286 |
ORF3a | 129 | L129F | Ctt | Ttt | 29 | 29 | AY.25 | 0.000174 |
ORF3a | 129 | L129I | Ctt | Att | 29 | 29 | AY.44 | 0.000177 |
ORF3a | 129 | L129L | ctT | ctA | 21 | 21 | AY.6 | 0.000864 |
ORF3a | 129 | L129F | Ctt | Ttt | 21 | 21 | B.1.2 | 0.000185 |
ORF3a | 129 | L129F | Ctt | Ttt | 20 | 20 | B.1.232 | 0.010747 |
ORF3a | 129 | L129F | Ctt | Ttt | 19 | 19 | AY.9 | 0.001284 |
ORF3a | 129 | L129I | Ctt | Att | 19 | 19 | B.1.617.2 | 0.000072 |
ORF3a | 129 | L129F | Ctt | Ttt | 19 | 19 | P.1.14 | 0.000908 |
ORF3a | 129 | L129I | Ctt | Att | 18 | 18 | AY.20 | 0.0007 |
ORF3a | 129 | L129del | CTT | --- | 18 | 18 | B.1.1.7 | 0.000016 |
ORF3a | 129 | L129P | cTt | cCt | 16 | 16 | All | 0.000003 |
ORF3a | 129 | L129L | ctT | ctC | 15 | 16 | B.1.2 | 0.000132 |
ORF3a | 129 | L129L | ctT | ctG | 1 | 16 | B.1.2 | 0.000009 |
ORF3a | 129 | L129F | Ctt | Ttt | 15 | 15 | AY.29 | 0.000237 |
ORF3a | 129 | L129F | Ctt | Ttt | 15 | 15 | D.2 | 0.001126 |
ORF3a | 129 | L129F | Ctt | Ttt | 14 | 14 | AY.4.2 | 0.000304 |
ORF3a | 129 | L129F | Ctt | Ttt | 14 | 14 | B.1.623 | 0.007511 |
ORF3a | 129 | L129F | Ctt | Ttt | 14 | 14 | P.1 | 0.000221 |
ORF3a | 129 | L129I | Ctt | Att | 13 | 13 | B.1 | 0.000119 |
ORF3a | 129 | L129L | ctT | ctC | 13 | 13 | B.1.1.306 | 0.005699 |
ORF3a | 129 | L129L | ctT | ctC | 12 | 12 | B.1.1.432 | 0.01519 |
ORF3a | 129 | L129F | Ctt | Ttt | 11 | 11 | AY.103 | 0.000068 |
ORF3a | 129 | L129L | ctT | ctC | 8 | 11 | AY.4 | 0.000012 |
ORF3a | 129 | L129L | ctT | ctG | 3 | 11 | AY.4 | 0.000005 |
ORF3a | 129 | L129L | ctT | ctC | 11 | 11 | B.1.1.420 | 0.011066 |
ORF3a | 129 | L129L | ctT | ctC | 11 | 11 | B.1.1.519 | 0.000437 |
ORF3a | 129 | L129F | Ctt | Ttt | 11 | 11 | B.1.177 | 0.000145 |
ORF3a | 129 | L129F | Ctt | Ttt | 10 | 10 | AY.100 | 0.00046 |
ORF3a | 129 | L129I | Ctt | Att | 10 | 10 | AY.3 | 0.000099 |
ORF3a | 129 | L129F | Ctt | Ttt | 10 | 10 | AY.39 | 0.000247 |
ORF3a | 129 | L129L | ctT | ctC | 10 | 10 | AY.93 | 0.002731 |
ORF3a | 129 | L129L | ctT | ctC | 7 | 9 | B.1 | 0.000064 |
ORF3a | 129 | L129L | ctT | ctG | 1 | 9 | B.1 | 0.000009 |
ORF3a | 129 | L129L | ctT | ctA | 1 | 9 | B.1 | 0.000009 |
ORF3a | 129 | L129F | Ctt | Ttt | 9 | 9 | P.2 | 0.00168 |
ORF3a | 129 | L129F | Ctt | Ttt | 8 | 8 | A | 0.003096 |
ORF3a | 129 | L129del1 | cTt | c-t | 7 | 8 | All | 0.000001 |
ORF3a | 129 | L129V | Ctt | Gtt | 7 | 8 | All | 0.000001 |
ORF3a | 129 | L129V | CtT | GtG | 1 | 8 | All | 0 |
ORF3a | 129 | L129del1 | Ctt | -tt | 1 | 8 | All | 0 |
ORF3a | 129 | L129F | Ctt | Ttt | 8 | 8 | AY.43 | 0.000035 |
ORF3a | 129 | L129del | CTT | --- | 8 | 8 | B.1 | 0.000073 |
ORF3a | 129 | L129I | Ctt | Att | 8 | 8 | B.1.429 | 0.000188 |
ORF3a | 129 | L129F | Ctt | Ttt | 8 | 8 | B.1.429 | 0.000188 |
ORF3a | 129 | L129F | Ctt | Ttt | 8 | 8 | B.1.609 | 0.003835 |
ORF3a | 129 | L129F | Ctt | Ttt | 8 | 8 | C.37 | 0.000929 |
ORF3a | 129 | L129F | Ctt | Ttt | 7 | 7 | AY.102 | 0.000186 |
ORF3a | 129 | L129L | ctT | ctC | 7 | 7 | AY.29 | 0.00011 |
ORF3a | 129 | L129L | ctT | ctC | 7 | 7 | AY.47 | 0.000218 |
ORF3a | 129 | L129F | Ctt | Ttt | 7 | 7 | B.1.1.370 | 0.088608 |
ORF3a | 129 | L129F | Ctt | Ttt | 7 | 7 | B.1.427 | 0.000353 |
ORF3a | 129 | L129F | Ctt | Ttt | 7 | 7 | B.1.517 | 0.002989 |
ORF3a | 129 | L129I | Ctt | Att | 7 | 7 | B.1.596 | 0.00061 |
ORF3a | 129 | L129F | Ctt | Ttt | 7 | 7 | R.1 | 0.00063 |
ORF3a | 129 | L129L | ctT | ctC | 4 | 6 | AY.103 | 0.000025 |
ORF3a | 129 | L129L | ctT | ctA | 2 | 6 | AY.103 | 0.000012 |
ORF3a | 129 | L129F | Ctt | Ttt | 6 | 6 | AY.33 | 0.000401 |
ORF3a | 129 | L129F | Ctt | Ttt | 6 | 6 | AY.36 | 0.000889 |
ORF3a | 129 | L129F | Ctt | Ttt | 6 | 6 | AY.46.6 | 0.000433 |
ORF3a | 129 | L129F | Ctt | Ttt | 6 | 6 | AZ.2 | 0.004926 |
ORF3a | 129 | L129F | Ctt | Ttt | 6 | 6 | B.1.1.318 | 0.001811 |
ORF3a | 129 | L129F | Ctt | Ttt | 6 | 6 | B.1.221 | 0.000426 |
ORF3a | 129 | L129L | ctT | ctC | 6 | 6 | P.1 | 0.000095 |
ORF3a | 129 | L129F | Ctt | Ttt | 6 | 6 | P.1.4 | 0.005859 |
ORF3a | 129 | L129F | Ctt | Ttt | 5 | 5 | AY.120.2 | 0.006427 |
ORF3a | 129 | L129L | ctT | ctC | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 129 | L129F | Ctt | Ttt | 5 | 5 | B.1.1.216 | 0.004452 |
ORF3a | 129 | L129F | Ctt | Ttt | 5 | 5 | B.1.1.389 | 0.030303 |
ORF3a | 129 | L129I | Ctt | Att | 5 | 5 | B.1.1.7 | 0.000004 |
ORF3a | 129 | L129F | Ctt | Ttt | 5 | 5 | B.1.525 | 0.000566 |
ORF3a | 129 | L129L | ctT | ctC | 4 | 4 | A | 0.001548 |
ORF3a | 129 | L129R | cTT | cGC | 2 | 4 | All | 0 |
ORF3a | 129 | L129R | cTt | cGt | 2 | 4 | All | 0 |
ORF3a | 129 | L129L | ctT | ctC | 3 | 4 | AY.39 | 0.000074 |
ORF3a | 129 | L129L | ctT | ctG | 1 | 4 | AY.39 | 0.000025 |
ORF3a | 129 | L129I | Ctt | Att | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 129 | L129del | CTT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 129 | L129del | CTT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 129 | L129F | Ctt | Ttt | 4 | 4 | AY.59 | 0.002119 |
ORF3a | 129 | L129F | Ctt | Ttt | 4 | 4 | AY.61 | 0.000419 |
ORF3a | 129 | L129F | Ctt | Ttt | 4 | 4 | B.1.177.16 | 0.002658 |
ORF3a | 129 | L129F | Ctt | Ttt | 4 | 4 | B.1.621 | 0.000354 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | AY.105 | 0.001929 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | AY.23 | 0.000209 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | AY.54 | 0.000286 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | AY.6 | 0.000123 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | AY.7.1 | 0.000338 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | AY.74 | 0.000347 |
ORF3a | 129 | L129L | ctT | ctC | 3 | 3 | AY.90 | 0.002053 |
ORF3a | 129 | L129P | cTt | cCt | 3 | 3 | B.1 | 0.000027 |
ORF3a | 129 | L129L | ctT | ctC | 3 | 3 | B.1.1 | 0.000054 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | B.1.1.189 | 0.004539 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | B.1.1.409 | 0.008499 |
ORF3a | 129 | L129del | CTT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | B.1.243 | 0.000209 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | B.1.576 | 0.00272 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | B.1.596 | 0.000261 |
ORF3a | 129 | L129del | CTT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 129 | L129del | CTT | --- | 3 | 3 | P.1 | 0.000047 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | P.1.15 | 0.000697 |
ORF3a | 129 | L129F | Ctt | Ttt | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 129 | L129del | CTT | --- | 2 | 2 | 0.111111 | |
ORF3a | 129 | L129L | ctT | ctC | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 129 | L129I | Ctt | Att | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | AY.116.1 | 0.000623 |
ORF3a | 129 | L129L | ctT | ctC | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | AY.30 | 0.000791 |
ORF3a | 129 | L129P | cTt | cCt | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 129 | L129del | CTT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 129 | L129L | ctT | ctC | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 129 | L129L | ctT | ctG | 2 | 2 | AY.5 | 0.000041 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | AY.84 | 0.000875 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B | 0.000256 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.1.298 | 0.001724 |
ORF3a | 129 | L129L | ctT | ctG | 2 | 2 | B.1.1.369 | 0.000892 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.1.46 | 0.008734 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 129 | L129del1 | cTt | c-t | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 129 | L129P | cTt | cCt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF3a | 129 | L129V | CtT | GtG | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 129 | L129V | Ctt | Gtt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 129 | L129L | ctT | ctG | 2 | 2 | B.1.14 | 0.035088 |
ORF3a | 129 | L129L | ctT | ctC | 2 | 2 | B.1.177.65 | 0.001331 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.240 | 0.000431 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.324 | 0.00321 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.356 | 0.003454 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 2 | B.1.36 | 0.000146 |
ORF3a | 129 | L129L | ctT | ctA | 1 | 2 | B.1.36 | 0.000146 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF3a | 129 | L129I | Ctt | Att | 2 | 2 | B.1.396 | 0.001411 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.470 | 0.002809 |
ORF3a | 129 | L129del | CTT | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.561 | 0.000794 |
ORF3a | 129 | L129del | CTT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 129 | L129L | ctT | ctC | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 129 | L129F | Ctt | Ttt | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 129 | L129del | CTT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 129 | L129del | CTT | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | A | 0.000387 |
ORF3a | 129 | L129P | cTt | cCt | 1 | 1 | A.2 | 0.000662 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | A.2.2 | 0.001689 |
ORF3a | 129 | L129P | cTt | cCt | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | A.25 | 0.018182 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AA.1 | 0.007246 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 129 | L129del2 | cTT | c-- | 1 | 1 | All | 0 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.17 | 0.008197 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.2 | 0.000356 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 129 | L129del1 | cTt | c-t | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 129 | L129L | ctT | ctG | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 129 | L129V | Ctt | Gtt | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 129 | L129P | cTt | cCt | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 129 | L129P | cTt | cCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 129 | L129L | ctT | ctG | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 129 | L129R | cTt | cGt | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 129 | L129V | Ctt | Gtt | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 129 | L129V | Ctt | Gtt | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 129 | L129P | cTt | cCt | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 129 | L129del1 | cTt | c-t | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.5.2 | 0.002463 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.65 | 0.000533 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.77 | 0.001127 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B | 0.000128 |
ORF3a | 129 | L129del1 | cTt | c-t | 1 | 1 | B.1 | 0.000009 |
ORF3a | 129 | L129R | cTT | cGC | 1 | 1 | B.1 | 0.000009 |
ORF3a | 129 | L129R | cTT | cGC | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 129 | L129P | cTt | cCt | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF3a | 129 | L129V | Ctt | Gtt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | B.1.1.230 | 0.009174 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | B.1.1.307 | 0.002532 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | B.1.1.329 | 0.003846 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.377 | 0.001381 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.402 | 0.011111 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 129 | L129V | Ctt | Gtt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.1.62 | 0.027027 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.110 | 0.004525 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | B.1.13 | 0.002375 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | B.1.160.30 | 0.002976 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 129 | L129P | cTt | cCt | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 129 | L129del1 | cTt | c-t | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 129 | L129del2 | cTT | c-- | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.203 | 0.0625 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.222 | 0.001692 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | B.1.265 | 0.001271 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.282 | 0.014925 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.329 | 0.000608 |
ORF3a | 129 | L129del1 | Ctt | -tt | 1 | 1 | B.1.351 | 0.00003 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | B.1.36.17 | 0.000494 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.36.19 | 0.009259 |
ORF3a | 129 | L129P | cTt | cCt | 1 | 1 | B.1.362.2 | 0.004717 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.390 | 0.010638 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.397 | 0.004854 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.417 | 0.028571 |
ORF3a | 129 | L129L | ctT | ctA | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.451 | 0.008197 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.453 | 0.003236 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.467 | 0.04 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.527 | 0.003704 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 129 | L129R | cTt | cGt | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 129 | L129del1 | cTt | c-t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 129 | L129V | Ctt | Gtt | 1 | 1 | B.1.619 | 0.000871 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | C.16 | 0.00106 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | D.2 | 0.000075 |
ORF3a | 129 | L129P | cTt | cCt | 1 | 1 | D.2 | 0.000075 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | N.5 | 0.001767 |
ORF3a | 129 | L129I | Ctt | Att | 1 | 1 | P.1 | 0.000016 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 129 | L129L | ctT | ctC | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | P.1.8 | 0.004785 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 129 | L129F | Ctt | Ttt | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 129 | L129del | CTT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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