CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 110 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a110A110VnonsyngCtgTt601560100.99916925720-25722

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a110A110VgCtgTt60106015All0.001149
ORF3a110A110VgCtgTt926926B.1.1.3330.996771
ORF3a110A110VgCtgTt794794B.1.1.70.000711
ORF3a110A110VgCtgTt661661AY.1030.004104
ORF3a110A110VgCtgTt565565AY.430.002503
ORF3a110A110VgCtgTt553553AY.40.000861
ORF3a110A110VgCtgTt304304B.1.1770.004003
ORF3a110A110VgCtgTt195195B.1.617.20.000734
ORF3a110A110VgCtgTt110110AY.260.003114
ORF3a110A110VgCtgTt105105P.10.001654
ORF3a110A110VgCtgTt102102AY.250.000614
ORF3a110A110VgCtgTt101101AY.230.007045
ORF3a110A110VgCtgTt9595AY.440.000578
ORF3a110A110VgCtgTt9292B.1.4290.002165
ORF3a110A110VgCtgTt8789B.1.10.001578
ORF3a110A110VgCtgTt7878B.10.000714
ORF3a110A110VgCtgTt6161B.1.20.000537
ORF3a110A110VgCtgTt5959B.1.6210.005223
ORF3a110A110VgCtgTt5757AY.30.000567
ORF3a110A110VgCtgTt5151AY.360.007559
ORF3a110A110VgCtgTt4646B.1.177.320.062078
ORF3a110A110VgCtgTt3939B.1.1600.001216
ORF3a110A110VgCtgTt3535AY.50.000723
ORF3a110A110VgCtgTt3232B.1.5950.008351
ORF3a110A110VgCtgTt3131B.1.1.3060.013591
ORF3a110A110VgCtgTt2626AY.9.20.000955
ORF3a110A110VgCtgTt2424AY.470.000747
ORF3a110A110VgCtgTt2323B.1.2210.001634
ORF3a110A110VgCtgTt2222B.1.1.2140.00122
ORF3a110A110VgCtgTt2222B.1.1.5190.000874
ORF3a110A110VgCtgTt2222B.1.36.20.236559
ORF3a110A110VgCtgTt1818B.1.3510.000535
ORF3a110A110VgCtgTt1717AY.1060.005693
ORF3a110A110VgCtgTt1515B.1.4270.000757
ORF3a110A110VgCtgTt1515C.160.015907
ORF3a110A110VgCtgTt1414AY.1020.000371
ORF3a110A110VgCtgTt1414AY.390.000346
ORF3a110A110VgCtgTt1414B.1.1.2200.026022
ORF3a110A110VgCtgTt1414B.1.36.180.005882
ORF3a110A110VgCtgTt1313AY.1190.000459
ORF3a110A110VgCtgTt1313AY.98.10.00063
ORF3a110A110VgCtgTt1212AY.290.000189
ORF3a110A110VgCtgTt1212B.1.1.4320.01519
ORF3a110A110VgCtgTt1212P.1.140.000574
ORF3a110A110VgCtgTt1111AY.1000.000506
ORF3a110A110VgCtgTt1111AY.340.001067
ORF3a110A110VgCtgTt1111B.1.5260.000259
ORF3a110A110VgCtgTt1010AY.1200.000372
ORF3a110A110VgCtgTt1010AY.46.20.006353
ORF3a110A110VgCtgTt99AY.200.00035
ORF3a110A110VgCtgTt99B.1.360.001313
ORF3a110A110VgCtgTt88AY.46.60.000578
ORF3a110A110VgCtgTt88AY.90.000541
ORF3a110A110VgCtgTt88B.1.5960.000697
ORF3a110A110VgCtgTt88Q.80.001319
ORF3a110A110VgCtgTt77AY.4.20.000152
ORF3a110A110VgCtgTt77AY.60.000288
ORF3a110A110VgCtgTt77AY.980.000553
ORF3a110A110VgCtgTt77B.1.1.1920.016166
ORF3a110A110VgCtgTt77B.1.438.10.000751
ORF3a110A110VgCtgTt77B.1.6280.002467
ORF3a110A110VgCtgTt77B.1.6370.000512
ORF3a110A110VgCtgTt360.166667
ORF3a110A110VgCtgTt66B.1.1.330.002525
ORF3a110A110VgCtgTt66B.1.3110.001647
ORF3a110A110VgCtgTt66B.1.5640.002555
ORF3a110A110VgCtgTt66B.1.5680.006667
ORF3a110A110VgCtgTt55AD.10.020576
ORF3a110A110VgCtgTt55AY.39.10.000198
ORF3a110A110VgCtgTt55AY.620.002179
ORF3a110A110VgCtgTt55B.1.1.280.001556
ORF3a110A110VgCtgTt55B.1.1.2840.000537
ORF3a110A110VgCtgTt55C.370.00058
ORF3a110A110VgCtgTt44AY.116.10.001246
ORF3a110A110VgCtgTt44AY.1180.000251
ORF3a110A110VgCtgTt44AY.330.000267
ORF3a110A110VgCtgTt44AY.420.000161
ORF3a110A110VgCtgTt44AY.610.000419
ORF3a110A110VgCtgTt44AY.680.001095
ORF3a110A110VgCtgTt44AY.740.000463
ORF3a110A110VgCtgTt44AY.860.00332
ORF3a110A110VgCtgTt44B0.000511
ORF3a110A110VgCtgTt44B.1.1.250.002274
ORF3a110A110VgCtgTt44B.1.1.3170.001647
ORF3a110A110VgCtgTt44B.1.1.3350.051948
ORF3a110A110VgCtgTt44B.1.1.3590.111111
ORF3a110A110VgCtgTt44B.1.177.230.012945
ORF3a110A110VgCtgTt44B.1.2340.000528
ORF3a110A110VgCtgTt44B.1.258.170.000416
ORF3a110A110VgCtgTt44B.1.3960.002823
ORF3a110A110VgCtgTt44B.1.4360.004115
ORF3a110A110VgCtgTt44B.1.5250.000453
ORF3a110A110VgCtgTt44P.20.000747
ORF3a110A110VgCtgTt33AY.1130.000427
ORF3a110A110VgCtgTt33AY.120.10.000963
ORF3a110A110VgCtgTt33AY.140.000264
ORF3a110A110VgCtgTt33AY.270.000194
ORF3a110A110VgCtgTt33AY.3.10.000256
ORF3a110A110VgCtgTt33AY.450.000365
ORF3a110A110VgCtgTt33AY.5.30.001012
ORF3a110A110VgCtgTt33AY.590.001589
ORF3a110A110VgCtgTt33B.1.1.5260.010638
ORF3a110A110VgCtgTt33B.1.160.260.007264
ORF3a110A110VgCtgTt33B.1.220.003953
ORF3a110A110VgCtgTt33B.1.2600.010033
ORF3a110A110VgCtgTt33B.1.3240.004815
ORF3a110A110VgCtgTt33B.1.36.120.028846
ORF3a110A110VgCtgTt33B.1.3690.000856
ORF3a110A110VgCtgTt33B.1.3810.023438
ORF3a110A110VgCtgTt33B.1.619.10.001924
ORF3a110A110VgCtgTt33B.1.6230.001609
ORF3a110A110VgCtgTt33D.20.000225
ORF3a110A110VgCtgTt33P.1.150.000697
ORF3a110A110VgCtgTt22AY.1160.000574
ORF3a110A110VgCtgTt22AY.130.000322
ORF3a110A110VgCtgTt22AY.300.000791
ORF3a110A110VgCtgTt22AY.460.000208
ORF3a110A110VgCtgTt22AY.46.40.000329
ORF3a110A110VgCtgTt22AY.480.00093
ORF3a110A110VgCtgTt22AY.540.000191
ORF3a110A110VgCtgTt22AY.570.001312
ORF3a110A110VgCtgTt22AY.580.001815
ORF3a110A110VgCtgTt22AY.650.001066
ORF3a110A110VgCtgTt22AY.700.000417
ORF3a110A110VgCtgTt22AY.750.000112
ORF3a110A110VgCtgTt22AY.760.009662
ORF3a110A110VgCtgTt22B.1.1.620.054054
ORF3a110A110VgCtgTt22B.1.1110.00235
ORF3a110A110VgCtgTt22B.1.1260.002551
ORF3a110A110VgCtgTt22B.1.177.190.002861
ORF3a110A110VgCtgTt22B.1.2580.000133
ORF3a110A110VgCtgTt22B.1.3250.013793
ORF3a110A110VgCtgTt22B.1.36.270.001527
ORF3a110A110VgCtgTt22B.1.36.290.001035
ORF3a110A110VgCtgTt22B.1.36.70.008
ORF3a110A110VgCtgTt22B.1.466.20.000782
ORF3a110A110VgCtgTt22B.1.4700.002809
ORF3a110A110VgCtgTt22B.1.5750.000607
ORF3a110A110VgCtgTt22B.1.5760.001813
ORF3a110A110VgCtgTt22B.1.6090.000959
ORF3a110A110VgCtgTt22B.1.617.10.000258
ORF3a110A110VgCtgTt22C.1.20.008511
ORF3a110A110VgCtgTt22P.1.20.002312
ORF3a110A110VgCtgTt22Q.40.00091
ORF3a110A110VgCtgTt11A0.000387
ORF3a110A110VgCtgTt11A.250.018182
ORF3a110A110VgCtgTt11A.290.005319
ORF3a110A110VgCtgTt11AH.30.003802
ORF3a110A110VgCtgTt11AN.10.02
ORF3a110A110VgCtgTt11AY.100.00053
ORF3a110A110VgCtgTt11AY.1090.00074
ORF3a110A110VgCtgTt11AY.1100.000113
ORF3a110A110VgCtgTt11AY.1170.000085
ORF3a110A110VgCtgTt11AY.240.000431
ORF3a110A110VgCtgTt11AY.29.10.000221
ORF3a110A110VgCtgTt11AY.34.10.00051
ORF3a110A110VgCtgTt11AY.380.000499
ORF3a110A110VgCtgTt11AY.46.30.000934
ORF3a110A110VgCtgTt11AY.46.50.000198
ORF3a110A110VgCtgTt11AY.490.003195
ORF3a110A110VgCtgTt11AY.550.000917
ORF3a110A110VgCtgTt11AY.640.000595
ORF3a110A110VgCtgTt11AY.660.00107
ORF3a110A110VgCtgTt11AY.670.000464
ORF3a110A110VgCtgTt11AY.7.20.000559
ORF3a110A110VgCtgTt11AY.920.000287
ORF3a110A110VgCtgTt11B.1.1.10.000327
ORF3a110A110VgCtgTt11B.1.1.1330.008475
ORF3a110A110VgCtgTt11B.1.1.1340.011364
ORF3a110A110VgCtgTt11B.1.1.1860.003436
ORF3a110A110VgCtgTt11B.1.1.2100.005714
ORF3a110A110VgCtgTt11B.1.1.2160.00089
ORF3a110A110VgCtgTt11B.1.1.2220.000204
ORF3a110A110VgCtgTt11B.1.1.2240.014286
ORF3a110A110VgCtgTt11B.1.1.2410.00207
ORF3a110A110VgCtgTt11B.1.1.2540.011236
ORF3a110A110VgCtgTt11B.1.1.2770.000759
ORF3a110A110VgCtgTt11B.1.1.2910.000742
ORF3a110A110VgCtgTt11B.1.1.2970.002237
ORF3a110A110VgCtgTt11B.1.1.3110.000358
ORF3a110A110VgCtgTt11B.1.1.3180.000302
ORF3a110A110VgCtgTt11B.1.1.3440.010753
ORF3a110A110VgCtgTt11B.1.1.370.000193
ORF3a110A110VgCtgTt11B.1.1.4090.002833
ORF3a110A110VgCtgTt11B.1.1.4340.000349
ORF3a110A110VgCtgTt11B.1.1.630.000386
ORF3a110A110VgCtgTt11B.1.1460.004237
ORF3a110A110VgCtgTt11B.1.1700.00431
ORF3a110A110VgCtgTt11B.1.177.350.000691
ORF3a110A110VgCtgTt11B.1.177.430.001477
ORF3a110A110VgCtgTt11B.1.177.50.001242
ORF3a110A110VgCtgTt11B.1.177.520.001757
ORF3a110A110VgCtgTt11B.1.177.730.000566
ORF3a110A110VgCtgTt11B.1.177.750.001041
ORF3a110A110VgCtgTt11B.1.177.790.002342
ORF3a110A110VgCtgTt11B.1.177.810.000189
ORF3a110A110VgCtgTt11B.1.1890.004292
ORF3a110A110VgCtgTt11B.1.2390.001221
ORF3a110A110VgCtgTt11B.1.2400.000216
ORF3a110A110VgCtgTt11B.1.2410.000812
ORF3a110A110VgCtgTt11B.1.2430.00007
ORF3a110A110VgCtgTt11B.1.2450.03125
ORF3a110A110VgCtgTt11B.1.2640.012346
ORF3a110A110VgCtgTt11B.1.3190.003049
ORF3a110A110VgCtgTt11B.1.3200.001245
ORF3a110A110VgCtgTt11B.1.351.30.000876
ORF3a110A110VgCtgTt11B.1.351.50.0006
ORF3a110A110VgCtgTt11B.1.36.160.001425
ORF3a110A110VgCtgTt11B.1.36.170.000494
ORF3a110A110VgCtgTt11B.1.36.250.002208
ORF3a110A110VgCtgTt11B.1.36.260.002857
ORF3a110A110VgCtgTt11B.1.36.80.001
ORF3a110A110VgCtgTt11B.1.3610.001289
ORF3a110A110VgCtgTt11B.1.3930.028571
ORF3a110A110VgCtgTt11B.1.4040.001302
ORF3a110A110VgCtgTt11B.1.4090.000781
ORF3a110A110VgCtgTt11B.1.4280.00102
ORF3a110A110VgCtgTt11B.1.4330.003195
ORF3a110A110VgCtgTt11B.1.4680.005714
ORF3a110A110VgCtgTt11B.1.5160.001957
ORF3a110A110VgCtgTt11B.1.5170.000427
ORF3a110A110VgCtgTt11B.1.5210.004975
ORF3a110A110VgCtgTt11B.1.5410.004425
ORF3a110A110VgCtgTt11B.1.5650.00081
ORF3a110A110VgCtgTt11B.1.575.10.002439
ORF3a110A110VgCtgTt11B.1.5770.000687
ORF3a110A110VgCtgTt11B.1.5990.00365
ORF3a110A110VgCtgTt11B.1.6190.000871
ORF3a110A110VgCtgTt11B.1.6200.000946
ORF3a110A110VgCtgTt11B.1.621.10.000506
ORF3a110A110VgCtgTt11B.1.930.000934
ORF3a110A110VgCtgTt11B.30.000831
ORF3a110A110VgCtgTt11B.6.60.000889
ORF3a110A110VgCtgTt11C.360.000911
ORF3a110A110VgCtgTt11K.20.04
ORF3a110A110VgCtgTt11P.1.100.000269
ORF3a110A110VgCtgTt11P.1.17.10.000875
ORF3a110A110VgCtgTt11Q.20.000613
ORF3a110A110VgCtgTt11Q.30.000145
ORF3a110A110VgCtgTt11R.10.00009
ORF3a110A110VgCtgTt11V.20.032258
ORF3a110A110VgCtgTt11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.