CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 118 | I118M | nonsyn | atA | atG | 2667 | 2667 | 1 | 25744-25746 | |
ORF3a | 118 | I118V | nonsyn | Ata | Gta | 990 | 990 | 1 | 25744-25746 | |
ORF3a | 118 | I118T | nonsyn | aTa | aCa | 623 | 611 | 0.980738 | 25744-25746 | |
ORF3a | 118 | I118T | nonsyn | aTA | aCG | 623 | 12 | 0.0192616 | 25744-25746 | |
ORF3a | 118 | I118del | del | ATA | --- | 99 | 99 | 1 | 25744-25746 | |
ORF3a | 118 | I118L | nonsyn | Ata | Tta | 56 | 41 | 0.732143 | 25744-25746 | |
ORF3a | 118 | I118L | nonsyn | Ata | Cta | 56 | 15 | 0.267857 | 25744-25746 | |
ORF3a | 118 | I118I | syn | atA | atT | 19 | 15 | 0.789474 | 25744-25746 | |
ORF3a | 118 | I118I | syn | atA | atC | 19 | 4 | 0.210526 | 25744-25746 | |
ORF3a | 118 | I118del1 | del | atA | at- | 10 | 4 | 0.4 | 25744-25746 | |
ORF3a | 118 | I118del1 | del | aTa | a-a | 10 | 2 | 0.2 | 25744-25746 | |
ORF3a | 118 | I118del1 | del | Ata | -ta | 10 | 2 | 0.2 | 25744-25746 | |
ORF3a | 118 | I118del1 | del | AtA | -tT | 10 | 2 | 0.2 | 25744-25746 | |
ORF3a | 118 | I118K | nonsyn | aTa | aAa | 4 | 4 | 1 | 25744-25746 | |
ORF3a | 118 | I118R | nonsyn | aTa | aGa | 1 | 1 | 1 | 25744-25746 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 118 | I118M | atA | atG | 2667 | 2667 | All | 0.00051 |
ORF3a | 118 | I118M | atA | atG | 2571 | 2571 | P.1.16 | 0.961841 |
ORF3a | 118 | I118V | Ata | Gta | 990 | 990 | All | 0.000189 |
ORF3a | 118 | I118T | aTa | aCa | 611 | 623 | All | 0.000117 |
ORF3a | 118 | I118T | aTA | aCG | 12 | 623 | All | 0.000002 |
ORF3a | 118 | I118V | Ata | Gta | 159 | 159 | B.1.1.7 | 0.000142 |
ORF3a | 118 | I118V | Ata | Gta | 111 | 111 | B.1.617.2 | 0.000418 |
ORF3a | 118 | I118del | ATA | --- | 99 | 99 | All | 0.000019 |
ORF3a | 118 | I118T | aTa | aCa | 89 | 89 | B.1.617.2 | 0.000335 |
ORF3a | 118 | I118T | aTa | aCa | 82 | 88 | B.1.1.7 | 0.000073 |
ORF3a | 118 | I118T | aTA | aCG | 6 | 88 | B.1.1.7 | 0.000005 |
ORF3a | 118 | I118T | aTa | aCa | 79 | 79 | AY.44 | 0.000481 |
ORF3a | 118 | I118V | Ata | Gta | 66 | 66 | B.1.177.81 | 0.012495 |
ORF3a | 118 | I118V | Ata | Gta | 63 | 63 | B.1.2 | 0.000555 |
ORF3a | 118 | I118V | Ata | Gta | 60 | 60 | P.1 | 0.000945 |
ORF3a | 118 | I118V | Ata | Gta | 57 | 57 | B.1.258 | 0.003793 |
ORF3a | 118 | I118L | Ata | Tta | 41 | 56 | All | 0.000008 |
ORF3a | 118 | I118L | Ata | Cta | 15 | 56 | All | 0.000003 |
ORF3a | 118 | I118V | Ata | Gta | 53 | 53 | AY.4 | 0.000082 |
ORF3a | 118 | I118V | Ata | Gta | 46 | 46 | AY.100 | 0.002116 |
ORF3a | 118 | I118T | aTa | aCa | 43 | 43 | B.1.562 | 0.796296 |
ORF3a | 118 | I118T | aTa | aCa | 38 | 38 | AY.103 | 0.000236 |
ORF3a | 118 | I118T | aTa | aCa | 35 | 35 | AY.46.6 | 0.002527 |
ORF3a | 118 | I118T | aTa | aCa | 34 | 34 | AY.4 | 0.000053 |
ORF3a | 118 | I118M | atA | atG | 29 | 29 | B.1.1.7 | 0.000026 |
ORF3a | 118 | I118V | Ata | Gta | 27 | 27 | AY.44 | 0.000164 |
ORF3a | 118 | I118V | Ata | Gta | 26 | 26 | AY.43 | 0.000115 |
ORF3a | 118 | I118V | Ata | Gta | 25 | 25 | AY.47 | 0.000778 |
ORF3a | 118 | I118V | Ata | Gta | 23 | 23 | AY.85 | 0.009825 |
ORF3a | 118 | I118M | atA | atG | 21 | 21 | P.1 | 0.000331 |
ORF3a | 118 | I118del | ATA | --- | 20 | 20 | B.1.1.7 | 0.000018 |
ORF3a | 118 | I118I | atA | atT | 15 | 19 | All | 0.000003 |
ORF3a | 118 | I118I | atA | atC | 4 | 19 | All | 0.000001 |
ORF3a | 118 | I118T | aTa | aCa | 19 | 19 | B.1.525 | 0.00215 |
ORF3a | 118 | I118V | Ata | Gta | 18 | 18 | AY.103 | 0.000112 |
ORF3a | 118 | I118T | aTa | aCa | 18 | 18 | AY.109 | 0.013314 |
ORF3a | 118 | I118V | Ata | Gta | 18 | 18 | P.1.1 | 0.005718 |
ORF3a | 118 | I118T | aTa | aCa | 15 | 16 | B.1.2 | 0.000132 |
ORF3a | 118 | I118T | aTA | aCG | 1 | 16 | B.1.2 | 0.000009 |
ORF3a | 118 | I118T | aTa | aCa | 16 | 16 | B.1.243 | 0.001113 |
ORF3a | 118 | I118V | Ata | Gta | 15 | 15 | B.1 | 0.000137 |
ORF3a | 118 | I118L | Ata | Tta | 15 | 15 | B.1.177.20 | 0.022762 |
ORF3a | 118 | I118T | aTa | aCa | 13 | 13 | AY.80 | 0.014673 |
ORF3a | 118 | I118V | Ata | Gta | 12 | 12 | AY.25 | 0.000072 |
ORF3a | 118 | I118V | Ata | Gta | 12 | 12 | AY.26 | 0.00034 |
ORF3a | 118 | I118T | aTa | aCa | 12 | 12 | AY.43 | 0.000053 |
ORF3a | 118 | I118V | Ata | Gta | 12 | 12 | C.37 | 0.001393 |
ORF3a | 118 | I118del1 | atA | at- | 4 | 10 | All | 0.000001 |
ORF3a | 118 | I118del1 | aTa | a-a | 2 | 10 | All | 0 |
ORF3a | 118 | I118del1 | Ata | -ta | 2 | 10 | All | 0 |
ORF3a | 118 | I118del1 | AtA | -tT | 2 | 10 | All | 0 |
ORF3a | 118 | I118V | Ata | Gta | 9 | 9 | AY.3 | 0.00009 |
ORF3a | 118 | I118V | Ata | Gta | 9 | 9 | AY.9.2 | 0.000331 |
ORF3a | 118 | I118del | ATA | --- | 9 | 9 | B.1 | 0.000082 |
ORF3a | 118 | I118V | Ata | Gta | 9 | 9 | B.1.160 | 0.000281 |
ORF3a | 118 | I118V | Ata | Gta | 8 | 8 | B.1.177 | 0.000105 |
ORF3a | 118 | I118T | aTa | aCa | 6 | 6 | AY.29 | 0.000095 |
ORF3a | 118 | I118del | ATA | --- | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 118 | I118del | ATA | --- | 6 | 6 | AY.43 | 0.000027 |
ORF3a | 118 | I118del | ATA | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF3a | 118 | I118del | ATA | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 118 | I118V | Ata | Gta | 5 | 5 | AY.119 | 0.000177 |
ORF3a | 118 | I118V | Ata | Gta | 5 | 5 | AY.36 | 0.000741 |
ORF3a | 118 | I118V | Ata | Gta | 5 | 5 | AY.39.1 | 0.000198 |
ORF3a | 118 | I118M | atA | atG | 5 | 5 | AY.4 | 0.000008 |
ORF3a | 118 | I118L | Ata | Tta | 3 | 5 | AY.4 | 0.000005 |
ORF3a | 118 | I118L | Ata | Cta | 2 | 5 | AY.4 | 0.000003 |
ORF3a | 118 | I118V | Ata | Gta | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 118 | I118T | aTa | aCa | 5 | 5 | AY.47 | 0.000156 |
ORF3a | 118 | I118T | aTa | aCa | 5 | 5 | AY.55 | 0.004587 |
ORF3a | 118 | I118V | Ata | Gta | 5 | 5 | B.1.1 | 0.000091 |
ORF3a | 118 | I118T | aTA | aCG | 3 | 5 | B.1.1 | 0.000054 |
ORF3a | 118 | I118T | aTa | aCa | 2 | 5 | B.1.1 | 0.000036 |
ORF3a | 118 | I118T | aTa | aCa | 5 | 5 | B.1.1.28 | 0.001556 |
ORF3a | 118 | I118T | aTa | aCa | 5 | 5 | B.1.1.519 | 0.000199 |
ORF3a | 118 | I118L | Ata | Tta | 3 | 5 | B.1.1.7 | 0.000003 |
ORF3a | 118 | I118L | Ata | Cta | 2 | 5 | B.1.1.7 | 0.000002 |
ORF3a | 118 | I118L | Ata | Cta | 4 | 5 | B.1.160 | 0.000125 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 5 | B.1.160 | 0.000031 |
ORF3a | 118 | I118T | aTa | aCa | 5 | 5 | B.1.349 | 0.003574 |
ORF3a | 118 | I118V | Ata | Gta | 5 | 5 | B.1.402 | 0.04902 |
ORF3a | 118 | I118T | aTa | aCa | 5 | 5 | B.1.427 | 0.000252 |
ORF3a | 118 | I118V | Ata | Gta | 5 | 5 | B.1.526 | 0.000118 |
ORF3a | 118 | I118K | aTa | aAa | 4 | 4 | All | 0.000001 |
ORF3a | 118 | I118V | Ata | Gta | 4 | 4 | AY.102 | 0.000106 |
ORF3a | 118 | I118T | aTa | aCa | 4 | 4 | AY.20 | 0.000155 |
ORF3a | 118 | I118T | aTa | aCa | 4 | 4 | AY.33 | 0.000267 |
ORF3a | 118 | I118V | Ata | Gta | 4 | 4 | AY.35 | 0.000932 |
ORF3a | 118 | I118T | aTa | aCa | 4 | 4 | AY.39 | 0.000099 |
ORF3a | 118 | I118M | atA | atG | 4 | 4 | AY.46.1 | 0.004107 |
ORF3a | 118 | I118M | atA | atG | 4 | 4 | B.1 | 0.000037 |
ORF3a | 118 | I118V | Ata | Gta | 4 | 4 | B.1.177.52 | 0.00703 |
ORF3a | 118 | I118T | aTa | aCa | 4 | 4 | B.1.429 | 0.000094 |
ORF3a | 118 | I118del | ATA | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 118 | I118T | aTa | aCa | 3 | 3 | AY.102 | 0.00008 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | AY.110 | 0.000338 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | AY.14 | 0.000264 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | AY.16.1 | 0.00141 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | AY.23.1 | 0.001252 |
ORF3a | 118 | I118del | ATA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | AY.74 | 0.000347 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 118 | I118M | atA | atG | 3 | 3 | AY.85 | 0.001282 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | B.1.1.153 | 0.003286 |
ORF3a | 118 | I118T | aTa | aCa | 3 | 3 | B.1.1.222 | 0.000612 |
ORF3a | 118 | I118T | aTa | aCa | 3 | 3 | B.1.177.57 | 0.000843 |
ORF3a | 118 | I118I | atA | atT | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | B.1.351 | 0.000089 |
ORF3a | 118 | I118T | aTa | aCa | 3 | 3 | B.1.582 | 0.001472 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | B.1.596 | 0.000261 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | B.1.628 | 0.001057 |
ORF3a | 118 | I118del | ATA | --- | 3 | 3 | P.1 | 0.000047 |
ORF3a | 118 | I118T | aTa | aCa | 3 | 3 | P.1 | 0.000047 |
ORF3a | 118 | I118V | Ata | Gta | 3 | 3 | Q.3 | 0.000435 |
ORF3a | 118 | I118del | ATA | --- | 2 | 2 | 0.111111 | |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | A.23.1 | 0.001408 |
ORF3a | 118 | I118M | atA | atG | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 118 | I118L | Ata | Tta | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 118 | I118L | Ata | Tta | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 118 | I118T | aTa | aCa | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 118 | I118T | aTa | aCa | 2 | 2 | AY.35 | 0.000466 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 118 | I118I | atA | atT | 1 | 2 | AY.4 | 0.000002 |
ORF3a | 118 | I118I | atA | atC | 1 | 2 | AY.4 | 0.000002 |
ORF3a | 118 | I118L | Ata | Tta | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 118 | I118I | atA | atT | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | AY.48 | 0.00093 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | AY.73 | 0.001331 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 118 | I118T | aTa | aCa | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 118 | I118T | aTa | aCa | 2 | 2 | B.1 | 0.000018 |
ORF3a | 118 | I118del1 | atA | at- | 1 | 2 | B.1 | 0.000009 |
ORF3a | 118 | I118del1 | Ata | -ta | 1 | 2 | B.1 | 0.000009 |
ORF3a | 118 | I118K | aTa | aAa | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 118 | I118M | atA | atG | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 118 | I118T | aTa | aCa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 118 | I118M | atA | atG | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 118 | I118I | atA | atC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 118 | I118I | atA | atT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF3a | 118 | I118T | aTa | aCa | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | B.1.177.2 | 0.009091 |
ORF3a | 118 | I118L | Ata | Tta | 2 | 2 | B.1.177.9 | 0.002663 |
ORF3a | 118 | I118L | Ata | Tta | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 118 | I118del1 | atA | at- | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 118 | I118T | aTa | aCa | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | B.1.427 | 0.000101 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | B.1.429 | 0.000047 |
ORF3a | 118 | I118T | aTa | aCa | 2 | 2 | B.1.526 | 0.000047 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | B.1.552 | 0.030303 |
ORF3a | 118 | I118del | ATA | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 2 | B.1.621 | 0.000089 |
ORF3a | 118 | I118T | aTA | aCG | 1 | 2 | B.1.621 | 0.000089 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | B.1.623 | 0.001073 |
ORF3a | 118 | I118del | ATA | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF3a | 118 | I118V | Ata | Gta | 2 | 2 | P.3 | 0.00319 |
ORF3a | 118 | I118I | atA | atT | 1 | 1 | 0.055556 | |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | A | 0.000387 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | A.2.4 | 0.003367 |
ORF3a | 118 | I118I | atA | atT | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AE.1 | 0.011364 |
ORF3a | 118 | I118R | aTa | aGa | 1 | 1 | All | 0 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.120.1 | 0.000321 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 118 | I118L | Ata | Cta | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 118 | I118L | Ata | Cta | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 118 | I118I | atA | atT | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 118 | I118L | Ata | Cta | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 118 | I118L | Ata | Cta | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.39.2 | 0.001541 |
ORF3a | 118 | I118K | aTa | aAa | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.4.1 | 0.000737 |
ORF3a | 118 | I118I | atA | atT | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 118 | I118L | Ata | Cta | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 118 | I118R | aTa | aGa | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.46.4 | 0.000165 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 118 | I118I | atA | atT | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AY.99 | 0.001049 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | AZ.2 | 0.000821 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B | 0.000128 |
ORF3a | 118 | I118L | Ata | Cta | 1 | 1 | B | 0.000128 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B | 0.000128 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 1 | B.1 | 0.000009 |
ORF3a | 118 | I118K | aTa | aAa | 1 | 1 | B.1 | 0.000009 |
ORF3a | 118 | I118I | atA | atC | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 118 | I118L | Ata | Cta | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 118 | I118del1 | Ata | -ta | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.1.196 | 0.005714 |
ORF3a | 118 | I118del1 | AtA | -tT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 118 | I118del1 | aTa | a-a | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 118 | I118del1 | AtA | -tT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.1.442 | 0.018519 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.1.456 | 0.055556 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.1.518 | 0.006329 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF3a | 118 | I118del1 | aTa | a-a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 118 | I118T | aTA | aCG | 1 | 1 | B.1.1.98 | 0.018519 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 118 | I118I | atA | atT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.182 | 0.007246 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 1 | B.1.235 | 0.002519 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 118 | I118I | atA | atT | 1 | 1 | B.1.243.2 | 0.014493 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.291 | 0.019231 |
ORF3a | 118 | I118del1 | atA | at- | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.36.19 | 0.009259 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 118 | I118L | Ata | Tta | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.404 | 0.001302 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.578 | 0.017857 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.598 | 0.016949 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 118 | I118I | atA | atT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 118 | I118I | atA | atC | 1 | 1 | B.40 | 0.000364 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | D.2 | 0.000075 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | P.5 | 0.013699 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 118 | I118T | aTa | aCa | 1 | 1 | R.1 | 0.00009 |
ORF3a | 118 | I118M | atA | atG | 1 | 1 | R.1 | 0.00009 |
ORF3a | 118 | I118V | Ata | Gta | 1 | 1 | R.1 | 0.00009 |
ORF3a | 118 | I118del | ATA | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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