CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 119

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a119N119HnonsynAacCac102610250.99902525747-25749
ORF3a119N119HnonsynAaCCaT102610.00097465925747-25749
ORF3a119N119NsynaaCaaT366366125747-25749
ORF3a119N119YnonsynAacTac2582570.99612425747-25749
ORF3a119N119YnonsynAaCTaT25810.0038759725747-25749
ORF3a119N119DnonsynAacGac1331320.99248125747-25749
ORF3a119N119DnonsynAaCGaT13310.007518825747-25749
ORF3a119N119deldelAAC---9696125747-25749
ORF3a119N119SnonsynaAcaGc88860.97727325747-25749
ORF3a119N119SnonsynAAcTCc8810.011363625747-25749
ORF3a119N119SnonsynAACTCT8810.011363625747-25749
ORF3a119N119KnonsynaaCaaA44400.90909125747-25749
ORF3a119N119KnonsynaaCaaG4440.090909125747-25749
ORF3a119N119InonsynaAcaTc16140.87525747-25749
ORF3a119N119InonsynaACaTT1610.062525747-25749
ORF3a119N119InonsynaACaTA1610.062525747-25749
ORF3a119N119TnonsynaAcaCc980.88888925747-25749
ORF3a119N119TnonsynaACaCT910.11111125747-25749
ORF3a119N119FnonsynAACTTT210.525747-25749
ORF3a119N119FnonsynAAcTTc210.525747-25749
ORF3a119N119LnonsynAACCTT210.525747-25749
ORF3a119N119LnonsynAAcCTc210.525747-25749
ORF3a119N119PnonsynAACCCT210.525747-25749
ORF3a119N119PnonsynAAcCCc210.525747-25749
ORF3a119N119del2delAAc--c11125747-25749
ORF3a119N119RnonsynaACaGA11125747-25749

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a119N119HAacCac10251026All0.000196
ORF3a119N119HAaCCaT11026All0
ORF3a119N119HAacCac918918B.1.1.70.000822
ORF3a119N119NaaCaaT366366All0.00007
ORF3a119N119YAacTac257258All0.000049
ORF3a119N119YAaCTaT1258All0
ORF3a119N119YAacTac174174AY.330.011619
ORF3a119N119NaaCaaT158158AY.40.000246
ORF3a119N119DAacGac132133All0.000025
ORF3a119N119DAaCGaT1133All0
ORF3a119N119delAAC---9696All0.000018
ORF3a119N119SaAcaGc8688All0.000016
ORF3a119N119SAAcTCc188All0
ORF3a119N119SAACTCT188All0
ORF3a119N119HAacCac7474B.1.4050.91358
ORF3a119N119NaaCaaT4747B.1.1.70.000042
ORF3a119N119KaaCaaA4044All0.000008
ORF3a119N119KaaCaaG444All0.000001
ORF3a119N119DAacGac4040B.1.1.70.000036
ORF3a119N119SaAcaGc2828AY.1130.003987
ORF3a119N119YAacTac2727AY.4.20.000586
ORF3a119N119DAacGac2525B.1.20.00022
ORF3a119N119DAacGac2323B.1.1.270.129944
ORF3a119N119delAAC---1919B.1.1.70.000017
ORF3a119N119SaAcaGc1717AY.30.000169
ORF3a119N119HAacCac1717B.1.10.000308
ORF3a119N119NaaCaaT1717B.1.20.00015
ORF3a119N119IaAcaTc1416All0.000003
ORF3a119N119IaACaTA116All0
ORF3a119N119IaACaTT116All0
ORF3a119N119NaaCaaT1515AY.30.000149
ORF3a119N119DAacGac1515B.10.000137
ORF3a119N119NaaCaaT1313AY.39.10.000515
ORF3a119N119NaaCaaT1313B.10.000119
ORF3a119N119KaaCaaA1212B.1.1.70.000011
ORF3a119N119NaaCaaT1212B.1.617.20.000045
ORF3a119N119NaaCaaT1111AY.440.000067
ORF3a119N119NaaCaaT1111B.1.5960.000959
ORF3a119N119KaaCaaA1010AY.46.60.000722
ORF3a119N119TaAcaCc89All0.000002
ORF3a119N119TaACaCT19All0
ORF3a119N119delAAC---88B.10.000073
ORF3a119N119YAacTac77AY.39.10.000277
ORF3a119N119delAAC---77AY.40.000011
ORF3a119N119YAacTac77B.1.1.70.000006
ORF3a119N119IaAcaTc77B.1.3800.046358
ORF3a119N119NaaCaaT66AY.1030.000037
ORF3a119N119delAAC---66AY.430.000027
ORF3a119N119NaaCaaT66AY.50.000124
ORF3a119N119SaAcaGc66B.1.1.280.001867
ORF3a119N119SaAcaGc66B.1.1.70.000005
ORF3a119N119delAAC---66B.1.1770.000079
ORF3a119N119YAacTac66B.1.177.210.000459
ORF3a119N119NaaCaaT66C.370.000696
ORF3a119N119NaaCaaT55AY.430.000022
ORF3a119N119YAacTac55B.1.617.20.000019
ORF3a119N119HAacCac44B.10.000037
ORF3a119N119TaAcaCc44B.1.1.70.000004
ORF3a119N119delAAC---44B.1.5250.000453
ORF3a119N119delAAC---44B.1.617.20.000015
ORF3a119N119NaaCaaT44P.10.000063
ORF3a119N119delAAC---33AY.250.000018
ORF3a119N119DAacGac33AY.40.000005
ORF3a119N119KaaCaaA33AY.690.00056
ORF3a119N119SaAcaGc33B.1.10.000054
ORF3a119N119NaaCaaT33B.1.1.3360.05
ORF3a119N119NaaCaaT33B.1.177.860.00055
ORF3a119N119NaaCaaT33B.1.3510.000089
ORF3a119N119DAacGac33B.1.617.20.000011
ORF3a119N119NaaCaaT33L.30.010638
ORF3a119N119delAAC---33P.10.000047
ORF3a119N119DAacGac33P.1.140.000143
ORF3a119N119delAAC---220.111111
ORF3a119N119PAACCCT120.055556
ORF3a119N119IaACaTT120.055556
ORF3a119N119TaAcaCc120.055556
ORF3a119N119YAacTac120.055556
ORF3a119N119HAacCac120.055556
ORF3a119N119LAAcCTc120.055556
ORF3a119N119FAACTTT120.055556
ORF3a119N119FAAcTTc120.055556
ORF3a119N119SAACTCT120.055556
ORF3a119N119SAAcTCc120.055556
ORF3a119N119TaACaCT120.055556
ORF3a119N119PAAcCCc120.055556
ORF3a119N119YAaCTaT120.055556
ORF3a119N119IaAcaTc120.055556
ORF3a119N119LAACCTT120.055556
ORF3a119N119HAaCCaT120.055556
ORF3a119N119PAAcCCc12All0
ORF3a119N119FAACTTT12All0
ORF3a119N119FAAcTTc12All0
ORF3a119N119LAACCTT12All0
ORF3a119N119LAAcCTc12All0
ORF3a119N119PAACCCT12All0
ORF3a119N119SaAcaGc22AY.1030.000012
ORF3a119N119NaaCaaT22AY.116.10.000623
ORF3a119N119YAacTac22AY.1170.000169
ORF3a119N119YAacTac22AY.160.000759
ORF3a119N119YAacTac22AY.250.000012
ORF3a119N119YAacTac22AY.30.00002
ORF3a119N119NaaCaaT22AY.330.000134
ORF3a119N119SaAcaGc22AY.40.000003
ORF3a119N119NaaCaaT22AY.4.20.000043
ORF3a119N119DAacGac22AY.430.000009
ORF3a119N119DAacGac22AY.440.000012
ORF3a119N119YAacTac22AY.440.000012
ORF3a119N119SaAcaGc22AY.440.000012
ORF3a119N119SaAcaGc22B.10.000018
ORF3a119N119DAacGac22B.1.10.000036
ORF3a119N119NaaCaaT22B.1.10.000036
ORF3a119N119IaACaTA12B.1.10.000018
ORF3a119N119IaAcaTc12B.1.10.000018
ORF3a119N119YAacTac22B.1.1.250.001137
ORF3a119N119SaAcaGc22B.1.20.000018
ORF3a119N119HAacCac22B.1.214.10.04
ORF3a119N119NaaCaaT22B.1.3670.001585
ORF3a119N119HAacCac22B.1.617.20.000008
ORF3a119N119delAAC---22B.1.6210.000177
ORF3a119N119YAacTac22P.10.000032
ORF3a119N119delAAC---22P.1.150.000465
ORF3a119N119NaaCaaT110.055556
ORF3a119N119delAAC---11A0.000387
ORF3a119N119SaAcaGc11A.2.5.10.004808
ORF3a119N119YAacTac11A.23.10.000704
ORF3a119N119delAAC---11AD.20.000219
ORF3a119N119del2AAc--c11All0
ORF3a119N119RaACaGA11All0
ORF3a119N119delAAC---11AV.10.005051
ORF3a119N119delAAC---11AY.1000.000046
ORF3a119N119IaAcaTc11AY.1020.000027
ORF3a119N119SaAcaGc11AY.1020.000027
ORF3a119N119YAacTac11AY.1020.000027
ORF3a119N119KaaCaaA11AY.1030.000006
ORF3a119N119KaaCaaA11AY.1040.001984
ORF3a119N119NaaCaaT11AY.1080.001103
ORF3a119N119delAAC---11AY.1110.000183
ORF3a119N119IaAcaTc11AY.1110.000183
ORF3a119N119YAacTac11AY.1160.000287
ORF3a119N119NaaCaaT11AY.120.000316
ORF3a119N119TaAcaCc11AY.1200.000037
ORF3a119N119delAAC---11AY.1200.000037
ORF3a119N119YAacTac11AY.140.000088
ORF3a119N119NaaCaaT11AY.16.10.00047
ORF3a119N119delAAC---11AY.200.000039
ORF3a119N119KaaCaaA11AY.230.00007
ORF3a119N119DAacGac11AY.230.00007
ORF3a119N119NaaCaaT11AY.250.000006
ORF3a119N119DAacGac11AY.250.000006
ORF3a119N119SaAcaGc11AY.250.000006
ORF3a119N119NaaCaaT11AY.270.000065
ORF3a119N119SaAcaGc11AY.290.000016
ORF3a119N119delAAC---11AY.290.000016
ORF3a119N119DAaCGaT11AY.330.000067
ORF3a119N119DAacGac11AY.350.000233
ORF3a119N119DAacGac11AY.390.000025
ORF3a119N119NaaCaaT11AY.390.000025
ORF3a119N119delAAC---11AY.390.000025
ORF3a119N119SaAcaGc11AY.39.10.00004
ORF3a119N119YAacTac11AY.40.000002
ORF3a119N119delAAC---11AY.4.2.10.000149
ORF3a119N119delAAC---11AY.4.50.000107
ORF3a119N119HAacCac11AY.4.50.000107
ORF3a119N119KaaCaaA11AY.420.00004
ORF3a119N119SaAcaGc11AY.430.000004
ORF3a119N119HAacCac11AY.430.000004
ORF3a119N119KaaCaaG11AY.430.000004
ORF3a119N119delAAC---11AY.440.000006
ORF3a119N119YAacTac11AY.460.000104
ORF3a119N119KaaCaaG11AY.46.40.000165
ORF3a119N119DAacGac11AY.480.000465
ORF3a119N119KaaCaaA11AY.50.000021
ORF3a119N119delAAC---11AY.5.30.000337
ORF3a119N119NaaCaaT11AY.5.30.000337
ORF3a119N119YAacTac11AY.550.000917
ORF3a119N119NaaCaaT11AY.60.000041
ORF3a119N119delAAC---11AY.600.000938
ORF3a119N119delAAC---11AY.680.000274
ORF3a119N119YAacTac11AY.700.000209
ORF3a119N119SaAcaGc11AY.710.000475
ORF3a119N119DAacGac11AY.730.000665
ORF3a119N119KaaCaaA11AY.740.000116
ORF3a119N119DAacGac11AY.75.10.00018
ORF3a119N119KaaCaaA11AY.770.001127
ORF3a119N119HAacCac11AY.9.20.000037
ORF3a119N119NaaCaaT11AY.990.001049
ORF3a119N119NaaCaaT11B0.000128
ORF3a119N119DAacGac11B0.000128
ORF3a119N119KaaCaaA11B0.000128
ORF3a119N119delAAC---11B0.000128
ORF3a119N119YAacTac11B.10.000009
ORF3a119N119KaaCaaA11B.10.000009
ORF3a119N119KaaCaaA11B.1.10.000018
ORF3a119N119SaAcaGc11B.1.1.150.013514
ORF3a119N119SaAcaGc11B.1.1.2430.004082
ORF3a119N119NaaCaaT11B.1.1.2960.018182
ORF3a119N119delAAC---11B.1.1.3110.000358
ORF3a119N119delAAC---11B.1.1.3150.008475
ORF3a119N119YAacTac11B.1.1.3180.000302
ORF3a119N119delAAC---11B.1.1.4090.002833
ORF3a119N119IaAcaTc11B.1.1.4160.000905
ORF3a119N119delAAC---11B.1.1.4200.001006
ORF3a119N119NaaCaaT11B.1.1.5280.004808
ORF3a119N119RaACaGA11B.1.1.70.000001
ORF3a119N119del2AAc--c11B.1.1.70.000001
ORF3a119N119delAAC---11B.1.1400.018868
ORF3a119N119NaaCaaT11B.1.1460.004237
ORF3a119N119KaaCaaA11B.1.160.120.00641
ORF3a119N119IaAcaTc11B.1.160.220.006757
ORF3a119N119delAAC---11B.1.160.230.004831
ORF3a119N119YAacTac11B.1.1770.000013
ORF3a119N119HAacCac11B.1.1770.000013
ORF3a119N119KaaCaaG11B.1.1770.000013
ORF3a119N119DAacGac11B.1.177.320.00135
ORF3a119N119SaAcaGc11B.1.177.440.000519
ORF3a119N119SaAcaGc11B.1.177.530.002392
ORF3a119N119delAAC---11B.1.177.620.001192
ORF3a119N119IaAcaTc11B.1.20.000009
ORF3a119N119YAacTac11B.1.20.000009
ORF3a119N119DAacGac11B.1.2210.000071
ORF3a119N119TaAcaCc11B.1.2320.000537
ORF3a119N119HAacCac11B.1.2320.000537
ORF3a119N119NaaCaaT11B.1.2340.000132
ORF3a119N119KaaCaaA11B.1.3510.00003
ORF3a119N119SaAcaGc11B.1.3510.00003
ORF3a119N119KaaCaaG11B.1.360.000146
ORF3a119N119NaaCaaT11B.1.36.180.00042
ORF3a119N119KaaCaaA11B.1.4040.001302
ORF3a119N119YAacTac11B.1.4050.012346
ORF3a119N119delAAC---11B.1.416.10.001563
ORF3a119N119SaAcaGc11B.1.4270.00005
ORF3a119N119delAAC---11B.1.4290.000024
ORF3a119N119NaaCaaT11B.1.4360.001029
ORF3a119N119DAacGac11B.1.5750.000303
ORF3a119N119NaaCaaT11B.1.5820.000491
ORF3a119N119delAAC---11B.1.5960.000087
ORF3a119N119KaaCaaA11B.1.617.10.000129
ORF3a119N119delAAC---11B.1.617.10.000129
ORF3a119N119SaAcaGc11B.1.617.20.000004
ORF3a119N119KaaCaaA11B.1.617.20.000004
ORF3a119N119SaAcaGc11B.1.6190.000871
ORF3a119N119NaaCaaT11B.1.6370.000073
ORF3a119N119delAAC---11B.1.6380.052632
ORF3a119N119DAacGac11B.1.80.001972
ORF3a119N119NaaCaaT11B.230.002924
ORF3a119N119TaAcaCc11C.1.20.004255
ORF3a119N119DAacGac11C.36.30.000567
ORF3a119N119YAacTac11C.370.000116
ORF3a119N119DAacGac11P.10.000016
ORF3a119N119YAacTac11P.1.10.000318
ORF3a119N119SaAcaGc11P.20.000187
ORF3a119N119delAAC---11Q.40.000455
ORF3a119N119HAacCac11Q.80.000165
ORF3a119N119YAacTac11Q.80.000165
ORF3a119N119delAAC---11U.30.003861
ORF3a119N119HAacCac11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.