CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 112 | V112F | nonsyn | Gtc | Ttc | 8390 | 8370 | 0.997616 | 25726-25728 | |
ORF3a | 112 | V112F | nonsyn | GtC | TtT | 8390 | 20 | 0.00238379 | 25726-25728 | |
ORF3a | 112 | V112V | syn | gtC | gtT | 6385 | 6129 | 0.959906 | 25726-25728 | |
ORF3a | 112 | V112V | syn | gtC | gtG | 6385 | 143 | 0.0223962 | 25726-25728 | |
ORF3a | 112 | V112V | syn | gtC | gtA | 6385 | 113 | 0.0176977 | 25726-25728 | |
ORF3a | 112 | V112A | nonsyn | gTc | gCc | 777 | 775 | 0.997426 | 25726-25728 | |
ORF3a | 112 | V112A | nonsyn | gTC | gCT | 777 | 2 | 0.002574 | 25726-25728 | |
ORF3a | 112 | V112L | nonsyn | Gtc | Ctc | 212 | 212 | 1 | 25726-25728 | |
ORF3a | 112 | V112I | nonsyn | Gtc | Atc | 210 | 209 | 0.995238 | 25726-25728 | |
ORF3a | 112 | V112I | nonsyn | GtC | AtT | 210 | 1 | 0.0047619 | 25726-25728 | |
ORF3a | 112 | V112del | del | GTC | --- | 101 | 101 | 1 | 25726-25728 | |
ORF3a | 112 | V112G | nonsyn | gTc | gGc | 82 | 81 | 0.987805 | 25726-25728 | |
ORF3a | 112 | V112G | nonsyn | gTC | gGT | 82 | 1 | 0.0121951 | 25726-25728 | |
ORF3a | 112 | V112del1 | del | Gtc | -tc | 5 | 4 | 0.8 | 25726-25728 | |
ORF3a | 112 | V112del1 | del | gtC | gt- | 5 | 1 | 0.2 | 25726-25728 | |
ORF3a | 112 | V112D | nonsyn | gTc | gAc | 4 | 4 | 1 | 25726-25728 | |
ORF3a | 112 | V112S | nonsyn | GTC | TCT | 4 | 2 | 0.5 | 25726-25728 | |
ORF3a | 112 | V112S | nonsyn | GTc | TCc | 4 | 2 | 0.5 | 25726-25728 | |
ORF3a | 112 | V112E | nonsyn | gTC | gAA | 2 | 2 | 1 | 25726-25728 | |
ORF3a | 112 | V112C | nonsyn | GTC | TGT | 2 | 1 | 0.5 | 25726-25728 | |
ORF3a | 112 | V112C | nonsyn | GTc | TGc | 2 | 1 | 0.5 | 25726-25728 | |
ORF3a | 112 | V112N | nonsyn | GTc | AAc | 1 | 1 | 1 | 25726-25728 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 112 | V112F | Gtc | Ttc | 8370 | 8390 | All | 0.001601 |
ORF3a | 112 | V112F | GtC | TtT | 20 | 8390 | All | 0.000004 |
ORF3a | 112 | V112V | gtC | gtT | 6129 | 6385 | All | 0.001172 |
ORF3a | 112 | V112V | gtC | gtG | 143 | 6385 | All | 0.000027 |
ORF3a | 112 | V112V | gtC | gtA | 113 | 6385 | All | 0.000022 |
ORF3a | 112 | V112F | Gtc | Ttc | 1386 | 1392 | AY.4 | 0.002157 |
ORF3a | 112 | V112F | GtC | TtT | 6 | 1392 | AY.4 | 0.000009 |
ORF3a | 112 | V112V | gtC | gtT | 1085 | 1148 | B.1.1.7 | 0.000971 |
ORF3a | 112 | V112V | gtC | gtA | 51 | 1148 | B.1.1.7 | 0.000046 |
ORF3a | 112 | V112V | gtC | gtG | 12 | 1148 | B.1.1.7 | 0.000011 |
ORF3a | 112 | V112F | Gtc | Ttc | 976 | 976 | AY.43 | 0.004324 |
ORF3a | 112 | V112A | gTc | gCc | 775 | 777 | All | 0.000148 |
ORF3a | 112 | V112A | gTC | gCT | 2 | 777 | All | 0 |
ORF3a | 112 | V112A | gTc | gCc | 682 | 682 | AY.3 | 0.006783 |
ORF3a | 112 | V112F | Gtc | Ttc | 631 | 635 | B.1.1.7 | 0.000565 |
ORF3a | 112 | V112F | GtC | TtT | 4 | 635 | B.1.1.7 | 0.000004 |
ORF3a | 112 | V112F | Gtc | Ttc | 602 | 602 | B.1.1.222 | 0.122807 |
ORF3a | 112 | V112V | gtC | gtT | 466 | 466 | AY.3 | 0.004635 |
ORF3a | 112 | V112F | Gtc | Ttc | 377 | 377 | B.1.617.2 | 0.00142 |
ORF3a | 112 | V112F | Gtc | Ttc | 361 | 361 | B.1.596 | 0.031457 |
ORF3a | 112 | V112V | gtC | gtT | 319 | 337 | B.1.2 | 0.002809 |
ORF3a | 112 | V112V | gtC | gtG | 17 | 337 | B.1.2 | 0.00015 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 337 | B.1.2 | 0.000009 |
ORF3a | 112 | V112V | gtC | gtT | 322 | 330 | AY.4 | 0.000501 |
ORF3a | 112 | V112V | gtC | gtG | 8 | 330 | AY.4 | 0.000012 |
ORF3a | 112 | V112F | Gtc | Ttc | 326 | 326 | B.1.241 | 0.26461 |
ORF3a | 112 | V112V | gtC | gtT | 302 | 302 | AY.3.1 | 0.025748 |
ORF3a | 112 | V112F | Gtc | Ttc | 293 | 293 | AY.119 | 0.010345 |
ORF3a | 112 | V112V | gtC | gtT | 287 | 287 | B.1.1.28 | 0.089325 |
ORF3a | 112 | V112V | gtC | gtT | 284 | 284 | AY.120 | 0.010559 |
ORF3a | 112 | V112F | Gtc | Ttc | 256 | 256 | B.1.177 | 0.003371 |
ORF3a | 112 | V112F | Gtc | Ttc | 236 | 236 | AY.25 | 0.001419 |
ORF3a | 112 | V112V | gtC | gtT | 228 | 232 | B.1.617.2 | 0.000859 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 232 | B.1.617.2 | 0.000008 |
ORF3a | 112 | V112V | gtC | gtA | 2 | 232 | B.1.617.2 | 0.000008 |
ORF3a | 112 | V112V | gtC | gtT | 215 | 219 | AY.44 | 0.001309 |
ORF3a | 112 | V112V | gtC | gtA | 4 | 219 | AY.44 | 0.000024 |
ORF3a | 112 | V112L | Gtc | Ctc | 212 | 212 | All | 0.000041 |
ORF3a | 112 | V112I | Gtc | Atc | 209 | 210 | All | 0.00004 |
ORF3a | 112 | V112I | GtC | AtT | 1 | 210 | All | 0 |
ORF3a | 112 | V112F | Gtc | Ttc | 194 | 194 | B.1 | 0.001777 |
ORF3a | 112 | V112F | Gtc | Ttc | 183 | 183 | P.1 | 0.002883 |
ORF3a | 112 | V112V | gtC | gtT | 178 | 180 | B.1.177 | 0.002344 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 180 | B.1.177 | 0.000013 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 180 | B.1.177 | 0.000013 |
ORF3a | 112 | V112V | gtC | gtT | 133 | 135 | AY.43 | 0.000589 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 135 | AY.43 | 0.000004 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 135 | AY.43 | 0.000004 |
ORF3a | 112 | V112F | Gtc | Ttc | 125 | 130 | AY.39 | 0.003089 |
ORF3a | 112 | V112F | GtC | TtT | 5 | 130 | AY.39 | 0.000124 |
ORF3a | 112 | V112V | gtC | gtT | 129 | 129 | B.1.1.243 | 0.526531 |
ORF3a | 112 | V112V | gtC | gtT | 125 | 128 | B.1 | 0.001145 |
ORF3a | 112 | V112V | gtC | gtA | 3 | 128 | B.1 | 0.000027 |
ORF3a | 112 | V112V | gtC | gtT | 125 | 127 | B.1.1 | 0.002268 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 127 | B.1.1 | 0.000036 |
ORF3a | 112 | V112V | gtC | gtT | 124 | 124 | AY.103 | 0.00077 |
ORF3a | 112 | V112F | Gtc | Ttc | 123 | 123 | B.1.480 | 0.30597 |
ORF3a | 112 | V112F | Gtc | Ttc | 109 | 109 | AY.103 | 0.000677 |
ORF3a | 112 | V112del | GTC | --- | 101 | 101 | All | 0.000019 |
ORF3a | 112 | V112F | Gtc | Ttc | 91 | 91 | Q.1 | 0.011496 |
ORF3a | 112 | V112V | gtC | gtT | 55 | 86 | AY.25 | 0.000331 |
ORF3a | 112 | V112V | gtC | gtG | 17 | 86 | AY.25 | 0.000102 |
ORF3a | 112 | V112V | gtC | gtA | 14 | 86 | AY.25 | 0.000084 |
ORF3a | 112 | V112F | Gtc | Ttc | 84 | 84 | AY.13 | 0.013522 |
ORF3a | 112 | V112F | Gtc | Ttc | 84 | 84 | B.1.351 | 0.002497 |
ORF3a | 112 | V112G | gTc | gGc | 81 | 82 | All | 0.000015 |
ORF3a | 112 | V112G | gTC | gGT | 1 | 82 | All | 0 |
ORF3a | 112 | V112F | Gtc | Ttc | 80 | 80 | AY.79 | 0.096852 |
ORF3a | 112 | V112F | Gtc | Ttc | 79 | 79 | AY.44 | 0.000481 |
ORF3a | 112 | V112F | Gtc | Ttc | 75 | 75 | AY.102 | 0.001989 |
ORF3a | 112 | V112F | Gtc | Ttc | 74 | 74 | B.1.2 | 0.000652 |
ORF3a | 112 | V112V | gtC | gtT | 69 | 69 | AY.42 | 0.002776 |
ORF3a | 112 | V112V | gtC | gtT | 62 | 64 | P.1 | 0.000977 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 64 | P.1 | 0.000032 |
ORF3a | 112 | V112F | Gtc | Ttc | 59 | 59 | AY.46.6 | 0.00426 |
ORF3a | 112 | V112F | Gtc | Ttc | 56 | 56 | AY.100 | 0.002576 |
ORF3a | 112 | V112F | Gtc | Ttc | 53 | 53 | AY.3 | 0.000527 |
ORF3a | 112 | V112F | Gtc | Ttc | 51 | 51 | AY.26 | 0.001444 |
ORF3a | 112 | V112V | gtC | gtT | 49 | 51 | B.1.36 | 0.007149 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 51 | B.1.36 | 0.000292 |
ORF3a | 112 | V112G | gTc | gGc | 50 | 50 | AY.4 | 0.000078 |
ORF3a | 112 | V112F | Gtc | Ttc | 50 | 50 | B.1.243 | 0.003479 |
ORF3a | 112 | V112V | gtC | gtT | 50 | 50 | B.1.369 | 0.014261 |
ORF3a | 112 | V112V | gtC | gtT | 49 | 49 | AY.113 | 0.006977 |
ORF3a | 112 | V112F | Gtc | Ttc | 49 | 49 | B.1.160 | 0.001528 |
ORF3a | 112 | V112V | gtC | gtT | 46 | 47 | B.1.621 | 0.004072 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 47 | B.1.621 | 0.000089 |
ORF3a | 112 | V112V | gtC | gtT | 45 | 45 | AY.26 | 0.001274 |
ORF3a | 112 | V112F | Gtc | Ttc | 44 | 44 | B.1.36 | 0.00642 |
ORF3a | 112 | V112F | Gtc | Ttc | 43 | 43 | AY.5 | 0.000888 |
ORF3a | 112 | V112F | Gtc | Ttc | 42 | 42 | B.1.1.519 | 0.001668 |
ORF3a | 112 | V112I | Gtc | Atc | 42 | 42 | B.1.621 | 0.003718 |
ORF3a | 112 | V112F | Gtc | Ttc | 39 | 40 | B.1.1 | 0.000707 |
ORF3a | 112 | V112F | GtC | TtT | 1 | 40 | B.1.1 | 0.000018 |
ORF3a | 112 | V112V | gtC | gtT | 39 | 39 | AY.75 | 0.002185 |
ORF3a | 112 | V112V | gtC | gtT | 39 | 39 | B.1.1.159 | 0.182243 |
ORF3a | 112 | V112F | Gtc | Ttc | 39 | 39 | B.1.240 | 0.008407 |
ORF3a | 112 | V112V | gtC | gtT | 37 | 38 | AY.119 | 0.001306 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 38 | AY.119 | 0.000035 |
ORF3a | 112 | V112L | Gtc | Ctc | 38 | 38 | AY.4 | 0.000059 |
ORF3a | 112 | V112F | Gtc | Ttc | 38 | 38 | B.1.409 | 0.029687 |
ORF3a | 112 | V112V | gtC | gtT | 37 | 37 | AA.3 | 1 |
ORF3a | 112 | V112F | Gtc | Ttc | 37 | 37 | B.1.438.1 | 0.003969 |
ORF3a | 112 | V112V | gtC | gtT | 37 | 37 | P.1.15 | 0.008597 |
ORF3a | 112 | V112V | gtC | gtG | 33 | 36 | AY.14 | 0.002904 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 36 | AY.14 | 0.000264 |
ORF3a | 112 | V112V | gtC | gtT | 35 | 36 | B.1.623 | 0.018777 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 36 | B.1.623 | 0.000536 |
ORF3a | 112 | V112F | Gtc | Ttc | 33 | 33 | AY.29 | 0.000521 |
ORF3a | 112 | V112V | gtC | gtT | 33 | 33 | B.1.1.280 | 0.101852 |
ORF3a | 112 | V112V | gtC | gtG | 30 | 31 | AY.53 | 0.008626 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 31 | AY.53 | 0.000288 |
ORF3a | 112 | V112F | Gtc | Ttc | 31 | 31 | B.1.429 | 0.000729 |
ORF3a | 112 | V112V | gtC | gtT | 31 | 31 | B.1.596 | 0.002701 |
ORF3a | 112 | V112V | gtC | gtT | 28 | 30 | AY.102 | 0.000742 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 30 | AY.102 | 0.000027 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 30 | AY.102 | 0.000027 |
ORF3a | 112 | V112V | gtC | gtT | 29 | 30 | AY.9.2 | 0.001065 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 30 | AY.9.2 | 0.000037 |
ORF3a | 112 | V112I | Gtc | Atc | 29 | 29 | B.1.258 | 0.00193 |
ORF3a | 112 | V112F | Gtc | Ttc | 27 | 27 | B.1.526 | 0.000635 |
ORF3a | 112 | V112V | gtC | gtT | 26 | 26 | AY.4.2 | 0.000564 |
ORF3a | 112 | V112F | Gtc | Ttc | 25 | 25 | AY.121 | 0.003383 |
ORF3a | 112 | V112F | Gtc | Ttc | 25 | 25 | AY.42 | 0.001006 |
ORF3a | 112 | V112L | Gtc | Ctc | 25 | 25 | B.1.1.7 | 0.000022 |
ORF3a | 112 | V112del | GTC | --- | 25 | 25 | B.1.1.7 | 0.000022 |
ORF3a | 112 | V112V | gtC | gtT | 23 | 24 | AY.61 | 0.00241 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 24 | AY.61 | 0.000105 |
ORF3a | 112 | V112V | gtC | gtT | 24 | 24 | B.1.177.8 | 0.018059 |
ORF3a | 112 | V112V | gtC | gtT | 24 | 24 | C.37 | 0.002786 |
ORF3a | 112 | V112V | gtC | gtT | 23 | 23 | AY.29 | 0.000363 |
ORF3a | 112 | V112V | gtC | gtT | 22 | 23 | AY.39 | 0.000544 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 23 | AY.39 | 0.000025 |
ORF3a | 112 | V112F | Gtc | Ttc | 23 | 23 | AY.9.2 | 0.000845 |
ORF3a | 112 | V112I | Gtc | Atc | 23 | 23 | B.1.320 | 0.028643 |
ORF3a | 112 | V112V | gtC | gtT | 22 | 22 | P.2 | 0.004106 |
ORF3a | 112 | V112F | Gtc | Ttc | 21 | 21 | AY.47 | 0.000653 |
ORF3a | 112 | V112F | Gtc | Ttc | 20 | 20 | AY.117 | 0.00169 |
ORF3a | 112 | V112V | gtC | gtT | 20 | 20 | AY.20 | 0.000777 |
ORF3a | 112 | V112F | Gtc | Ttc | 20 | 20 | AY.46.2 | 0.012706 |
ORF3a | 112 | V112V | gtC | gtT | 20 | 20 | B.1.1.253 | 0.050125 |
ORF3a | 112 | V112V | gtC | gtT | 20 | 20 | B.1.1.519 | 0.000794 |
ORF3a | 112 | V112F | Gtc | Ttc | 19 | 19 | AY.90 | 0.013005 |
ORF3a | 112 | V112V | gtC | gtT | 19 | 19 | B.1.177.53 | 0.045455 |
ORF3a | 112 | V112F | Gtc | Ttc | 18 | 18 | AY.33 | 0.001202 |
ORF3a | 112 | V112F | Gtc | Ttc | 18 | 18 | AY.98.1 | 0.000872 |
ORF3a | 112 | V112V | gtC | gtT | 18 | 18 | B.1.221 | 0.001279 |
ORF3a | 112 | V112L | Gtc | Ctc | 18 | 18 | B.1.617.2 | 0.000068 |
ORF3a | 112 | V112L | Gtc | Ctc | 18 | 18 | P.1.14 | 0.00086 |
ORF3a | 112 | V112F | Gtc | Ttc | 17 | 17 | AY.20 | 0.000661 |
ORF3a | 112 | V112F | Gtc | Ttc | 17 | 17 | AY.46 | 0.001769 |
ORF3a | 112 | V112F | Gtc | Ttc | 17 | 17 | B.1.258.17 | 0.001768 |
ORF3a | 112 | V112V | gtC | gtT | 16 | 17 | B.1.351 | 0.000476 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 17 | B.1.351 | 0.00003 |
ORF3a | 112 | V112V | gtC | gtA | 16 | 17 | B.1.470 | 0.022472 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 17 | B.1.470 | 0.001404 |
ORF3a | 112 | V112V | gtC | gtT | 16 | 17 | Q.8 | 0.002639 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 17 | Q.8 | 0.000165 |
ORF3a | 112 | V112I | Gtc | Atc | 16 | 16 | AY.103 | 0.000099 |
ORF3a | 112 | V112V | gtC | gtT | 16 | 16 | AY.111 | 0.00293 |
ORF3a | 112 | V112F | Gtc | Ttc | 16 | 16 | AY.4.2 | 0.000347 |
ORF3a | 112 | V112V | gtC | gtT | 15 | 16 | B.1.243 | 0.001044 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 16 | B.1.243 | 0.00007 |
ORF3a | 112 | V112F | Gtc | Ttc | 15 | 15 | AY.23 | 0.001046 |
ORF3a | 112 | V112V | gtC | gtT | 15 | 15 | AY.99.2 | 0.001382 |
ORF3a | 112 | V112A | gTc | gCc | 15 | 15 | B.1 | 0.000137 |
ORF3a | 112 | V112L | Gtc | Ctc | 15 | 15 | B.1.234 | 0.001979 |
ORF3a | 112 | V112F | Gtc | Ttc | 14 | 14 | AY.46.5 | 0.002778 |
ORF3a | 112 | V112V | gtC | gtT | 14 | 14 | AY.46.6 | 0.001011 |
ORF3a | 112 | V112F | Gtc | Ttc | 14 | 14 | B.1.177.10 | 0.012291 |
ORF3a | 112 | V112F | Gtc | Ttc | 14 | 14 | B.1.258 | 0.000932 |
ORF3a | 112 | V112F | Gtc | Ttc | 14 | 14 | B.4.8 | 1 |
ORF3a | 112 | V112V | gtC | gtT | 13 | 14 | R.1 | 0.00117 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 14 | R.1 | 0.00009 |
ORF3a | 112 | V112L | Gtc | Ctc | 13 | 13 | AY.25 | 0.000078 |
ORF3a | 112 | V112V | gtC | gtT | 13 | 13 | AY.80 | 0.014673 |
ORF3a | 112 | V112V | gtC | gtT | 13 | 13 | B.1.1.67 | 0.059361 |
ORF3a | 112 | V112I | Gtc | Atc | 13 | 13 | B.1.617.2 | 0.000049 |
ORF3a | 112 | V112F | Gtc | Ttc | 13 | 13 | C.37 | 0.001509 |
ORF3a | 112 | V112V | gtC | gtT | 12 | 12 | B.1.258.17 | 0.001248 |
ORF3a | 112 | V112V | gtC | gtT | 12 | 12 | B.1.526 | 0.000282 |
ORF3a | 112 | V112V | gtC | gtT | 12 | 12 | B.1.637 | 0.000877 |
ORF3a | 112 | V112F | Gtc | Ttc | 12 | 12 | P.1.17 | 0.001941 |
ORF3a | 112 | V112V | gtC | gtT | 12 | 12 | Q.4 | 0.005457 |
ORF3a | 112 | V112F | Gtc | Ttc | 11 | 11 | AY.101 | 0.005395 |
ORF3a | 112 | V112G | gTc | gGc | 11 | 11 | AY.118 | 0.000689 |
ORF3a | 112 | V112L | Gtc | Ctc | 11 | 11 | AY.43 | 0.000049 |
ORF3a | 112 | V112V | gtC | gtT | 11 | 11 | AY.47 | 0.000342 |
ORF3a | 112 | V112I | Gtc | Atc | 11 | 11 | B.1 | 0.000101 |
ORF3a | 112 | V112V | gtC | gtT | 11 | 11 | B.1.160 | 0.000343 |
ORF3a | 112 | V112F | Gtc | Ttc | 11 | 11 | B.1.258.2 | 0.04955 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 10 | AY.117 | 0.000507 |
ORF3a | 112 | V112V | gtC | gtA | 4 | 10 | AY.117 | 0.000338 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | AY.39.1 | 0.000396 |
ORF3a | 112 | V112A | gTc | gCc | 10 | 10 | AY.4 | 0.000016 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | AY.4.5 | 0.001075 |
ORF3a | 112 | V112F | Gtc | Ttc | 10 | 10 | AY.99.2 | 0.000922 |
ORF3a | 112 | V112A | gTc | gCc | 10 | 10 | B.1.1.7 | 0.000009 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | B.1.234 | 0.001319 |
ORF3a | 112 | V112L | Gtc | Ctc | 10 | 10 | B.1.239 | 0.01221 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | B.1.429 | 0.000235 |
ORF3a | 112 | V112F | Gtc | Ttc | 10 | 10 | B.1.471 | 0.027322 |
ORF3a | 112 | V112V | gtC | gtT | 10 | 10 | P.1.12 | 0.00484 |
ORF3a | 112 | V112F | Gtc | Ttc | 10 | 10 | P.1.14 | 0.000478 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | AU.2 | 0.021792 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | AY.118 | 0.000564 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | AY.98.1 | 0.000436 |
ORF3a | 112 | V112del | GTC | --- | 9 | 9 | B.1 | 0.000082 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | B.1.177.81 | 0.001704 |
ORF3a | 112 | V112V | gtC | gtT | 9 | 9 | B.1.258 | 0.000599 |
ORF3a | 112 | V112F | Gtc | Ttc | 9 | 9 | B.1.426 | 0.009082 |
ORF3a | 112 | V112V | gtC | gtT | 8 | 8 | AY.110 | 0.000902 |
ORF3a | 112 | V112L | Gtc | Ctc | 8 | 8 | AY.3 | 0.00008 |
ORF3a | 112 | V112F | Gtc | Ttc | 8 | 8 | AY.45 | 0.000973 |
ORF3a | 112 | V112V | gtC | gtT | 8 | 8 | B.1.1.216 | 0.007124 |
ORF3a | 112 | V112I | Gtc | Atc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF3a | 112 | V112F | Gtc | Ttc | 8 | 8 | B.1.177.86 | 0.001468 |
ORF3a | 112 | V112V | gtC | gtT | 8 | 8 | B.1.276 | 0.135593 |
ORF3a | 112 | V112I | Gtc | Atc | 8 | 8 | B.1.427 | 0.000404 |
ORF3a | 112 | V112F | Gtc | Ttc | 8 | 8 | B.1.597 | 0.037037 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.100 | 0.000322 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.116 | 0.002007 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.23 | 0.000488 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | AY.41 | 0.002058 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.5 | 0.000145 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | AY.54 | 0.000667 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.55 | 0.006422 |
ORF3a | 112 | V112V | gtC | gtT | 7 | 7 | AY.9.1 | 0.000586 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | AY.93 | 0.001912 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | AY.98 | 0.000553 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | B.1.1.214 | 0.000388 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | B.1.1.306 | 0.003069 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | B.1.427 | 0.000353 |
ORF3a | 112 | V112L | Gtc | Ctc | 7 | 7 | B.1.525 | 0.000792 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | B.1.621 | 0.00062 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | B.1.628 | 0.002467 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | D.2 | 0.000525 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | P.2 | 0.001306 |
ORF3a | 112 | V112F | Gtc | Ttc | 7 | 7 | W.1 | 0.06087 |
ORF3a | 112 | V112L | Gtc | Ctc | 6 | 6 | AY.103 | 0.000037 |
ORF3a | 112 | V112F | Gtc | Ttc | 6 | 6 | AY.106 | 0.002009 |
ORF3a | 112 | V112F | Gtc | Ttc | 6 | 6 | AY.120 | 0.000223 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.32 | 0.003195 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.33 | 0.000401 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.46 | 0.000624 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.73 | 0.003992 |
ORF3a | 112 | V112F | Gtc | Ttc | 6 | 6 | AY.73 | 0.003992 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | AY.85 | 0.002563 |
ORF3a | 112 | V112F | Gtc | Ttc | 6 | 6 | AY.88 | 0.005305 |
ORF3a | 112 | V112F | Gtc | Ttc | 6 | 6 | B.1.1.1 | 0.00196 |
ORF3a | 112 | V112G | gTc | gGc | 6 | 6 | B.1.177.32 | 0.008097 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | B.1.177.44 | 0.003114 |
ORF3a | 112 | V112F | Gtc | Ttc | 6 | 6 | B.1.545 | 0.086957 |
ORF3a | 112 | V112F | Gtc | Ttc | 6 | 6 | B.1.617.1 | 0.000774 |
ORF3a | 112 | V112F | Gtc | Ttc | 6 | 6 | B.27 | 0.092308 |
ORF3a | 112 | V112V | gtC | gtT | 6 | 6 | P.1.14 | 0.000287 |
ORF3a | 112 | V112del1 | Gtc | -tc | 4 | 5 | All | 0.000001 |
ORF3a | 112 | V112del1 | gtC | gt- | 1 | 5 | All | 0 |
ORF3a | 112 | V112L | Gtc | Ctc | 5 | 5 | AY.102 | 0.000133 |
ORF3a | 112 | V112F | Gtc | Ttc | 5 | 5 | AY.113 | 0.000712 |
ORF3a | 112 | V112A | gTc | gCc | 5 | 5 | AY.117 | 0.000423 |
ORF3a | 112 | V112A | gTc | gCc | 5 | 5 | AY.120.1 | 0.001605 |
ORF3a | 112 | V112I | Gtc | Atc | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 112 | V112A | gTc | gCc | 5 | 5 | AY.25 | 0.00003 |
ORF3a | 112 | V112A | gTc | gCc | 5 | 5 | AY.33 | 0.000334 |
ORF3a | 112 | V112F | Gtc | Ttc | 5 | 5 | AY.39.1 | 0.000198 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | AY.4.2.1 | 0.000745 |
ORF3a | 112 | V112del | GTC | --- | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | AY.45 | 0.000608 |
ORF3a | 112 | V112F | Gtc | Ttc | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 112 | V112I | Gtc | Atc | 5 | 5 | AY.6 | 0.000206 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 5 | AY.6 | 0.000165 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 5 | AY.6 | 0.000041 |
ORF3a | 112 | V112F | Gtc | Ttc | 5 | 5 | AY.62 | 0.002179 |
ORF3a | 112 | V112F | Gtc | Ttc | 5 | 5 | AY.7.1 | 0.000564 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | AY.75.1 | 0.000902 |
ORF3a | 112 | V112F | Gtc | Ttc | 5 | 5 | AY.84 | 0.002187 |
ORF3a | 112 | V112A | gTc | gCc | 5 | 5 | B.1.1 | 0.000091 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 5 | B.1.1.28 | 0.000934 |
ORF3a | 112 | V112F | GtC | TtT | 2 | 5 | B.1.1.28 | 0.000622 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | B.1.1.306 | 0.002192 |
ORF3a | 112 | V112I | Gtc | Atc | 5 | 5 | B.1.1.306 | 0.002192 |
ORF3a | 112 | V112F | Gtc | Ttc | 5 | 5 | B.1.1.317 | 0.002058 |
ORF3a | 112 | V112F | Gtc | Ttc | 5 | 5 | B.1.1.33 | 0.002104 |
ORF3a | 112 | V112F | Gtc | Ttc | 5 | 5 | B.1.1.348 | 0.003981 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | B.1.1.354 | 0.02193 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | B.1.1.372 | 0.003444 |
ORF3a | 112 | V112V | gtC | gtT | 5 | 5 | B.1.93 | 0.004669 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 5 | D.2 | 0.0003 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 5 | D.2 | 0.000075 |
ORF3a | 112 | V112F | GtC | TtT | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112V | gtC | gtA | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112S | GTc | TCc | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112A | gTC | gCT | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112A | gTc | gCc | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112S | GTC | TCT | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112V | gtC | gtT | 2 | 4 | 0.111111 | |
ORF3a | 112 | V112V | gtC | gtG | 3 | 4 | A.2.5 | 0.001497 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 4 | A.2.5 | 0.000499 |
ORF3a | 112 | V112D | gTc | gAc | 4 | 4 | All | 0.000001 |
ORF3a | 112 | V112S | GTC | TCT | 2 | 4 | All | 0 |
ORF3a | 112 | V112S | GTc | TCc | 2 | 4 | All | 0 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.1 | 0.001583 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.10 | 0.00212 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.107 | 0.001864 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.110 | 0.000451 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | AY.27 | 0.000259 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | AY.30 | 0.001583 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.32 | 0.00213 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.34 | 0.000388 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | AY.37 | 0.001264 |
ORF3a | 112 | V112del | GTC | --- | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 112 | V112I | Gtc | Atc | 4 | 4 | AY.44 | 0.000024 |
ORF3a | 112 | V112L | Gtc | Ctc | 4 | 4 | AY.44 | 0.000024 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.51 | 0.003636 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.57 | 0.002625 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.6 | 0.000165 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.74 | 0.000463 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.86 | 0.00332 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | AY.9 | 0.00027 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 4 | B | 0.000383 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 4 | B | 0.000128 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.1.116 | 0.25 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.1.158 | 0.04878 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 4 | B.1.1.214 | 0.000166 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 4 | B.1.1.214 | 0.000055 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | B.1.1.269 | 0.005413 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | B.1.128 | 0.002541 |
ORF3a | 112 | V112del | GTC | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.177.46 | 0.003673 |
ORF3a | 112 | V112I | Gtc | Atc | 4 | 4 | B.1.177.8 | 0.00301 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | B.1.232 | 0.002149 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | B.1.36.8 | 0.004 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.427 | 0.000202 |
ORF3a | 112 | V112I | Gtc | Atc | 4 | 4 | B.1.429 | 0.000094 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 112 | V112del | GTC | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.575 | 0.001214 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | B.1.625 | 0.009412 |
ORF3a | 112 | V112A | gTc | gCc | 4 | 4 | P.1 | 0.000063 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | P.1.12 | 0.001936 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | Q.8 | 0.00066 |
ORF3a | 112 | V112F | Gtc | Ttc | 4 | 4 | R.1 | 0.00036 |
ORF3a | 112 | V112V | gtC | gtT | 4 | 4 | Z.1 | 0.011561 |
ORF3a | 112 | V112G | gTc | gGc | 2 | 3 | 0.111111 | |
ORF3a | 112 | V112G | gTC | gGT | 1 | 3 | 0.055556 | |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.109 | 0.002219 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.116 | 0.00086 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.120.2 | 0.003856 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.19 | 0.003421 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.24 | 0.001293 |
ORF3a | 112 | V112del | GTC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 112 | V112G | gTc | gGc | 3 | 3 | AY.25 | 0.000018 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.3.1 | 0.000256 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.36 | 0.000445 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 112 | V112A | gTc | gCc | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 112 | V112A | gTc | gCc | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.46.4 | 0.000494 |
ORF3a | 112 | V112I | Gtc | Atc | 3 | 3 | AY.5 | 0.000062 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.5.4 | 0.00083 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.55 | 0.002752 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.58 | 0.002722 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.61 | 0.000314 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.62 | 0.001307 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.64 | 0.001786 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.65 | 0.001599 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 3 | AY.7 | 0.000392 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 3 | AY.7 | 0.000196 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 112 | V112L | Gtc | Ctc | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.94 | 0.001328 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.98 | 0.000237 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | AY.99.1 | 0.004658 |
ORF3a | 112 | V112I | Gtc | Atc | 2 | 3 | B.1.1 | 0.000036 |
ORF3a | 112 | V112I | GtC | AtT | 1 | 3 | B.1.1 | 0.000018 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.128 | 0.021277 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.153 | 0.003286 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.1.220 | 0.005576 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.316 | 0.002775 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.326 | 0.005282 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.1.370 | 0.037975 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.1.47 | 0.016043 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.1.70 | 0.001023 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.110.3 | 0.002155 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.177.87 | 0.002183 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.179 | 0.011278 |
ORF3a | 112 | V112V | gtC | gtG | 3 | 3 | B.1.189 | 0.012876 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.221.2 | 0.012048 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.243.1 | 0.066667 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.258.11 | 0.001189 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.311 | 0.000824 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.36.17 | 0.001482 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.36.17 | 0.001482 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.389 | 0.003006 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.416.1 | 0.004687 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.443 | 0.014019 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.474 | 0.005703 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | B.1.474 | 0.005703 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.525 | 0.000339 |
ORF3a | 112 | V112I | Gtc | Atc | 3 | 3 | B.1.526 | 0.000071 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.595 | 0.000783 |
ORF3a | 112 | V112A | gTc | gCc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 112 | V112del | GTC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF3a | 112 | V112del | GTC | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | B.1.78 | 0.025641 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | C.18 | 0.007772 |
ORF3a | 112 | V112del | GTC | --- | 3 | 3 | P.1 | 0.000047 |
ORF3a | 112 | V112del | GTC | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF3a | 112 | V112L | Gtc | Ctc | 3 | 3 | P.2 | 0.00056 |
ORF3a | 112 | V112F | Gtc | Ttc | 3 | 3 | P.4 | 0.011407 |
ORF3a | 112 | V112V | gtC | gtT | 3 | 3 | Q.1 | 0.000379 |
ORF3a | 112 | V112E | gTC | gAA | 2 | 2 | 0.111111 | |
ORF3a | 112 | V112D | gTc | gAc | 2 | 2 | 0.111111 | |
ORF3a | 112 | V112del | GTC | --- | 2 | 2 | 0.111111 | |
ORF3a | 112 | V112C | GTc | TGc | 1 | 2 | 0.055556 | |
ORF3a | 112 | V112C | GTC | TGT | 1 | 2 | 0.055556 | |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | A | 0.000774 |
ORF3a | 112 | V112E | gTC | gAA | 2 | 2 | All | 0 |
ORF3a | 112 | V112C | GTc | TGc | 1 | 2 | All | 0 |
ORF3a | 112 | V112C | GTC | TGT | 1 | 2 | All | 0 |
ORF3a | 112 | V112A | gTc | gCc | 2 | 2 | AY.103 | 0.000012 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.107 | 0.000932 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 112 | V112L | Gtc | Ctc | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 112 | V112V | gtC | gtG | 1 | 2 | AY.120.1 | 0.000321 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 2 | AY.120.1 | 0.000321 |
ORF3a | 112 | V112L | Gtc | Ctc | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.16.1 | 0.00094 |
ORF3a | 112 | V112L | Gtc | Ctc | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.22 | 0.004184 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.4.3 | 0.001684 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 112 | V112del1 | Gtc | -tc | 2 | 2 | AY.43 | 0.000009 |
ORF3a | 112 | V112del | GTC | --- | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.5.3 | 0.000675 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.67 | 0.000929 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 112 | V112L | Gtc | Ctc | 2 | 2 | AY.7.2 | 0.001119 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.7.2 | 0.001119 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.70 | 0.000417 |
ORF3a | 112 | V112L | Gtc | Ctc | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 112 | V112L | Gtc | Ctc | 2 | 2 | AY.80 | 0.002257 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.82 | 0.002714 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.91 | 0.001461 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | AY.93 | 0.000546 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.94 | 0.000885 |
ORF3a | 112 | V112A | gTc | gCc | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | AY.99 | 0.002099 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B | 0.000256 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.174 | 0.006757 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.1.216 | 0.001781 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.217 | 0.007273 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.1.219 | 0.01 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.1.263 | 0.003115 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.1.286 | 0.005797 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.1.305 | 0.007722 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.1.46 | 0.008734 |
ORF3a | 112 | V112I | Gtc | Atc | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.1.528 | 0.009615 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.111 | 0.00235 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.14 | 0.035088 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.169 | 0.029851 |
ORF3a | 112 | V112A | gTc | gCc | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.177.43 | 0.002954 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.177.6 | 0.001953 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.177.75 | 0.002081 |
ORF3a | 112 | V112L | Gtc | Ctc | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.311 | 0.000549 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.340 | 0.008584 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.346 | 0.002621 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.351.1 | 0.076923 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.36.22 | 0.002415 |
ORF3a | 112 | V112V | gtC | gtG | 2 | 2 | B.1.375 | 0.001639 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.396 | 0.001411 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.459 | 0.008163 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.497 | 0.00063 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.558 | 0.009132 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.561 | 0.000794 |
ORF3a | 112 | V112G | gTc | gGc | 2 | 2 | B.1.577 | 0.001375 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.582 | 0.000981 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | B.1.593 | 0.021739 |
ORF3a | 112 | V112G | gTc | gGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.1.620 | 0.001892 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | B.23 | 0.005848 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | C.37.1 | 0.005236 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | P.1.13 | 0.001797 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | P.1.17.1 | 0.00175 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | P.1.7 | 0.000639 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | P.6 | 0.006289 |
ORF3a | 112 | V112F | Gtc | Ttc | 2 | 2 | Q.2 | 0.001227 |
ORF3a | 112 | V112V | gtC | gtT | 2 | 2 | W.4 | 0.002703 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | A | 0.000387 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | A | 0.000387 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | A | 0.000387 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | A.2 | 0.000662 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | A.2.4 | 0.003367 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | A.21 | 0.00277 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | A.23.1 | 0.000704 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | A.5 | 0.001923 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 112 | V112N | GTc | AAc | 1 | 1 | All | 0 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AQ.2 | 0.111111 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AU.3 | 0.00211 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.103 | 0.000006 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.120.1 | 0.000321 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | AY.14 | 0.000088 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.23.1 | 0.000417 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 112 | V112G | gTc | gGc | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 112 | V112G | gTc | gGc | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.4.1 | 0.000737 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 112 | V112D | gTc | gAc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 112 | V112D | gTc | gAc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 112 | V112G | gTc | gGc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.83 | 0.001724 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.97 | 0.001701 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | AY.99.1 | 0.001553 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B | 0.000128 |
ORF3a | 112 | V112del1 | Gtc | -tc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 112 | V112N | GTc | AAc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.129 | 0.009174 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.152 | 0.04 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.16 | 0.055556 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 1 | B.1.1.331 | 0.011628 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | B.1.1.351 | 0.002793 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.354 | 0.004386 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.375 | 0.011905 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.406 | 0.006494 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.429 | 0.004608 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.453 | 0.008475 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.466 | 0.008696 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.517 | 0.006803 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.54 | 0.003021 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.57 | 0.011494 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.67 | 0.004566 |
ORF3a | 112 | V112G | gTc | gGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.1.98 | 0.018519 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.146 | 0.004237 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.160.32 | 0.004292 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.163 | 0.02439 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.169 | 0.014925 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.177.35 | 0.000691 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.177.40 | 0.005155 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.177.52 | 0.001757 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | B.1.177.52 | 0.001757 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.177.9 | 0.001332 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.189 | 0.004292 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.222 | 0.001692 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.232 | 0.000537 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.247 | 0.014925 |
ORF3a | 112 | V112G | gTc | gGc | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 1 | B.1.258.21 | 0.007752 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | B.1.258.24 | 0.010753 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.258.3 | 0.001675 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF3a | 112 | V112V | gtC | gtA | 1 | 1 | B.1.301 | 0.005917 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.341 | 0.022727 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.36.1 | 0.00114 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | B.1.36.16 | 0.001425 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.36.16 | 0.001425 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.36.24 | 0.006173 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.36.25 | 0.002208 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.36.36 | 0.000602 |
ORF3a | 112 | V112del1 | Gtc | -tc | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.366 | 0.004878 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.403 | 0.003268 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.403 | 0.003268 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.416 | 0.001269 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | B.1.417 | 0.028571 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.432 | 0.011236 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.438 | 0.006536 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.44 | 0.008333 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.441 | 0.009615 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.498 | 0.020408 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.505 | 0.004386 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.506 | 0.02381 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.524 | 0.001406 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.550 | 0.013699 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | B.1.561 | 0.000397 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.574 | 0.002151 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 112 | V112L | Gtc | Ctc | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.599 | 0.00365 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.604 | 0.017241 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 112 | V112del1 | gtC | gt- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.1.633 | 0.041667 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.1.78 | 0.008547 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.3 | 0.000831 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.4.1 | 0.018868 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | B.40 | 0.000364 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | B.55 | 0.00295 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | B.6 | 0.00091 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | B.6 | 0.00091 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | C.35 | 0.000774 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | C.36 | 0.000911 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | C.37 | 0.000116 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | C.4 | 0.01 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | D.2 | 0.000075 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | N.4 | 0.004255 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 112 | V112I | Gtc | Atc | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 112 | V112A | gTc | gCc | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 112 | V112F | Gtc | Ttc | 1 | 1 | P.1.15 | 0.000232 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | P.1.16 | 0.000374 |
ORF3a | 112 | V112V | gtC | gtT | 1 | 1 | P.1.2 | 0.001156 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 112 | V112del | GTC | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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