CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 118

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a118I118MnonsynatAatG26672667125744-25746
ORF3a118I118VnonsynAtaGta990990125744-25746
ORF3a118I118TnonsynaTaaCa6236110.98073825744-25746
ORF3a118I118TnonsynaTAaCG623120.019261625744-25746
ORF3a118I118deldelATA---9999125744-25746
ORF3a118I118LnonsynAtaTta56410.73214325744-25746
ORF3a118I118LnonsynAtaCta56150.26785725744-25746
ORF3a118I118IsynatAatT19150.78947425744-25746
ORF3a118I118IsynatAatC1940.21052625744-25746
ORF3a118I118del1delatAat-1040.425744-25746
ORF3a118I118del1delaTaa-a1020.225744-25746
ORF3a118I118del1delAta-ta1020.225744-25746
ORF3a118I118del1delAtA-tT1020.225744-25746
ORF3a118I118KnonsynaTaaAa44125744-25746
ORF3a118I118RnonsynaTaaGa11125744-25746

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a118I118MatAatG26672667All0.00051
ORF3a118I118MatAatG25712571P.1.160.961841
ORF3a118I118VAtaGta990990All0.000189
ORF3a118I118TaTaaCa611623All0.000117
ORF3a118I118TaTAaCG12623All0.000002
ORF3a118I118VAtaGta159159B.1.1.70.000142
ORF3a118I118VAtaGta111111B.1.617.20.000418
ORF3a118I118delATA---9999All0.000019
ORF3a118I118TaTaaCa8989B.1.617.20.000335
ORF3a118I118TaTaaCa8288B.1.1.70.000073
ORF3a118I118TaTAaCG688B.1.1.70.000005
ORF3a118I118TaTaaCa7979AY.440.000481
ORF3a118I118VAtaGta6666B.1.177.810.012495
ORF3a118I118VAtaGta6363B.1.20.000555
ORF3a118I118VAtaGta6060P.10.000945
ORF3a118I118VAtaGta5757B.1.2580.003793
ORF3a118I118LAtaTta4156All0.000008
ORF3a118I118LAtaCta1556All0.000003
ORF3a118I118VAtaGta5353AY.40.000082
ORF3a118I118VAtaGta4646AY.1000.002116
ORF3a118I118TaTaaCa4343B.1.5620.796296
ORF3a118I118TaTaaCa3838AY.1030.000236
ORF3a118I118TaTaaCa3535AY.46.60.002527
ORF3a118I118TaTaaCa3434AY.40.000053
ORF3a118I118MatAatG2929B.1.1.70.000026
ORF3a118I118VAtaGta2727AY.440.000164
ORF3a118I118VAtaGta2626AY.430.000115
ORF3a118I118VAtaGta2525AY.470.000778
ORF3a118I118VAtaGta2323AY.850.009825
ORF3a118I118MatAatG2121P.10.000331
ORF3a118I118delATA---2020B.1.1.70.000018
ORF3a118I118IatAatT1519All0.000003
ORF3a118I118IatAatC419All0.000001
ORF3a118I118TaTaaCa1919B.1.5250.00215
ORF3a118I118VAtaGta1818AY.1030.000112
ORF3a118I118TaTaaCa1818AY.1090.013314
ORF3a118I118VAtaGta1818P.1.10.005718
ORF3a118I118TaTaaCa1516B.1.20.000132
ORF3a118I118TaTAaCG116B.1.20.000009
ORF3a118I118TaTaaCa1616B.1.2430.001113
ORF3a118I118VAtaGta1515B.10.000137
ORF3a118I118LAtaTta1515B.1.177.200.022762
ORF3a118I118TaTaaCa1313AY.800.014673
ORF3a118I118VAtaGta1212AY.250.000072
ORF3a118I118VAtaGta1212AY.260.00034
ORF3a118I118TaTaaCa1212AY.430.000053
ORF3a118I118VAtaGta1212C.370.001393
ORF3a118I118del1atAat-410All0.000001
ORF3a118I118del1aTaa-a210All0
ORF3a118I118del1Ata-ta210All0
ORF3a118I118del1AtA-tT210All0
ORF3a118I118VAtaGta99AY.30.00009
ORF3a118I118VAtaGta99AY.9.20.000331
ORF3a118I118delATA---99B.10.000082
ORF3a118I118VAtaGta99B.1.1600.000281
ORF3a118I118VAtaGta88B.1.1770.000105
ORF3a118I118TaTaaCa66AY.290.000095
ORF3a118I118delATA---66AY.40.000009
ORF3a118I118delATA---66AY.430.000027
ORF3a118I118delATA---66B.1.1770.000079
ORF3a118I118delATA---66B.1.617.20.000023
ORF3a118I118VAtaGta55AY.1190.000177
ORF3a118I118VAtaGta55AY.360.000741
ORF3a118I118VAtaGta55AY.39.10.000198
ORF3a118I118MatAatG55AY.40.000008
ORF3a118I118LAtaTta35AY.40.000005
ORF3a118I118LAtaCta25AY.40.000003
ORF3a118I118VAtaGta55AY.450.000608
ORF3a118I118TaTaaCa55AY.470.000156
ORF3a118I118TaTaaCa55AY.550.004587
ORF3a118I118VAtaGta55B.1.10.000091
ORF3a118I118TaTAaCG35B.1.10.000054
ORF3a118I118TaTaaCa25B.1.10.000036
ORF3a118I118TaTaaCa55B.1.1.280.001556
ORF3a118I118TaTaaCa55B.1.1.5190.000199
ORF3a118I118LAtaTta35B.1.1.70.000003
ORF3a118I118LAtaCta25B.1.1.70.000002
ORF3a118I118LAtaCta45B.1.1600.000125
ORF3a118I118LAtaTta15B.1.1600.000031
ORF3a118I118TaTaaCa55B.1.3490.003574
ORF3a118I118VAtaGta55B.1.4020.04902
ORF3a118I118TaTaaCa55B.1.4270.000252
ORF3a118I118VAtaGta55B.1.5260.000118
ORF3a118I118KaTaaAa44All0.000001
ORF3a118I118VAtaGta44AY.1020.000106
ORF3a118I118TaTaaCa44AY.200.000155
ORF3a118I118TaTaaCa44AY.330.000267
ORF3a118I118VAtaGta44AY.350.000932
ORF3a118I118TaTaaCa44AY.390.000099
ORF3a118I118MatAatG44AY.46.10.004107
ORF3a118I118MatAatG44B.10.000037
ORF3a118I118VAtaGta44B.1.177.520.00703
ORF3a118I118TaTaaCa44B.1.4290.000094
ORF3a118I118delATA---44B.1.5250.000453
ORF3a118I118TaTaaCa33AY.1020.00008
ORF3a118I118VAtaGta33AY.1100.000338
ORF3a118I118VAtaGta33AY.140.000264
ORF3a118I118VAtaGta33AY.16.10.00141
ORF3a118I118VAtaGta33AY.23.10.001252
ORF3a118I118delATA---33AY.250.000018
ORF3a118I118VAtaGta33AY.740.000347
ORF3a118I118VAtaGta33AY.750.000168
ORF3a118I118MatAatG33AY.850.001282
ORF3a118I118VAtaGta33B.1.1.1530.003286
ORF3a118I118TaTaaCa33B.1.1.2220.000612
ORF3a118I118TaTaaCa33B.1.177.570.000843
ORF3a118I118IatAatT33B.1.20.000026
ORF3a118I118VAtaGta33B.1.3510.000089
ORF3a118I118TaTaaCa33B.1.5820.001472
ORF3a118I118VAtaGta33B.1.5960.000261
ORF3a118I118VAtaGta33B.1.6280.001057
ORF3a118I118delATA---33P.10.000047
ORF3a118I118TaTaaCa33P.10.000047
ORF3a118I118VAtaGta33Q.30.000435
ORF3a118I118delATA---220.111111
ORF3a118I118VAtaGta22A.23.10.001408
ORF3a118I118MatAatG22AY.1020.000053
ORF3a118I118LAtaTta22AY.1030.000012
ORF3a118I118LAtaTta22AY.160.000759
ORF3a118I118VAtaGta22AY.290.000032
ORF3a118I118TaTaaCa22AY.30.00002
ORF3a118I118TaTaaCa22AY.350.000466
ORF3a118I118VAtaGta22AY.390.000049
ORF3a118I118IatAatT12AY.40.000002
ORF3a118I118IatAatC12AY.40.000002
ORF3a118I118LAtaTta22AY.430.000009
ORF3a118I118IatAatT22AY.440.000012
ORF3a118I118VAtaGta22AY.480.00093
ORF3a118I118VAtaGta22AY.730.001331
ORF3a118I118VAtaGta22AY.75.10.000361
ORF3a118I118TaTaaCa22AY.90.000135
ORF3a118I118VAtaGta22AY.90.000135
ORF3a118I118VAtaGta22AY.980.000158
ORF3a118I118TaTaaCa22B.10.000018
ORF3a118I118del1atAat-12B.10.000009
ORF3a118I118del1Ata-ta12B.10.000009
ORF3a118I118KaTaaAa22B.1.10.000036
ORF3a118I118MatAatG22B.1.10.000036
ORF3a118I118TaTaaCa22B.1.1.2140.000111
ORF3a118I118VAtaGta22B.1.1.250.001137
ORF3a118I118MatAatG22B.1.1.280.000622
ORF3a118I118IatAatC12B.1.1.70.000001
ORF3a118I118IatAatT12B.1.1.70.000001
ORF3a118I118TaTaaCa22B.1.1770.000026
ORF3a118I118VAtaGta22B.1.177.20.009091
ORF3a118I118LAtaTta22B.1.177.90.002663
ORF3a118I118LAtaTta22B.1.20.000018
ORF3a118I118del1atAat-22B.1.20.000018
ORF3a118I118TaTaaCa22B.1.3510.000059
ORF3a118I118VAtaGta22B.1.4270.000101
ORF3a118I118VAtaGta22B.1.4290.000047
ORF3a118I118TaTaaCa22B.1.5260.000047
ORF3a118I118VAtaGta22B.1.5520.030303
ORF3a118I118delATA---22B.1.6210.000177
ORF3a118I118TaTaaCa12B.1.6210.000089
ORF3a118I118TaTAaCG12B.1.6210.000089
ORF3a118I118VAtaGta22B.1.6230.001073
ORF3a118I118delATA---22P.1.150.000465
ORF3a118I118VAtaGta22P.30.00319
ORF3a118I118IatAatT110.055556
ORF3a118I118delATA---11A0.000387
ORF3a118I118TaTaaCa11A.2.40.003367
ORF3a118I118IatAatT11A.2.50.000499
ORF3a118I118LAtaTta11A.23.10.000704
ORF3a118I118delATA---11AD.20.000219
ORF3a118I118VAtaGta11AE.10.011364
ORF3a118I118RaTaaGa11All0
ORF3a118I118delATA---11AV.10.005051
ORF3a118I118MatAatG11AY.1000.000046
ORF3a118I118LAtaTta11AY.1000.000046
ORF3a118I118delATA---11AY.1000.000046
ORF3a118I118VAtaGta11AY.1050.000643
ORF3a118I118VAtaGta11AY.1070.000466
ORF3a118I118delATA---11AY.1110.000183
ORF3a118I118VAtaGta11AY.1130.000142
ORF3a118I118TaTaaCa11AY.1140.000231
ORF3a118I118LAtaTta11AY.1160.000287
ORF3a118I118VAtaGta11AY.1180.000063
ORF3a118I118delATA---11AY.1200.000037
ORF3a118I118TaTaaCa11AY.1200.000037
ORF3a118I118VAtaGta11AY.1200.000037
ORF3a118I118TaTaaCa11AY.120.10.000321
ORF3a118I118delATA---11AY.200.000039
ORF3a118I118VAtaGta11AY.200.000039
ORF3a118I118VAtaGta11AY.230.00007
ORF3a118I118MatAatG11AY.23.10.000417
ORF3a118I118TaTaaCa11AY.240.000431
ORF3a118I118LAtaCta11AY.250.000006
ORF3a118I118TaTaaCa11AY.250.000006
ORF3a118I118TaTaaCa11AY.260.000028
ORF3a118I118TaTaaCa11AY.270.000065
ORF3a118I118delATA---11AY.290.000016
ORF3a118I118LAtaCta11AY.30.00001
ORF3a118I118IatAatT11AY.3.10.000085
ORF3a118I118VAtaGta11AY.330.000067
ORF3a118I118LAtaCta11AY.340.000097
ORF3a118I118MatAatG11AY.340.000097
ORF3a118I118VAtaGta11AY.34.10.00051
ORF3a118I118LAtaCta11AY.360.000148
ORF3a118I118delATA---11AY.390.000025
ORF3a118I118MatAatG11AY.390.000025
ORF3a118I118TaTaaCa11AY.39.20.001541
ORF3a118I118KaTaaAa11AY.40.000002
ORF3a118I118VAtaGta11AY.4.10.000737
ORF3a118I118IatAatT11AY.4.20.000022
ORF3a118I118delATA---11AY.4.2.10.000149
ORF3a118I118VAtaGta11AY.4.2.10.000149
ORF3a118I118VAtaGta11AY.4.40.000409
ORF3a118I118TaTaaCa11AY.4.40.000409
ORF3a118I118LAtaCta11AY.4.50.000107
ORF3a118I118delATA---11AY.4.50.000107
ORF3a118I118VAtaGta11AY.4.50.000107
ORF3a118I118RaTaaGa11AY.430.000004
ORF3a118I118MatAatG11AY.430.000004
ORF3a118I118delATA---11AY.440.000006
ORF3a118I118MatAatG11AY.440.000006
ORF3a118I118VAtaGta11AY.46.40.000165
ORF3a118I118VAtaGta11AY.50.000021
ORF3a118I118delATA---11AY.5.30.000337
ORF3a118I118VAtaGta11AY.5.40.000277
ORF3a118I118VAtaGta11AY.520.000814
ORF3a118I118LAtaTta11AY.550.000917
ORF3a118I118TaTaaCa11AY.60.000041
ORF3a118I118VAtaGta11AY.60.000041
ORF3a118I118LAtaTta11AY.60.000041
ORF3a118I118delATA---11AY.600.000938
ORF3a118I118VAtaGta11AY.610.000105
ORF3a118I118VAtaGta11AY.620.000436
ORF3a118I118delATA---11AY.680.000274
ORF3a118I118IatAatT11AY.9.10.000084
ORF3a118I118MatAatG11AY.9.20.000037
ORF3a118I118VAtaGta11AY.910.00073
ORF3a118I118MatAatG11AY.910.00073
ORF3a118I118VAtaGta11AY.950.000761
ORF3a118I118TaTaaCa11AY.990.001049
ORF3a118I118TaTaaCa11AZ.20.000821
ORF3a118I118MatAatG11B0.000128
ORF3a118I118LAtaCta11B0.000128
ORF3a118I118delATA---11B0.000128
ORF3a118I118LAtaTta11B.10.000009
ORF3a118I118KaTaaAa11B.10.000009
ORF3a118I118IatAatC11B.1.10.000018
ORF3a118I118LAtaCta11B.1.10.000018
ORF3a118I118TaTaaCa11B.1.1.10.000327
ORF3a118I118del1Ata-ta11B.1.1.1920.002309
ORF3a118I118TaTaaCa11B.1.1.1960.005714
ORF3a118I118del1AtA-tT11B.1.1.2160.00089
ORF3a118I118VAtaGta11B.1.1.2160.00089
ORF3a118I118del1aTaa-a11B.1.1.250.000569
ORF3a118I118VAtaGta11B.1.1.2650.003155
ORF3a118I118MatAatG11B.1.1.2770.000759
ORF3a118I118VAtaGta11B.1.1.2770.000759
ORF3a118I118del1AtA-tT11B.1.1.3060.000438
ORF3a118I118delATA---11B.1.1.3110.000358
ORF3a118I118delATA---11B.1.1.3150.008475
ORF3a118I118MatAatG11B.1.1.3170.000412
ORF3a118I118TaTaaCa11B.1.1.390.00051
ORF3a118I118delATA---11B.1.1.4090.002833
ORF3a118I118delATA---11B.1.1.4200.001006
ORF3a118I118MatAatG11B.1.1.4420.018519
ORF3a118I118TaTaaCa11B.1.1.4560.055556
ORF3a118I118TaTaaCa11B.1.1.500.000679
ORF3a118I118VAtaGta11B.1.1.500.000679
ORF3a118I118VAtaGta11B.1.1.5180.006329
ORF3a118I118TaTaaCa11B.1.1.630.000386
ORF3a118I118del1aTaa-a11B.1.1.70.000001
ORF3a118I118TaTAaCG11B.1.1.980.018519
ORF3a118I118delATA---11B.1.1400.018868
ORF3a118I118IatAatT11B.1.160.150.00495
ORF3a118I118VAtaGta11B.1.160.160.000929
ORF3a118I118delATA---11B.1.160.230.004831
ORF3a118I118LAtaTta11B.1.1770.000013
ORF3a118I118MatAatG11B.1.1770.000013
ORF3a118I118MatAatG11B.1.177.210.000076
ORF3a118I118VAtaGta11B.1.177.40.000211
ORF3a118I118TaTaaCa11B.1.177.40.000211
ORF3a118I118MatAatG11B.1.177.440.000519
ORF3a118I118delATA---11B.1.177.620.001192
ORF3a118I118MatAatG11B.1.177.730.000566
ORF3a118I118TaTaaCa11B.1.177.820.000477
ORF3a118I118VAtaGta11B.1.1820.007246
ORF3a118I118MatAatG11B.1.20.000009
ORF3a118I118MatAatG11B.1.2210.000071
ORF3a118I118VAtaGta11B.1.2320.000537
ORF3a118I118LAtaTta11B.1.2350.002519
ORF3a118I118VAtaGta11B.1.2410.000812
ORF3a118I118IatAatT11B.1.243.20.014493
ORF3a118I118VAtaGta11B.1.258.170.000104
ORF3a118I118TaTaaCa11B.1.2910.019231
ORF3a118I118del1atAat-11B.1.36.100.004785
ORF3a118I118MatAatG11B.1.36.190.009259
ORF3a118I118TaTaaCa11B.1.36.290.000517
ORF3a118I118LAtaTta11B.1.36.290.000517
ORF3a118I118TaTaaCa11B.1.3690.000285
ORF3a118I118TaTaaCa11B.1.3910.001127
ORF3a118I118TaTaaCa11B.1.4040.001302
ORF3a118I118delATA---11B.1.416.10.001563
ORF3a118I118delATA---11B.1.4290.000024
ORF3a118I118VAtaGta11B.1.5250.000113
ORF3a118I118MatAatG11B.1.5260.000024
ORF3a118I118TaTaaCa11B.1.5780.017857
ORF3a118I118delATA---11B.1.5960.000087
ORF3a118I118TaTaaCa11B.1.5980.016949
ORF3a118I118delATA---11B.1.617.10.000129
ORF3a118I118IatAatT11B.1.617.20.000004
ORF3a118I118VAtaGta11B.1.617.30.002985
ORF3a118I118VAtaGta11B.1.6210.000089
ORF3a118I118TaTaaCa11B.1.6370.000073
ORF3a118I118delATA---11B.1.6380.052632
ORF3a118I118IatAatC11B.400.000364
ORF3a118I118TaTaaCa11B.6.60.000889
ORF3a118I118VAtaGta11C.36.30.000567
ORF3a118I118MatAatG11D.20.000075
ORF3a118I118MatAatG11P.1.10.000318
ORF3a118I118VAtaGta11P.1.130.000898
ORF3a118I118VAtaGta11P.1.150.000232
ORF3a118I118MatAatG11P.50.013699
ORF3a118I118delATA---11Q.40.000455
ORF3a118I118TaTaaCa11Q.80.000165
ORF3a118I118VAtaGta11Q.80.000165
ORF3a118I118TaTaaCa11R.10.00009
ORF3a118I118MatAatG11R.10.00009
ORF3a118I118VAtaGta11R.10.00009
ORF3a118I118delATA---11U.30.003861