CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 109

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a109Y109CnonsyntAttGt265526530.99924725717-25719
ORF3a109Y109CnonsyntATtGC265520.00075329625717-25719
ORF3a109Y109SnonsyntAttCt426426125717-25719
ORF3a109Y109deldelTAT---368368125717-25719
ORF3a109Y109YsyntaTtaC318318125717-25719
ORF3a109Y109FnonsyntAttTt2852810.98596525717-25719
ORF3a109Y109FnonsyntATtTC28540.014035125717-25719
ORF3a109Y109HnonsynTatCat1941930.99484525717-25719
ORF3a109Y109HnonsynTaTCaC19410.0051546425717-25719
ORF3a109Y109del2delTAt--t1270.58333325717-25719
ORF3a109Y109del2deltATt--1250.41666725717-25719
ORF3a109Y109NnonsynTatAat1190.81818225717-25719
ORF3a109Y109NnonsynTaTAaC1120.18181825717-25719
ORF3a109Y109DnonsynTatGat1080.825717-25719
ORF3a109Y109DnonsynTaTGaC1020.225717-25719
ORF3a109Y109del1deltAtt-t850.62525717-25719
ORF3a109Y109del1delTat-at820.2525717-25719
ORF3a109Y109del1deltaTta-810.12525717-25719
ORF3a109Y109XnonsyntaTtaA650.83333325717-25719
ORF3a109Y109XnonsyntaTtaG610.16666725717-25719
ORF3a109Y109LnonsynTATCTG510.225717-25719
ORF3a109Y109LnonsyntATtTA510.225717-25719
ORF3a109Y109LnonsynTATCTC510.225717-25719
ORF3a109Y109LnonsynTAtCTt510.225717-25719
ORF3a109Y109LnonsyntATtTG510.225717-25719
ORF3a109Y109VnonsynTAtGTt420.525717-25719
ORF3a109Y109VnonsynTATGTC420.525717-25719
ORF3a109Y109RnonsynTATCGA11125717-25719
ORF3a109Y109InonsynTAtATt11125717-25719
ORF3a109Y109MnonsynTATATG11125717-25719
ORF3a109Y109KnonsynTaTAaG11125717-25719

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a109Y109CtAttGt26532655All0.000507
ORF3a109Y109CtATtGC22655All0
ORF3a109Y109CtAttGt19351935B.1.2790.993837
ORF3a109Y109StAttCt426426All0.000081
ORF3a109Y109StAttCt401401AY.250.002412
ORF3a109Y109delTAT---368368All0.00007
ORF3a109Y109YtaTtaC318318All0.000061
ORF3a109Y109FtAttTt281285All0.000054
ORF3a109Y109FtATtTC4285All0.000001
ORF3a109Y109HTatCat193194All0.000037
ORF3a109Y109HTaTCaC1194All0
ORF3a109Y109CtAttGt143143B.1.1.70.000128
ORF3a109Y109FtAttTt141141AY.440.000858
ORF3a109Y109CtAttGt121121AY.98.10.00586
ORF3a109Y109delTAT---9292B.1.3510.002735
ORF3a109Y109FtAttTt8383AY.330.005543
ORF3a109Y109YtaTtaC8383AY.40.000129
ORF3a109Y109YtaTtaC7777B.1.1.70.000069
ORF3a109Y109CtAttGt7272AY.5.40.019923
ORF3a109Y109CtAttGt5252B.1.1.4671
ORF3a109Y109delTAT---4444B.1.1.70.000039
ORF3a109Y109delTAT---4242AY.1030.000261
ORF3a109Y109HTatCat3939AY.1030.000242
ORF3a109Y109CtAttGt3838AY.1030.000236
ORF3a109Y109CtAttGt3536AY.40.000054
ORF3a109Y109CtATtGC136AY.40.000002
ORF3a109Y109HTatCat3434B.1.2430.002366
ORF3a109Y109HTatCat3030B.1.1.70.000027
ORF3a109Y109CtAttGt2828AZ.40.09396
ORF3a109Y109CtAttGt2525B.1.617.20.000094
ORF3a109Y109CtAttGt2323AY.1020.00061
ORF3a109Y109YtaTtaC2323B.1.2580.001531
ORF3a109Y109CtAttGt2323C.370.002669
ORF3a109Y109delTAT---2121AY.40.000033
ORF3a109Y109delTAT---1515AY.430.000066
ORF3a109Y109YtaTtaC1515B.1.617.20.000056
ORF3a109Y109delTAT---1414AY.300.00554
ORF3a109Y109YtaTtaC1414AY.390.000346
ORF3a109Y109YtaTtaC1414AY.430.000062
ORF3a109Y109HTatCat1313AY.440.000079
ORF3a109Y109del2TAt--t712All0.000001
ORF3a109Y109del2tATt--512All0.000001
ORF3a109Y109HTatCat1212AY.46.60.000866
ORF3a109Y109CtAttGt1212B.1.1770.000158
ORF3a109Y109FtAttTt1212B.1.617.20.000045
ORF3a109Y109NTatAat911All0.000002
ORF3a109Y109NTaTAaC211All0
ORF3a109Y109delTAT---1111B.10.000101
ORF3a109Y109DTatGat810All0.000002
ORF3a109Y109DTaTGaC210All0
ORF3a109Y109CtAttGt1010B0.001278
ORF3a109Y109CtAttGt1010B.1.20.000088
ORF3a109Y109CtAttGt99AY.30.00009
ORF3a109Y109CtAttGt99AY.440.000055
ORF3a109Y109delTAT---99AY.670.004178
ORF3a109Y109CtAttGt99B.10.000082
ORF3a109Y109delTAT---99B.1.617.20.000034
ORF3a109Y109del1tAtt-t58All0.000001
ORF3a109Y109del1Tat-at28All0
ORF3a109Y109del1taTta-18All0
ORF3a109Y109HTatCat88AY.250.000048
ORF3a109Y109YtaTtaC88AY.290.000126
ORF3a109Y109HTatCat88AY.40.000012
ORF3a109Y109HTatCat88P.10.000126
ORF3a109Y109FtAttTt77AY.340.000679
ORF3a109Y109YtaTtaC77B.1.10.000127
ORF3a109Y109YtaTtaC77B.1.1770.000092
ORF3a109Y109FtAttTt460.222222
ORF3a109Y109FtATtTC260.111111
ORF3a109Y109XtaTtaA56All0.000001
ORF3a109Y109XtaTtaG16All0
ORF3a109Y109StAttCt66AY.390.000148
ORF3a109Y109delTAT---66B.1.1770.000079
ORF3a109Y109delTAT---66B.1.2580.000399
ORF3a109Y109YtaTtaC550.277778
ORF3a109Y109LTATCTG15All0
ORF3a109Y109LtATtTA15All0
ORF3a109Y109LTATCTC15All0
ORF3a109Y109LTAtCTt15All0
ORF3a109Y109LtATtTG15All0
ORF3a109Y109CtAttGt55AY.140.00044
ORF3a109Y109delTAT---55AY.250.00003
ORF3a109Y109CtAttGt55AY.270.000324
ORF3a109Y109delTAT---55AY.390.000124
ORF3a109Y109FtAttTt55AY.4.50.000537
ORF3a109Y109CtAttGt55AY.430.000022
ORF3a109Y109delTAT---55AY.440.00003
ORF3a109Y109StAttCt55B.1.10.000091
ORF3a109Y109CtAttGt55B.1.10.000091
ORF3a109Y109FtAttTt45B.1.10.000073
ORF3a109Y109FtATtTC15B.1.10.000018
ORF3a109Y109YtaTtaC55B.1.1.280.001556
ORF3a109Y109DTatGat55B.1.1.70.000004
ORF3a109Y109delTAT---55D.20.000375
ORF3a109Y109NTatAat240.111111
ORF3a109Y109NTaTAaC240.111111
ORF3a109Y109CtAttGt44AE.50.074074
ORF3a109Y109VTAtGTt24All0
ORF3a109Y109VTATGTC24All0
ORF3a109Y109CtAttGt44AY.1000.000184
ORF3a109Y109FtAttTt44AY.1020.000106
ORF3a109Y109YtaTtaC44AY.1130.00057
ORF3a109Y109CtAttGt44AY.250.000024
ORF3a109Y109del2tATt--34AY.40.000005
ORF3a109Y109del2TAt--t14AY.40.000002
ORF3a109Y109CtAttGt44B.1.1.2140.000222
ORF3a109Y109YtaTtaC44B.1.1.3720.002755
ORF3a109Y109HTatCat44B.1.1770.000053
ORF3a109Y109delTAT---44B.1.5250.000453
ORF3a109Y109delTAT---44B.1.6210.000354
ORF3a109Y109CtAttGt44P.1.160.001496
ORF3a109Y109CtAttGt33AY.1190.000106
ORF3a109Y109StAttCt33AY.230.000209
ORF3a109Y109YtaTtaC33AY.250.000018
ORF3a109Y109YtaTtaC33AY.30.00003
ORF3a109Y109delTAT---33AY.30.00003
ORF3a109Y109CtAttGt33AY.340.000291
ORF3a109Y109FtAttTt33AY.40.000005
ORF3a109Y109HTatCat33AY.4.20.000065
ORF3a109Y109NTatAat33AY.440.000018
ORF3a109Y109CtAttGt33AY.60.000123
ORF3a109Y109YtaTtaC33AY.90.000203
ORF3a109Y109YtaTtaC33B.10.000027
ORF3a109Y109HTatCat33B.1.1.3170.001235
ORF3a109Y109YtaTtaC33B.1.1.5190.000119
ORF3a109Y109del2TAt--t23B.1.1.70.000002
ORF3a109Y109del2tATt--13B.1.1.70.000001
ORF3a109Y109StAttCt33B.1.617.20.000011
ORF3a109Y109HTatCat33B.1.617.20.000011
ORF3a109Y109FtAttTt23B.1.910.004149
ORF3a109Y109FtATtTC13B.1.910.002075
ORF3a109Y109delTAT---33P.10.000047
ORF3a109Y109delTAT---33P.1.150.000697
ORF3a109Y109delTAT---33P.1.70.000958
ORF3a109Y109CtAttGt33Q.20.00184
ORF3a109Y109delTAT---220.111111
ORF3a109Y109HTaTCaC120.055556
ORF3a109Y109CtAttGt120.055556
ORF3a109Y109LTATCTC120.055556
ORF3a109Y109HTatCat120.055556
ORF3a109Y109LTAtCTt120.055556
ORF3a109Y109DTaTGaC120.055556
ORF3a109Y109DTatGat120.055556
ORF3a109Y109CtATtGC120.055556
ORF3a109Y109VTAtGTt120.055556
ORF3a109Y109VTATGTC120.055556
ORF3a109Y109delTAT---22AE.80.000978
ORF3a109Y109delTAT---22AY.1020.000053
ORF3a109Y109YtaTtaC22AY.1020.000053
ORF3a109Y109delTAT---22AY.1110.000366
ORF3a109Y109FtAttTt22AY.1200.000074
ORF3a109Y109CtAttGt22AY.1200.000074
ORF3a109Y109CtAttGt22AY.200.000078
ORF3a109Y109HTatCat22AY.200.000078
ORF3a109Y109delTAT---22AY.200.000078
ORF3a109Y109CtAttGt22AY.230.000139
ORF3a109Y109del2TAt--t22AY.250.000012
ORF3a109Y109CtAttGt22AY.390.000049
ORF3a109Y109HTatCat22AY.390.000049
ORF3a109Y109CtAttGt22AY.39.10.000079
ORF3a109Y109StAttCt22AY.40.000003
ORF3a109Y109delTAT---22AY.4.20.000043
ORF3a109Y109CtAttGt22AY.420.00008
ORF3a109Y109HTatCat22AY.430.000009
ORF3a109Y109del2tATt--12AY.430.000004
ORF3a109Y109del2TAt--t12AY.430.000004
ORF3a109Y109del1tAtt-t22AY.440.000012
ORF3a109Y109CtAttGt22AY.46.40.000329
ORF3a109Y109FtAttTt22AY.60.000082
ORF3a109Y109delTAT---22AY.620.000871
ORF3a109Y109CtAttGt22AY.750.000112
ORF3a109Y109CtAttGt22AY.850.000854
ORF3a109Y109delTAT---22AY.860.00166
ORF3a109Y109YtaTtaC22AY.910.001461
ORF3a109Y109CtAttGt22AY.920.000575
ORF3a109Y109CtAttGt22AY.980.000158
ORF3a109Y109HTatCat22B.1.1.1890.003026
ORF3a109Y109YtaTtaC22B.1.1.1920.004619
ORF3a109Y109del1Tat-at12B.1.1.70.000001
ORF3a109Y109del1taTta-12B.1.1.70.000001
ORF3a109Y109CtAttGt22B.1.1.700.000682
ORF3a109Y109XtaTtaA22B.1.3510.000059
ORF3a109Y109YtaTtaC22B.1.36.290.001035
ORF3a109Y109delTAT---22B.1.5960.000174
ORF3a109Y109YtaTtaC22B.1.6210.000177
ORF3a109Y109VTATGTC12B.1.910.002075
ORF3a109Y109DTaTGaC12B.1.910.002075
ORF3a109Y109VTAtGTt12B.1.910.002075
ORF3a109Y109DTatGat12B.1.910.002075
ORF3a109Y109HTatCat22D.20.00015
ORF3a109Y109delTAT---11A0.000387
ORF3a109Y109KTaTAaG11All0
ORF3a109Y109RTATCGA11All0
ORF3a109Y109ITAtATt11All0
ORF3a109Y109MTATATG11All0
ORF3a109Y109delTAT---11AV.10.005051
ORF3a109Y109YtaTtaC11AY.10.000396
ORF3a109Y109delTAT---11AY.1000.000046
ORF3a109Y109YtaTtaC11AY.1000.000046
ORF3a109Y109HTatCat11AY.1020.000027
ORF3a109Y109del1tAtt-t11AY.1030.000006
ORF3a109Y109FtAttTt11AY.1030.000006
ORF3a109Y109delTAT---11AY.1080.001103
ORF3a109Y109FtAttTt11AY.1130.000142
ORF3a109Y109CtAttGt11AY.1130.000142
ORF3a109Y109StAttCt11AY.1140.000231
ORF3a109Y109delTAT---11AY.1180.000063
ORF3a109Y109StAttCt11AY.1190.000035
ORF3a109Y109YtaTtaC11AY.120.000316
ORF3a109Y109HTatCat11AY.1200.000037
ORF3a109Y109YtaTtaC11AY.200.000039
ORF3a109Y109YtaTtaC11AY.230.00007
ORF3a109Y109delTAT---11AY.230.00007
ORF3a109Y109YtaTtaC11AY.260.000028
ORF3a109Y109CtAttGt11AY.280.00189
ORF3a109Y109delTAT---11AY.290.000016
ORF3a109Y109HTatCat11AY.29.10.000221
ORF3a109Y109del2TAt--t11AY.30.00001
ORF3a109Y109FtAttTt11AY.30.00001
ORF3a109Y109delTAT---11AY.3.10.000085
ORF3a109Y109delTAT---11AY.330.000067
ORF3a109Y109delTAT---11AY.340.000097
ORF3a109Y109del1tAtt-t11AY.340.000097
ORF3a109Y109XtaTtaA11AY.370.000316
ORF3a109Y109delTAT---11AY.39.10.00004
ORF3a109Y109YtaTtaC11AY.4.20.000022
ORF3a109Y109delTAT---11AY.4.2.10.000149
ORF3a109Y109delTAT---11AY.4.50.000107
ORF3a109Y109YtaTtaC11AY.420.00004
ORF3a109Y109LtATtTA11AY.440.000006
ORF3a109Y109YtaTtaC11AY.440.000006
ORF3a109Y109StAttCt11AY.450.000122
ORF3a109Y109YtaTtaC11AY.450.000122
ORF3a109Y109YtaTtaC11AY.460.000104
ORF3a109Y109delTAT---11AY.46.20.000635
ORF3a109Y109YtaTtaC11AY.46.50.000198
ORF3a109Y109delTAT---11AY.470.000031
ORF3a109Y109CtAttGt11AY.470.000031
ORF3a109Y109delTAT---11AY.50.000021
ORF3a109Y109CtAttGt11AY.520.000814
ORF3a109Y109HTatCat11AY.60.000041
ORF3a109Y109delTAT---11AY.600.000938
ORF3a109Y109CtAttGt11AY.610.000105
ORF3a109Y109delTAT---11AY.680.000274
ORF3a109Y109YtaTtaC11AY.7.20.000559
ORF3a109Y109delTAT---11AY.720.001361
ORF3a109Y109delTAT---11AY.75.10.00018
ORF3a109Y109YtaTtaC11AY.760.004831
ORF3a109Y109CtAttGt11AY.9.10.000084
ORF3a109Y109StAttCt11AY.9.20.000037
ORF3a109Y109HTatCat11AY.9.20.000037
ORF3a109Y109CtAttGt11AY.9.20.000037
ORF3a109Y109StAttCt11AY.910.00073
ORF3a109Y109delTAT---11AY.910.00073
ORF3a109Y109HTatCat11AY.98.10.000048
ORF3a109Y109delTAT---11B0.000128
ORF3a109Y109HTatCat11B.10.000009
ORF3a109Y109RTATCGA11B.10.000009
ORF3a109Y109FtAttTt11B.10.000009
ORF3a109Y109XtaTtaA11B.10.000009
ORF3a109Y109NTatAat11B.1.10.000018
ORF3a109Y109HTatCat11B.1.10.000018
ORF3a109Y109FtAttTt11B.1.1.100.001115
ORF3a109Y109HTatCat11B.1.1.1530.001095
ORF3a109Y109YtaTtaC11B.1.1.1770.019231
ORF3a109Y109FtAttTt11B.1.1.1940.00495
ORF3a109Y109delTAT---11B.1.1.3110.000358
ORF3a109Y109delTAT---11B.1.1.3150.008475
ORF3a109Y109StAttCt11B.1.1.330.000421
ORF3a109Y109CtAttGt11B.1.1.330.000421
ORF3a109Y109YtaTtaC11B.1.1.330.000421
ORF3a109Y109delTAT---11B.1.1.330.000421
ORF3a109Y109YtaTtaC11B.1.1.3480.000796
ORF3a109Y109delTAT---11B.1.1.4090.002833
ORF3a109Y109delTAT---11B.1.1.4200.001006
ORF3a109Y109HTatCat11B.1.1.4420.018519
ORF3a109Y109delTAT---11B.1.1.4640.001473
ORF3a109Y109CtAttGt11B.1.1.500.000679
ORF3a109Y109delTAT---11B.1.1.5190.00004
ORF3a109Y109FtAttTt11B.1.1.70.000001
ORF3a109Y109NTatAat11B.1.1.70.000001
ORF3a109Y109delTAT---11B.1.1400.018868
ORF3a109Y109LTATCTG11B.1.1570.002985
ORF3a109Y109YtaTtaC11B.1.1600.000031
ORF3a109Y109delTAT---11B.1.160.230.004831
ORF3a109Y109del1Tat-at11B.1.1770.000013
ORF3a109Y109XtaTtaA11B.1.177.180.00116
ORF3a109Y109HTatCat11B.1.177.330.001645
ORF3a109Y109HTatCat11B.1.177.600.000218
ORF3a109Y109delTAT---11B.1.177.620.001192
ORF3a109Y109delTAT---11B.1.20.000009
ORF3a109Y109FtAttTt11B.1.2210.000071
ORF3a109Y109delTAT---11B.1.2210.000071
ORF3a109Y109YtaTtaC11B.1.258.110.000396
ORF3a109Y109YtaTtaC11B.1.258.170.000104
ORF3a109Y109FtAttTt11B.1.2790.000514
ORF3a109Y109HTatCat11B.1.3110.000275
ORF3a109Y109delTAT---11B.1.360.000146
ORF3a109Y109CtAttGt11B.1.36.100.004785
ORF3a109Y109CtAttGt11B.1.36.360.000602
ORF3a109Y109DTatGat11B.1.36.360.000602
ORF3a109Y109CtAttGt11B.1.3750.00082
ORF3a109Y109CtAttGt11B.1.4110.003704
ORF3a109Y109delTAT---11B.1.416.10.001563
ORF3a109Y109FtAttTt11B.1.4170.028571
ORF3a109Y109CtAttGt11B.1.4270.00005
ORF3a109Y109YtaTtaC11B.1.4290.000024
ORF3a109Y109CtAttGt11B.1.4290.000024
ORF3a109Y109FtAttTt11B.1.4370.020833
ORF3a109Y109YtaTtaC11B.1.4590.004082
ORF3a109Y109YtaTtaC11B.1.5090.000866
ORF3a109Y109CtAttGt11B.1.5200.021739
ORF3a109Y109HTatCat11B.1.5250.000113
ORF3a109Y109NTatAat11B.1.5250.000113
ORF3a109Y109CtAttGt11B.1.5960.000087
ORF3a109Y109delTAT---11B.1.617.10.000129
ORF3a109Y109CtAttGt11B.1.617.10.000129
ORF3a109Y109del1tAtt-t11B.1.617.20.000004
ORF3a109Y109delTAT---11B.1.6380.052632
ORF3a109Y109XtaTtaG11B.1.910.002075
ORF3a109Y109KTaTAaG11B.1.910.002075
ORF3a109Y109MTATATG11B.1.910.002075
ORF3a109Y109ITAtATt11B.1.910.002075
ORF3a109Y109LtATtTG11B.1.910.002075
ORF3a109Y109NTatAat11B.1.910.002075
ORF3a109Y109YtaTtaC11B.1.910.002075
ORF3a109Y109FtAttTt11B.260.014706
ORF3a109Y109YtaTtaC11B.30.000831
ORF3a109Y109CtAttGt11B.4.10.018868
ORF3a109Y109delTAT---11B.550.00295
ORF3a109Y109HTatCat11C.350.000774
ORF3a109Y109HTatCat11C.370.000116
ORF3a109Y109CtAttGt11C.37.10.002618
ORF3a109Y109CtAttGt11D.20.000075
ORF3a109Y109HTatCat11P.1.120.000484
ORF3a109Y109YtaTtaC11P.1.140.000048
ORF3a109Y109YtaTtaC11P.1.170.000162
ORF3a109Y109CtAttGt11Q.30.000145
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