CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 112 & Codon = Ttc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a112V112FnonsynGtcTtc839083700.99761625726-25728

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a112V112FGtcTtc83708390All0.001601
ORF3a112V112FGtcTtc13861392AY.40.002157
ORF3a112V112FGtcTtc976976AY.430.004324
ORF3a112V112FGtcTtc631635B.1.1.70.000565
ORF3a112V112FGtcTtc602602B.1.1.2220.122807
ORF3a112V112FGtcTtc377377B.1.617.20.00142
ORF3a112V112FGtcTtc361361B.1.5960.031457
ORF3a112V112FGtcTtc326326B.1.2410.26461
ORF3a112V112FGtcTtc293293AY.1190.010345
ORF3a112V112FGtcTtc256256B.1.1770.003371
ORF3a112V112FGtcTtc236236AY.250.001419
ORF3a112V112FGtcTtc194194B.10.001777
ORF3a112V112FGtcTtc183183P.10.002883
ORF3a112V112FGtcTtc125130AY.390.003089
ORF3a112V112FGtcTtc123123B.1.4800.30597
ORF3a112V112FGtcTtc109109AY.1030.000677
ORF3a112V112FGtcTtc9191Q.10.011496
ORF3a112V112FGtcTtc8484AY.130.013522
ORF3a112V112FGtcTtc8484B.1.3510.002497
ORF3a112V112FGtcTtc8080AY.790.096852
ORF3a112V112FGtcTtc7979AY.440.000481
ORF3a112V112FGtcTtc7575AY.1020.001989
ORF3a112V112FGtcTtc7474B.1.20.000652
ORF3a112V112FGtcTtc5959AY.46.60.00426
ORF3a112V112FGtcTtc5656AY.1000.002576
ORF3a112V112FGtcTtc5353AY.30.000527
ORF3a112V112FGtcTtc5151AY.260.001444
ORF3a112V112FGtcTtc5050B.1.2430.003479
ORF3a112V112FGtcTtc4949B.1.1600.001528
ORF3a112V112FGtcTtc4444B.1.360.00642
ORF3a112V112FGtcTtc4343AY.50.000888
ORF3a112V112FGtcTtc4242B.1.1.5190.001668
ORF3a112V112FGtcTtc3940B.1.10.000707
ORF3a112V112FGtcTtc3939B.1.2400.008407
ORF3a112V112FGtcTtc3838B.1.4090.029687
ORF3a112V112FGtcTtc3737B.1.438.10.003969
ORF3a112V112FGtcTtc3333AY.290.000521
ORF3a112V112FGtcTtc3131B.1.4290.000729
ORF3a112V112FGtcTtc2727B.1.5260.000635
ORF3a112V112FGtcTtc2525AY.1210.003383
ORF3a112V112FGtcTtc2525AY.420.001006
ORF3a112V112FGtcTtc2323AY.9.20.000845
ORF3a112V112FGtcTtc2121AY.470.000653
ORF3a112V112FGtcTtc2020AY.1170.00169
ORF3a112V112FGtcTtc2020AY.46.20.012706
ORF3a112V112FGtcTtc1919AY.900.013005
ORF3a112V112FGtcTtc1818AY.330.001202
ORF3a112V112FGtcTtc1818AY.98.10.000872
ORF3a112V112FGtcTtc1717AY.200.000661
ORF3a112V112FGtcTtc1717AY.460.001769
ORF3a112V112FGtcTtc1717B.1.258.170.001768
ORF3a112V112FGtcTtc1616AY.4.20.000347
ORF3a112V112FGtcTtc1515AY.230.001046
ORF3a112V112FGtcTtc1414AY.46.50.002778
ORF3a112V112FGtcTtc1414B.1.177.100.012291
ORF3a112V112FGtcTtc1414B.1.2580.000932
ORF3a112V112FGtcTtc1414B.4.81
ORF3a112V112FGtcTtc1313C.370.001509
ORF3a112V112FGtcTtc1212P.1.170.001941
ORF3a112V112FGtcTtc1111AY.1010.005395
ORF3a112V112FGtcTtc1111B.1.258.20.04955
ORF3a112V112FGtcTtc1010AY.99.20.000922
ORF3a112V112FGtcTtc1010B.1.4710.027322
ORF3a112V112FGtcTtc1010P.1.140.000478
ORF3a112V112FGtcTtc99B.1.4260.009082
ORF3a112V112FGtcTtc88AY.450.000973
ORF3a112V112FGtcTtc88B.1.177.860.001468
ORF3a112V112FGtcTtc88B.1.5970.037037
ORF3a112V112FGtcTtc77AY.410.002058
ORF3a112V112FGtcTtc77AY.540.000667
ORF3a112V112FGtcTtc77AY.930.001912
ORF3a112V112FGtcTtc77AY.980.000553
ORF3a112V112FGtcTtc77B.1.1.2140.000388
ORF3a112V112FGtcTtc77B.1.1.3060.003069
ORF3a112V112FGtcTtc77B.1.4270.000353
ORF3a112V112FGtcTtc77B.1.6210.00062
ORF3a112V112FGtcTtc77B.1.6280.002467
ORF3a112V112FGtcTtc77D.20.000525
ORF3a112V112FGtcTtc77P.20.001306
ORF3a112V112FGtcTtc77W.10.06087
ORF3a112V112FGtcTtc66AY.1060.002009
ORF3a112V112FGtcTtc66AY.1200.000223
ORF3a112V112FGtcTtc66AY.730.003992
ORF3a112V112FGtcTtc66AY.880.005305
ORF3a112V112FGtcTtc66B.1.1.10.00196
ORF3a112V112FGtcTtc66B.1.5450.086957
ORF3a112V112FGtcTtc66B.1.617.10.000774
ORF3a112V112FGtcTtc66B.270.092308
ORF3a112V112FGtcTtc55AY.1130.000712
ORF3a112V112FGtcTtc55AY.39.10.000198
ORF3a112V112FGtcTtc55AY.46.40.000823
ORF3a112V112FGtcTtc55AY.620.002179
ORF3a112V112FGtcTtc55AY.7.10.000564
ORF3a112V112FGtcTtc55AY.840.002187
ORF3a112V112FGtcTtc35B.1.1.280.000934
ORF3a112V112FGtcTtc55B.1.1.3170.002058
ORF3a112V112FGtcTtc55B.1.1.330.002104
ORF3a112V112FGtcTtc55B.1.1.3480.003981
ORF3a112V112FGtcTtc240.111111
ORF3a112V112FGtcTtc44AY.10.001583
ORF3a112V112FGtcTtc44AY.100.00212
ORF3a112V112FGtcTtc44AY.1070.001864
ORF3a112V112FGtcTtc44AY.1100.000451
ORF3a112V112FGtcTtc44AY.320.00213
ORF3a112V112FGtcTtc44AY.340.000388
ORF3a112V112FGtcTtc44AY.510.003636
ORF3a112V112FGtcTtc44AY.570.002625
ORF3a112V112FGtcTtc44AY.60.000165
ORF3a112V112FGtcTtc44AY.740.000463
ORF3a112V112FGtcTtc44AY.860.00332
ORF3a112V112FGtcTtc44AY.90.00027
ORF3a112V112FGtcTtc44B.1.1.2690.005413
ORF3a112V112FGtcTtc44B.1.1280.002541
ORF3a112V112FGtcTtc44B.1.2320.002149
ORF3a112V112FGtcTtc44B.1.36.80.004
ORF3a112V112FGtcTtc44B.1.5250.000453
ORF3a112V112FGtcTtc44P.1.120.001936
ORF3a112V112FGtcTtc44Q.80.00066
ORF3a112V112FGtcTtc44R.10.00036
ORF3a112V112FGtcTtc33AY.1090.002219
ORF3a112V112FGtcTtc33AY.1160.00086
ORF3a112V112FGtcTtc33AY.190.003421
ORF3a112V112FGtcTtc33AY.3.10.000256
ORF3a112V112FGtcTtc33AY.4.50.000322
ORF3a112V112FGtcTtc33AY.5.40.00083
ORF3a112V112FGtcTtc33AY.550.002752
ORF3a112V112FGtcTtc33AY.580.002722
ORF3a112V112FGtcTtc33AY.610.000314
ORF3a112V112FGtcTtc33AY.650.001599
ORF3a112V112FGtcTtc33AY.9.10.000251
ORF3a112V112FGtcTtc33B.1.1.2200.005576
ORF3a112V112FGtcTtc33B.1.1.3700.037975
ORF3a112V112FGtcTtc33B.1.1.470.016043
ORF3a112V112FGtcTtc33B.1.1.700.001023
ORF3a112V112FGtcTtc33B.1.110.30.002155
ORF3a112V112FGtcTtc33B.1.177.870.002183
ORF3a112V112FGtcTtc33B.1.1790.011278
ORF3a112V112FGtcTtc33B.1.258.110.001189
ORF3a112V112FGtcTtc33B.1.36.170.001482
ORF3a112V112FGtcTtc33B.1.3890.003006
ORF3a112V112FGtcTtc33B.1.4430.014019
ORF3a112V112FGtcTtc33B.1.466.20.001174
ORF3a112V112FGtcTtc33B.1.4740.005703
ORF3a112V112FGtcTtc33C.180.007772
ORF3a112V112FGtcTtc33P.40.011407
ORF3a112V112FGtcTtc22A0.000774
ORF3a112V112FGtcTtc22AY.120.000632
ORF3a112V112FGtcTtc22AY.160.000759
ORF3a112V112FGtcTtc22AY.16.10.00094
ORF3a112V112FGtcTtc22AY.220.004184
ORF3a112V112FGtcTtc22AY.4.30.001684
ORF3a112V112FGtcTtc22AY.4.40.000818
ORF3a112V112FGtcTtc22AY.670.000929
ORF3a112V112FGtcTtc22AY.7.20.001119
ORF3a112V112FGtcTtc22AY.700.000417
ORF3a112V112FGtcTtc22AY.750.000112
ORF3a112V112FGtcTtc22AY.820.002714
ORF3a112V112FGtcTtc22AY.910.001461
ORF3a112V112FGtcTtc22AY.940.000885
ORF3a112V112FGtcTtc22AY.990.002099
ORF3a112V112FGtcTtc22B0.000256
ORF3a112V112FGtcTtc22B.1.1.2160.001781
ORF3a112V112FGtcTtc22B.1.1.2190.01
ORF3a112V112FGtcTtc22B.1.1.2630.003115
ORF3a112V112FGtcTtc22B.1.1.2860.005797
ORF3a112V112FGtcTtc22B.1.1.2940.002532
ORF3a112V112FGtcTtc22B.1.1.3050.007722
ORF3a112V112FGtcTtc22B.1.1.5280.009615
ORF3a112V112FGtcTtc22B.1.1690.029851
ORF3a112V112FGtcTtc22B.1.177.40.000422
ORF3a112V112FGtcTtc22B.1.177.750.002081
ORF3a112V112FGtcTtc22B.1.2210.000142
ORF3a112V112FGtcTtc22B.1.3110.000549
ORF3a112V112FGtcTtc22B.1.3400.008584
ORF3a112V112FGtcTtc22B.1.351.10.076923
ORF3a112V112FGtcTtc22B.1.36.220.002415
ORF3a112V112FGtcTtc22B.1.4590.008163
ORF3a112V112FGtcTtc22B.1.4970.00063
ORF3a112V112FGtcTtc22B.1.5580.009132
ORF3a112V112FGtcTtc22B.1.5930.021739
ORF3a112V112FGtcTtc22C.37.10.005236
ORF3a112V112FGtcTtc22P.1.17.10.00175
ORF3a112V112FGtcTtc22P.1.70.000639
ORF3a112V112FGtcTtc22Q.20.001227
ORF3a112V112FGtcTtc11A.2.40.003367
ORF3a112V112FGtcTtc11A.2.50.000499
ORF3a112V112FGtcTtc11A.23.10.000704
ORF3a112V112FGtcTtc11A.50.001923
ORF3a112V112FGtcTtc11AD.20.000219
ORF3a112V112FGtcTtc11AQ.20.111111
ORF3a112V112FGtcTtc11AY.1050.000643
ORF3a112V112FGtcTtc11AY.1080.001103
ORF3a112V112FGtcTtc11AY.1180.000063
ORF3a112V112FGtcTtc11AY.120.10.000321
ORF3a112V112FGtcTtc11AY.29.10.000221
ORF3a112V112FGtcTtc11AY.34.10.00051
ORF3a112V112FGtcTtc11AY.370.000316
ORF3a112V112FGtcTtc11AY.4.10.000737
ORF3a112V112FGtcTtc11AY.530.000288
ORF3a112V112FGtcTtc11AY.560.001605
ORF3a112V112FGtcTtc11AY.690.000187
ORF3a112V112FGtcTtc11AY.710.000475
ORF3a112V112FGtcTtc11AY.75.10.00018
ORF3a112V112FGtcTtc11AY.850.000427
ORF3a112V112FGtcTtc11AY.960.002075
ORF3a112V112FGtcTtc11AY.970.001701
ORF3a112V112FGtcTtc11AY.99.10.001553
ORF3a112V112FGtcTtc11B.1.1.1890.001513
ORF3a112V112FGtcTtc11B.1.1.2840.000107
ORF3a112V112FGtcTtc11B.1.1.3180.000302
ORF3a112V112FGtcTtc11B.1.1.3540.004386
ORF3a112V112FGtcTtc11B.1.1.3750.011905
ORF3a112V112FGtcTtc11B.1.1.4320.001266
ORF3a112V112FGtcTtc11B.1.1.5170.006803
ORF3a112V112FGtcTtc11B.1.1.5230.001563
ORF3a112V112FGtcTtc11B.1.1.540.003021
ORF3a112V112FGtcTtc11B.1.1.570.011494
ORF3a112V112FGtcTtc11B.1.1.670.004566
ORF3a112V112FGtcTtc11B.1.1.980.018519
ORF3a112V112FGtcTtc11B.1.1260.001276
ORF3a112V112FGtcTtc11B.1.1460.004237
ORF3a112V112FGtcTtc11B.1.1570.002985
ORF3a112V112FGtcTtc11B.1.177.210.000076
ORF3a112V112FGtcTtc11B.1.177.350.000691
ORF3a112V112FGtcTtc11B.1.177.400.005155
ORF3a112V112FGtcTtc11B.1.177.520.001757
ORF3a112V112FGtcTtc11B.1.177.730.000566
ORF3a112V112FGtcTtc11B.1.177.820.000477
ORF3a112V112FGtcTtc11B.1.177.90.001332
ORF3a112V112FGtcTtc11B.1.1890.004292
ORF3a112V112FGtcTtc11B.1.2100.002132
ORF3a112V112FGtcTtc11B.1.2220.001692
ORF3a112V112FGtcTtc11B.1.2390.001221
ORF3a112V112FGtcTtc11B.1.2470.014925
ORF3a112V112FGtcTtc11B.1.258.30.001675
ORF3a112V112FGtcTtc11B.1.36.10.00114
ORF3a112V112FGtcTtc11B.1.36.160.001425
ORF3a112V112FGtcTtc11B.1.36.240.006173
ORF3a112V112FGtcTtc11B.1.36.360.000602
ORF3a112V112FGtcTtc11B.1.3620.001541
ORF3a112V112FGtcTtc11B.1.3670.000792
ORF3a112V112FGtcTtc11B.1.4030.003268
ORF3a112V112FGtcTtc11B.1.4160.001269
ORF3a112V112FGtcTtc11B.1.416.10.001563
ORF3a112V112FGtcTtc11B.1.4220.000812
ORF3a112V112FGtcTtc11B.1.4380.006536
ORF3a112V112FGtcTtc11B.1.5050.004386
ORF3a112V112FGtcTtc11B.1.5060.02381
ORF3a112V112FGtcTtc11B.1.5240.001406
ORF3a112V112FGtcTtc11B.1.5380.008065
ORF3a112V112FGtcTtc11B.1.5610.000397
ORF3a112V112FGtcTtc11B.1.5950.000261
ORF3a112V112FGtcTtc11B.1.5990.00365
ORF3a112V112FGtcTtc11B.1.6090.000479
ORF3a112V112FGtcTtc11B.1.780.008547
ORF3a112V112FGtcTtc11B.4.10.018868
ORF3a112V112FGtcTtc11B.60.00091
ORF3a112V112FGtcTtc11C.350.000774
ORF3a112V112FGtcTtc11C.360.000911
ORF3a112V112FGtcTtc11C.40.01
ORF3a112V112FGtcTtc11N.40.004255
ORF3a112V112FGtcTtc11P.1.100.000269
ORF3a112V112FGtcTtc11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.