CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 108 | L108F | nonsyn | Ctt | Ttt | 10373 | 10372 | 0.999904 | 25714-25716 | |
ORF3a | 108 | L108F | nonsyn | CtT | TtC | 10373 | 1 | 0.0000964041 | 25714-25716 | |
ORF3a | 108 | L108del | del | CTT | --- | 472 | 472 | 1 | 25714-25716 | |
ORF3a | 108 | L108I | nonsyn | Ctt | Att | 226 | 224 | 0.99115 | 25714-25716 | |
ORF3a | 108 | L108I | nonsyn | CtT | AtC | 226 | 2 | 0.00884956 | 25714-25716 | |
ORF3a | 108 | L108L | syn | ctT | ctC | 204 | 181 | 0.887255 | 25714-25716 | |
ORF3a | 108 | L108L | syn | ctT | ctG | 204 | 10 | 0.0490196 | 25714-25716 | |
ORF3a | 108 | L108L | syn | ctT | ctA | 204 | 10 | 0.0490196 | 25714-25716 | |
ORF3a | 108 | L108L | syn | CtT | TtA | 204 | 2 | 0.00980392 | 25714-25716 | |
ORF3a | 108 | L108L | syn | CtT | TtG | 204 | 1 | 0.00490196 | 25714-25716 | |
ORF3a | 108 | L108P | nonsyn | cTt | cCt | 163 | 163 | 1 | 25714-25716 | |
ORF3a | 108 | L108H | nonsyn | cTt | cAt | 123 | 123 | 1 | 25714-25716 | |
ORF3a | 108 | L108V | nonsyn | Ctt | Gtt | 96 | 96 | 1 | 25714-25716 | |
ORF3a | 108 | L108del1 | del | cTt | c-t | 16 | 8 | 0.5 | 25714-25716 | |
ORF3a | 108 | L108del1 | del | Ctt | -tt | 16 | 8 | 0.5 | 25714-25716 | |
ORF3a | 108 | L108R | nonsyn | cTt | cGt | 11 | 11 | 1 | 25714-25716 | |
ORF3a | 108 | L108del2 | del | CTt | --t | 6 | 3 | 0.5 | 25714-25716 | |
ORF3a | 108 | L108del2 | del | cTT | c-- | 6 | 2 | 0.333333 | 25714-25716 | |
ORF3a | 108 | L108del2 | del | CTT | --N | 6 | 1 | 0.166667 | 25714-25716 | |
ORF3a | 108 | L108S | nonsyn | CTt | TCt | 5 | 3 | 0.6 | 25714-25716 | |
ORF3a | 108 | L108S | nonsyn | CTt | AGt | 5 | 2 | 0.4 | 25714-25716 | |
ORF3a | 108 | L108N | nonsyn | CTt | AAt | 1 | 1 | 1 | 25714-25716 | |
ORF3a | 108 | L108A | nonsyn | CTt | GCt | 1 | 1 | 1 | 25714-25716 | |
ORF3a | 108 | L108G | nonsyn | CTt | GGt | 1 | 1 | 1 | 25714-25716 | |
ORF3a | 108 | L108D | nonsyn | CTt | GAt | 1 | 1 | 1 | 25714-25716 | |
ORF3a | 108 | L108Q | nonsyn | cTT | cAA | 1 | 1 | 1 | 25714-25716 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 108 | L108F | Ctt | Ttt | 10372 | 10373 | All | 0.001984 |
ORF3a | 108 | L108F | CtT | TtC | 1 | 10373 | All | 0 |
ORF3a | 108 | L108F | Ctt | Ttt | 1438 | 1438 | AY.25 | 0.008649 |
ORF3a | 108 | L108F | Ctt | Ttt | 1284 | 1284 | B.1.1.7 | 0.001149 |
ORF3a | 108 | L108F | Ctt | Ttt | 1261 | 1261 | B.1.409 | 0.985156 |
ORF3a | 108 | L108F | Ctt | Ttt | 879 | 879 | B.1.400 | 0.377091 |
ORF3a | 108 | L108F | Ctt | Ttt | 530 | 530 | AY.4 | 0.000825 |
ORF3a | 108 | L108del | CTT | --- | 472 | 472 | All | 0.00009 |
ORF3a | 108 | L108F | Ctt | Ttt | 349 | 349 | B.1.617.2 | 0.001314 |
ORF3a | 108 | L108F | Ctt | Ttt | 312 | 312 | B.1.1.369 | 0.139224 |
ORF3a | 108 | L108F | Ctt | Ttt | 259 | 259 | AY.26 | 0.007332 |
ORF3a | 108 | L108F | Ctt | Ttt | 234 | 234 | AY.44 | 0.001424 |
ORF3a | 108 | L108F | Ctt | Ttt | 233 | 233 | AY.5 | 0.004811 |
ORF3a | 108 | L108I | Ctt | Att | 224 | 226 | All | 0.000043 |
ORF3a | 108 | L108I | CtT | AtC | 2 | 226 | All | 0 |
ORF3a | 108 | L108F | Ctt | Ttt | 222 | 222 | AY.46.4 | 0.036519 |
ORF3a | 108 | L108L | ctT | ctC | 181 | 204 | All | 0.000035 |
ORF3a | 108 | L108L | ctT | ctA | 10 | 204 | All | 0.000002 |
ORF3a | 108 | L108L | ctT | ctG | 10 | 204 | All | 0.000002 |
ORF3a | 108 | L108L | CtT | TtA | 2 | 204 | All | 0 |
ORF3a | 108 | L108L | CtT | TtG | 1 | 204 | All | 0 |
ORF3a | 108 | L108F | Ctt | Ttt | 201 | 201 | AY.3 | 0.001999 |
ORF3a | 108 | L108F | Ctt | Ttt | 167 | 167 | B.1.177 | 0.002199 |
ORF3a | 108 | L108P | cTt | cCt | 163 | 163 | All | 0.000031 |
ORF3a | 108 | L108F | Ctt | Ttt | 146 | 146 | AY.33 | 0.00975 |
ORF3a | 108 | L108F | Ctt | Ttt | 146 | 146 | B.1 | 0.001337 |
ORF3a | 108 | L108F | Ctt | Ttt | 141 | 141 | AY.43 | 0.000625 |
ORF3a | 108 | L108F | Ctt | Ttt | 139 | 139 | B.1.2 | 0.001224 |
ORF3a | 108 | L108del | CTT | --- | 127 | 127 | B.1.1.7 | 0.000114 |
ORF3a | 108 | L108F | Ctt | Ttt | 125 | 125 | P.1 | 0.001969 |
ORF3a | 108 | L108H | cTt | cAt | 123 | 123 | All | 0.000024 |
ORF3a | 108 | L108F | Ctt | Ttt | 121 | 121 | B.1.1 | 0.002195 |
ORF3a | 108 | L108F | Ctt | Ttt | 116 | 116 | AY.103 | 0.00072 |
ORF3a | 108 | L108H | cTt | cAt | 111 | 111 | B.1.1.7 | 0.000099 |
ORF3a | 108 | L108V | Ctt | Gtt | 96 | 96 | All | 0.000018 |
ORF3a | 108 | L108L | ctT | ctC | 88 | 88 | AY.3 | 0.000875 |
ORF3a | 108 | L108F | Ctt | Ttt | 75 | 75 | B.1.577 | 0.051546 |
ORF3a | 108 | L108F | Ctt | Ttt | 66 | 66 | B.1.429 | 0.001553 |
ORF3a | 108 | L108F | Ctt | Ttt | 63 | 63 | A.2.3 | 0.298578 |
ORF3a | 108 | L108F | Ctt | Ttt | 58 | 58 | AY.39 | 0.001433 |
ORF3a | 108 | L108del | CTT | --- | 53 | 53 | AY.4 | 0.000082 |
ORF3a | 108 | L108F | Ctt | Ttt | 53 | 53 | AY.9.1 | 0.004437 |
ORF3a | 108 | L108F | Ctt | Ttt | 53 | 53 | B.1.1.222 | 0.010812 |
ORF3a | 108 | L108P | cTt | cCt | 46 | 46 | Q.1 | 0.005811 |
ORF3a | 108 | L108F | Ctt | Ttt | 44 | 44 | AY.98.1 | 0.002131 |
ORF3a | 108 | L108I | Ctt | Att | 44 | 44 | B.1.177 | 0.000579 |
ORF3a | 108 | L108V | Ctt | Gtt | 43 | 43 | B.1.1.214 | 0.002385 |
ORF3a | 108 | L108F | Ctt | Ttt | 43 | 43 | B.1.243 | 0.002992 |
ORF3a | 108 | L108F | Ctt | Ttt | 42 | 42 | AY.102 | 0.001114 |
ORF3a | 108 | L108del | CTT | --- | 39 | 39 | AY.103 | 0.000242 |
ORF3a | 108 | L108F | Ctt | Ttt | 39 | 39 | B.1.1.519 | 0.001549 |
ORF3a | 108 | L108F | Ctt | Ttt | 37 | 37 | AY.120 | 0.001376 |
ORF3a | 108 | L108F | Ctt | Ttt | 33 | 33 | AY.100 | 0.001518 |
ORF3a | 108 | L108F | Ctt | Ttt | 32 | 32 | B.1.1.214 | 0.001775 |
ORF3a | 108 | L108F | Ctt | Ttt | 29 | 29 | AY.20 | 0.001127 |
ORF3a | 108 | L108F | Ctt | Ttt | 29 | 29 | B.1.525 | 0.003282 |
ORF3a | 108 | L108I | Ctt | Att | 28 | 28 | AY.43 | 0.000124 |
ORF3a | 108 | L108I | Ctt | Att | 27 | 27 | B.1.2 | 0.000238 |
ORF3a | 108 | L108I | Ctt | Att | 26 | 26 | AY.39 | 0.000642 |
ORF3a | 108 | L108F | Ctt | Ttt | 25 | 25 | AY.4.2 | 0.000542 |
ORF3a | 108 | L108F | Ctt | Ttt | 25 | 25 | B.1.427 | 0.001262 |
ORF3a | 108 | L108F | Ctt | Ttt | 24 | 24 | AY.65 | 0.012793 |
ORF3a | 108 | L108I | Ctt | Att | 24 | 24 | B.1.1.7 | 0.000021 |
ORF3a | 108 | L108F | Ctt | Ttt | 24 | 24 | B.1.36 | 0.003502 |
ORF3a | 108 | L108F | Ctt | Ttt | 24 | 24 | B.1.517 | 0.010248 |
ORF3a | 108 | L108I | Ctt | Att | 22 | 22 | AY.103 | 0.000137 |
ORF3a | 108 | L108F | Ctt | Ttt | 22 | 22 | AY.47 | 0.000684 |
ORF3a | 108 | L108F | Ctt | Ttt | 22 | 22 | R.1 | 0.00198 |
ORF3a | 108 | L108del | CTT | --- | 21 | 21 | AY.33 | 0.001402 |
ORF3a | 108 | L108F | Ctt | Ttt | 20 | 20 | AY.46 | 0.002082 |
ORF3a | 108 | L108del | CTT | --- | 20 | 20 | B.1.177 | 0.000263 |
ORF3a | 108 | L108F | Ctt | Ttt | 20 | 20 | P.1.14 | 0.000956 |
ORF3a | 108 | L108F | Ctt | Ttt | 19 | 19 | AY.42 | 0.000764 |
ORF3a | 108 | L108F | Ctt | Ttt | 19 | 19 | AY.61 | 0.001991 |
ORF3a | 108 | L108F | Ctt | Ttt | 19 | 19 | B.1.177.21 | 0.001453 |
ORF3a | 108 | L108F | Ctt | Ttt | 19 | 19 | B.1.438.1 | 0.002038 |
ORF3a | 108 | L108F | Ctt | Ttt | 19 | 19 | B.1.617.1 | 0.00245 |
ORF3a | 108 | L108F | Ctt | Ttt | 19 | 19 | C.37 | 0.002205 |
ORF3a | 108 | L108F | Ctt | Ttt | 19 | 19 | Q.1 | 0.0024 |
ORF3a | 108 | L108F | Ctt | Ttt | 18 | 18 | AY.4.5 | 0.001935 |
ORF3a | 108 | L108L | ctT | ctC | 14 | 18 | B.1.1.7 | 0.000013 |
ORF3a | 108 | L108L | ctT | ctG | 4 | 18 | B.1.1.7 | 0.000004 |
ORF3a | 108 | L108F | Ctt | Ttt | 18 | 18 | B.1.621 | 0.001593 |
ORF3a | 108 | L108F | Ctt | Ttt | 17 | 17 | AY.29 | 0.000268 |
ORF3a | 108 | L108F | Ctt | Ttt | 17 | 17 | AY.98 | 0.001343 |
ORF3a | 108 | L108F | Ctt | Ttt | 17 | 17 | B.1.1.318 | 0.00513 |
ORF3a | 108 | L108F | Ctt | Ttt | 17 | 17 | B.1.160 | 0.00053 |
ORF3a | 108 | L108F | Ctt | Ttt | 17 | 17 | B.1.575 | 0.005158 |
ORF3a | 108 | L108P | cTt | cCt | 17 | 17 | B.1.617.2 | 0.000064 |
ORF3a | 108 | L108del1 | cTt | c-t | 8 | 16 | All | 0.000002 |
ORF3a | 108 | L108del1 | Ctt | -tt | 8 | 16 | All | 0.000002 |
ORF3a | 108 | L108del | CTT | --- | 16 | 16 | AY.43 | 0.000071 |
ORF3a | 108 | L108F | Ctt | Ttt | 15 | 15 | AY.1 | 0.005936 |
ORF3a | 108 | L108del | CTT | --- | 15 | 15 | AY.25 | 0.00009 |
ORF3a | 108 | L108F | Ctt | Ttt | 15 | 15 | B.1.351 | 0.000446 |
ORF3a | 108 | L108F | Ctt | Ttt | 15 | 15 | B.1.596 | 0.001307 |
ORF3a | 108 | L108F | Ctt | Ttt | 14 | 14 | AY.118 | 0.000877 |
ORF3a | 108 | L108del | CTT | --- | 14 | 14 | AY.30 | 0.00554 |
ORF3a | 108 | L108L | ctT | ctC | 14 | 14 | AY.43 | 0.000062 |
ORF3a | 108 | L108F | Ctt | Ttt | 14 | 14 | B.1.258 | 0.000932 |
ORF3a | 108 | L108F | Ctt | Ttt | 13 | 13 | AY.119 | 0.000459 |
ORF3a | 108 | L108F | Ctt | Ttt | 13 | 13 | AY.7.1 | 0.001465 |
ORF3a | 108 | L108F | Ctt | Ttt | 13 | 13 | AY.99.2 | 0.001198 |
ORF3a | 108 | L108del | CTT | --- | 13 | 13 | B.1 | 0.000119 |
ORF3a | 108 | L108F | Ctt | Ttt | 12 | 12 | AY.106 | 0.004019 |
ORF3a | 108 | L108F | Ctt | Ttt | 12 | 12 | AY.117 | 0.001014 |
ORF3a | 108 | L108F | Ctt | Ttt | 12 | 12 | AY.45 | 0.00146 |
ORF3a | 108 | L108F | Ctt | Ttt | 12 | 12 | B.1.1.28 | 0.003735 |
ORF3a | 108 | L108F | Ctt | Ttt | 12 | 12 | B.1.258.3 | 0.020101 |
ORF3a | 108 | L108F | Ctt | Ttt | 12 | 12 | B.1.564.1 | 0.018927 |
ORF3a | 108 | L108F | Ctt | Ttt | 12 | 12 | P.1.7 | 0.003831 |
ORF3a | 108 | L108R | cTt | cGt | 11 | 11 | All | 0.000002 |
ORF3a | 108 | L108P | cTt | cCt | 11 | 11 | AY.4 | 0.000017 |
ORF3a | 108 | L108P | cTt | cCt | 11 | 11 | AY.43 | 0.000049 |
ORF3a | 108 | L108F | Ctt | Ttt | 11 | 11 | AY.46.5 | 0.002183 |
ORF3a | 108 | L108F | Ctt | Ttt | 11 | 11 | B.1.1.284 | 0.001181 |
ORF3a | 108 | L108F | Ctt | Ttt | 11 | 11 | B.1.1.311 | 0.00394 |
ORF3a | 108 | L108F | Ctt | Ttt | 11 | 11 | B.1.234 | 0.001451 |
ORF3a | 108 | L108F | Ctt | Ttt | 10 | 10 | AY.27 | 0.000647 |
ORF3a | 108 | L108F | Ctt | Ttt | 10 | 10 | AY.34 | 0.00097 |
ORF3a | 108 | L108F | Ctt | Ttt | 10 | 10 | AY.75 | 0.00056 |
ORF3a | 108 | L108F | Ctt | Ttt | 10 | 10 | B.1.280 | 0.071429 |
ORF3a | 108 | L108F | Ctt | Ttt | 10 | 10 | D.2 | 0.00075 |
ORF3a | 108 | L108P | cTt | cCt | 10 | 10 | P.1 | 0.000158 |
ORF3a | 108 | L108F | Ctt | Ttt | 9 | 9 | AY.12 | 0.002845 |
ORF3a | 108 | L108F | Ctt | Ttt | 9 | 9 | AY.23 | 0.000628 |
ORF3a | 108 | L108F | Ctt | Ttt | 9 | 9 | AY.30 | 0.003562 |
ORF3a | 108 | L108F | Ctt | Ttt | 9 | 9 | AY.32 | 0.004792 |
ORF3a | 108 | L108L | ctT | ctC | 8 | 9 | AY.4 | 0.000012 |
ORF3a | 108 | L108L | ctT | ctG | 1 | 9 | AY.4 | 0.000002 |
ORF3a | 108 | L108del | CTT | --- | 9 | 9 | AY.67 | 0.004178 |
ORF3a | 108 | L108F | Ctt | Ttt | 9 | 9 | B.1.1.525 | 0.04918 |
ORF3a | 108 | L108F | Ctt | Ttt | 9 | 9 | B.1.177.12 | 0.001365 |
ORF3a | 108 | L108del | CTT | --- | 9 | 9 | C.37 | 0.001045 |
ORF3a | 108 | L108L | CtT | TtA | 2 | 8 | 0.111111 | |
ORF3a | 108 | L108L | ctT | ctA | 2 | 8 | 0.111111 | |
ORF3a | 108 | L108L | ctT | ctC | 2 | 8 | 0.111111 | |
ORF3a | 108 | L108L | ctT | ctG | 1 | 8 | 0.055556 | |
ORF3a | 108 | L108L | CtT | TtG | 1 | 8 | 0.055556 | |
ORF3a | 108 | L108V | Ctt | Gtt | 8 | 8 | AY.4.2 | 0.000174 |
ORF3a | 108 | L108F | Ctt | Ttt | 8 | 8 | AY.94 | 0.003541 |
ORF3a | 108 | L108F | Ctt | Ttt | 8 | 8 | AY.95 | 0.006088 |
ORF3a | 108 | L108F | Ctt | Ttt | 8 | 8 | B.1.1.25 | 0.004548 |
ORF3a | 108 | L108P | cTt | cCt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF3a | 108 | L108V | Ctt | Gtt | 8 | 8 | B.1.160 | 0.00025 |
ORF3a | 108 | L108F | Ctt | Ttt | 8 | 8 | B.1.221 | 0.000568 |
ORF3a | 108 | L108F | Ctt | Ttt | 8 | 8 | B.1.336 | 0.019512 |
ORF3a | 108 | L108F | Ctt | Ttt | 8 | 8 | B.1.36.31 | 0.014011 |
ORF3a | 108 | L108F | Ctt | Ttt | 8 | 8 | B.1.411 | 0.02963 |
ORF3a | 108 | L108del | CTT | --- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF3a | 108 | L108F | Ctt | Ttt | 7 | 7 | AY.108 | 0.007718 |
ORF3a | 108 | L108F | Ctt | Ttt | 7 | 7 | AY.111 | 0.001282 |
ORF3a | 108 | L108del | CTT | --- | 7 | 7 | AY.29 | 0.00011 |
ORF3a | 108 | L108F | Ctt | Ttt | 7 | 7 | AY.54 | 0.000667 |
ORF3a | 108 | L108V | Ctt | Gtt | 7 | 7 | B.1.1 | 0.000127 |
ORF3a | 108 | L108F | Ctt | Ttt | 7 | 7 | B.1.1.265 | 0.022082 |
ORF3a | 108 | L108F | Ctt | Ttt | 7 | 7 | B.1.160.16 | 0.006506 |
ORF3a | 108 | L108F | Ctt | Ttt | 7 | 7 | B.1.177.16 | 0.004651 |
ORF3a | 108 | L108F | Ctt | Ttt | 7 | 7 | B.1.448 | 0.018373 |
ORF3a | 108 | L108F | Ctt | Ttt | 7 | 7 | P.1.1 | 0.002224 |
ORF3a | 108 | L108F | Ctt | Ttt | 7 | 7 | P.1.16 | 0.002619 |
ORF3a | 108 | L108del2 | CTt | --t | 3 | 6 | All | 0.000001 |
ORF3a | 108 | L108del2 | cTT | c-- | 2 | 6 | All | 0 |
ORF3a | 108 | L108del2 | CTT | --N | 1 | 6 | All | 0 |
ORF3a | 108 | L108V | Ctt | Gtt | 6 | 6 | AY.3 | 0.00006 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | AY.36 | 0.000889 |
ORF3a | 108 | L108del | CTT | --- | 6 | 6 | AY.39 | 0.000148 |
ORF3a | 108 | L108I | Ctt | Att | 6 | 6 | AY.45 | 0.00073 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | AY.5.3 | 0.002024 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | AY.59 | 0.003178 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | AY.6 | 0.000247 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | AY.9 | 0.000406 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | AY.9.2 | 0.00022 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B | 0.000767 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B.1.1.216 | 0.005343 |
ORF3a | 108 | L108L | ctT | ctC | 6 | 6 | B.1.1.306 | 0.00263 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B.1.1.317 | 0.00247 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B.1.1.33 | 0.002525 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B.1.1.37 | 0.001157 |
ORF3a | 108 | L108del | CTT | --- | 6 | 6 | B.1.2 | 0.000053 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B.1.258.17 | 0.000624 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B.1.258.23 | 0.142857 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B.1.396 | 0.004234 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B.1.474 | 0.011407 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | B.1.93 | 0.005602 |
ORF3a | 108 | L108F | Ctt | Ttt | 6 | 6 | P.1.17 | 0.000971 |
ORF3a | 108 | L108S | CTt | TCt | 3 | 5 | All | 0.000001 |
ORF3a | 108 | L108S | CTt | AGt | 2 | 5 | All | 0 |
ORF3a | 108 | L108L | ctT | ctC | 5 | 5 | AY.102 | 0.000133 |
ORF3a | 108 | L108L | ctT | ctC | 5 | 5 | AY.103 | 0.000031 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | AY.121 | 0.000677 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | AY.13 | 0.000805 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | AY.3.1 | 0.000426 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | AY.37 | 0.00158 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | B.1.1.306 | 0.002192 |
ORF3a | 108 | L108del | CTT | --- | 5 | 5 | B.1.243 | 0.000348 |
ORF3a | 108 | L108I | Ctt | Att | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 108 | L108P | cTt | cCt | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | B.1.526 | 0.000118 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | B.1.561 | 0.001985 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | B.1.602 | 0.03268 |
ORF3a | 108 | L108del | CTT | --- | 5 | 5 | D.2 | 0.000375 |
ORF3a | 108 | L108L | ctT | ctC | 3 | 5 | D.2 | 0.000225 |
ORF3a | 108 | L108L | ctT | ctA | 2 | 5 | D.2 | 0.00015 |
ORF3a | 108 | L108del | CTT | --- | 5 | 5 | P.1 | 0.000079 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | Q.8 | 0.000825 |
ORF3a | 108 | L108P | cTt | cCt | 5 | 5 | R.1 | 0.00045 |
ORF3a | 108 | L108F | Ctt | Ttt | 5 | 5 | W.1 | 0.043478 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | AE.1 | 0.045455 |
ORF3a | 108 | L108P | cTt | cCt | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 108 | L108P | cTt | cCt | 4 | 4 | AY.120 | 0.000149 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | AY.14 | 0.000352 |
ORF3a | 108 | L108P | cTt | cCt | 4 | 4 | AY.25 | 0.000024 |
ORF3a | 108 | L108del | CTT | --- | 4 | 4 | AY.26 | 0.000113 |
ORF3a | 108 | L108V | Ctt | Gtt | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 108 | L108I | Ctt | Att | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 108 | L108del | CTT | --- | 4 | 4 | AY.42 | 0.000161 |
ORF3a | 108 | L108del | CTT | --- | 4 | 4 | AY.47 | 0.000124 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | AY.67 | 0.001857 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | AY.75.1 | 0.000721 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | AY.77 | 0.00451 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | AY.91 | 0.002922 |
ORF3a | 108 | L108P | cTt | cCt | 4 | 4 | B.1 | 0.000037 |
ORF3a | 108 | L108L | ctT | ctC | 2 | 4 | B.1 | 0.000018 |
ORF3a | 108 | L108L | ctT | ctG | 1 | 4 | B.1 | 0.000009 |
ORF3a | 108 | L108L | ctT | ctA | 1 | 4 | B.1 | 0.000009 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | B.1.1.434 | 0.001394 |
ORF3a | 108 | L108R | cTt | cGt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | B.1.158 | 0.095238 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | B.1.177.60 | 0.000874 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | B.1.237 | 0.0199 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | B.1.36.29 | 0.002069 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | B.1.404 | 0.005208 |
ORF3a | 108 | L108del | CTT | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 108 | L108I | Ctt | Att | 4 | 4 | B.1.617.2 | 0.000015 |
ORF3a | 108 | L108del | CTT | --- | 4 | 4 | B.1.621 | 0.000354 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | P.1.15 | 0.000929 |
ORF3a | 108 | L108F | Ctt | Ttt | 4 | 4 | Q.3 | 0.00058 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 3 | 0.111111 | |
ORF3a | 108 | L108F | CtT | TtC | 1 | 3 | 0.055556 | |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | AY.113 | 0.000427 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | AY.16.1 | 0.00141 |
ORF3a | 108 | L108I | Ctt | Att | 3 | 3 | AY.26 | 0.000085 |
ORF3a | 108 | L108L | ctT | ctC | 3 | 3 | AY.39.1 | 0.000119 |
ORF3a | 108 | L108del1 | Ctt | -tt | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 108 | L108H | cTt | cAt | 3 | 3 | AY.43 | 0.000013 |
ORF3a | 108 | L108P | cTt | cCt | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | AY.46.6 | 0.000217 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | AY.5.4 | 0.00083 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | AY.58 | 0.002722 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | AY.70 | 0.000626 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | AY.92 | 0.000862 |
ORF3a | 108 | L108L | ctT | ctC | 2 | 3 | B.1.1 | 0.000036 |
ORF3a | 108 | L108L | ctT | ctG | 1 | 3 | B.1.1 | 0.000018 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.1.34 | 0.039474 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.1.355 | 0.046154 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.139 | 0.002199 |
ORF3a | 108 | L108P | cTt | cCt | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.214.2 | 0.001799 |
ORF3a | 108 | L108V | Ctt | Gtt | 3 | 3 | B.1.293 | 0.0375 |
ORF3a | 108 | L108del | CTT | --- | 3 | 3 | B.1.351 | 0.000089 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.369 | 0.000856 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.416 | 0.003807 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.480 | 0.007463 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.595 | 0.000783 |
ORF3a | 108 | L108L | ctT | ctC | 2 | 3 | B.1.617.2 | 0.000008 |
ORF3a | 108 | L108L | ctT | ctA | 1 | 3 | B.1.617.2 | 0.000004 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.619 | 0.002613 |
ORF3a | 108 | L108F | Ctt | Ttt | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 108 | L108I | Ctt | Att | 3 | 3 | P.1.14 | 0.000143 |
ORF3a | 108 | L108del | CTT | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF3a | 108 | L108R | cTt | cGt | 2 | 2 | 0.111111 | |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | A | 0.000774 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | A.28 | 0.005291 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AD.2 | 0.000438 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | AE.8 | 0.000978 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AU.2 | 0.004843 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | AY.101 | 0.000981 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.105 | 0.001286 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 108 | L108I | CtT | AtC | 2 | 2 | AY.34 | 0.000194 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.39.1 | 0.000079 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 108 | L108L | ctT | ctG | 1 | 2 | AY.4.5 | 0.000107 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 2 | AY.4.5 | 0.000107 |
ORF3a | 108 | L108I | Ctt | Att | 2 | 2 | AY.44 | 0.000012 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | AY.46 | 0.000208 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.63 | 0.000774 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.69 | 0.000373 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 108 | L108I | Ctt | Att | 2 | 2 | AY.9 | 0.000135 |
ORF3a | 108 | L108I | Ctt | Att | 2 | 2 | B | 0.000256 |
ORF3a | 108 | L108V | Ctt | Gtt | 2 | 2 | B.1 | 0.000018 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 108 | L108P | cTt | cCt | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 108 | L108S | CTt | TCt | 1 | 2 | B.1.1 | 0.000018 |
ORF3a | 108 | L108S | CTt | AGt | 1 | 2 | B.1.1 | 0.000018 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.1.207 | 0.002364 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.1.269 | 0.002706 |
ORF3a | 108 | L108V | Ctt | Gtt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.1.372 | 0.001377 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.1.95 | 0.039216 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.111 | 0.00235 |
ORF3a | 108 | L108I | Ctt | Att | 2 | 2 | B.1.160.16 | 0.001859 |
ORF3a | 108 | L108L | ctT | ctC | 2 | 2 | B.1.177 | 0.000026 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.177.55 | 0.004662 |
ORF3a | 108 | L108L | ctT | ctA | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF3a | 108 | L108P | cTt | cCt | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 108 | L108S | CTt | TCt | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.239 | 0.002442 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.265 | 0.002541 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.337 | 0.011173 |
ORF3a | 108 | L108L | ctT | ctC | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.380 | 0.013245 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.397 | 0.009709 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.420 | 0.020833 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.450 | 0.022727 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF3a | 108 | L108I | Ctt | Att | 2 | 2 | B.1.588 | 0.00182 |
ORF3a | 108 | L108del1 | cTt | c-t | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.621.1 | 0.001012 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | B.1.625 | 0.004706 |
ORF3a | 108 | L108V | Ctt | Gtt | 2 | 2 | C.35 | 0.001548 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | C.36 | 0.001821 |
ORF3a | 108 | L108H | cTt | cAt | 2 | 2 | D.2 | 0.00015 |
ORF3a | 108 | L108del1 | cTt | c-t | 2 | 2 | D.2 | 0.00015 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | L.3 | 0.007092 |
ORF3a | 108 | L108I | Ctt | Att | 2 | 2 | P.1 | 0.000032 |
ORF3a | 108 | L108L | ctT | ctC | 2 | 2 | P.1 | 0.000032 |
ORF3a | 108 | L108P | cTt | cCt | 2 | 2 | P.1.12 | 0.000968 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | P.1.12 | 0.000968 |
ORF3a | 108 | L108del | CTT | --- | 2 | 2 | P.1.17.1 | 0.00175 |
ORF3a | 108 | L108F | Ctt | Ttt | 2 | 2 | W.4 | 0.002703 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | 0.055556 | |
ORF3a | 108 | L108A | CTt | GCt | 1 | 1 | 0.055556 | |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | 0.055556 | |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | A | 0.000387 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 108 | L108del2 | CTt | --t | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 108 | L108Q | cTT | cAA | 1 | 1 | All | 0 |
ORF3a | 108 | L108G | CTt | GGt | 1 | 1 | All | 0 |
ORF3a | 108 | L108D | CTt | GAt | 1 | 1 | All | 0 |
ORF3a | 108 | L108A | CTt | GCt | 1 | 1 | All | 0 |
ORF3a | 108 | L108N | CTt | AAt | 1 | 1 | All | 0 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AW.1 | 0.003049 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.11 | 0.001339 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.114 | 0.000231 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.21 | 0.001898 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.28 | 0.00189 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | AY.29 | 0.000016 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 108 | L108del2 | CTT | --N | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 108 | L108R | cTt | cGt | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 108 | L108del1 | cTt | c-t | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 108 | L108del1 | Ctt | -tt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 108 | L108L | ctT | ctA | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 108 | L108H | cTt | cAt | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.51 | 0.000909 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.64 | 0.000595 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 108 | L108del1 | cTt | c-t | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.74 | 0.000116 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | AZ.2.1 | 0.00813 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B | 0.000128 |
ORF3a | 108 | L108del1 | cTt | c-t | 1 | 1 | B.1 | 0.000009 |
ORF3a | 108 | L108H | cTt | cAt | 1 | 1 | B.1 | 0.000009 |
ORF3a | 108 | L108R | cTt | cGt | 1 | 1 | B.1 | 0.000009 |
ORF3a | 108 | L108del2 | CTt | --t | 1 | 1 | B.1 | 0.000009 |
ORF3a | 108 | L108G | CTt | GGt | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | B.1.1.101 | 0.01 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.129 | 0.009174 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.133 | 0.008475 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.177 | 0.019231 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.205 | 0.003717 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.219 | 0.005 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.251 | 0.007937 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.256 | 0.013699 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.274 | 0.005051 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.286 | 0.002899 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.288 | 0.001916 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.303 | 0.002762 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 108 | L108del2 | cTT | c-- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.1.340 | 0.045455 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.375 | 0.011905 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.1.418 | 0.022727 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | B.1.1.419 | 0.007407 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.44 | 0.00241 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 108 | L108Q | cTT | cAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 108 | L108del1 | Ctt | -tt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.1.98 | 0.018519 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.108 | 0.005814 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 108 | L108del2 | CTt | --t | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 108 | L108del1 | Ctt | -tt | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 108 | L108R | cTt | cGt | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 108 | L108del1 | Ctt | -tt | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.177.11 | 0.001698 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.177.18 | 0.00116 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF3a | 108 | L108del1 | Ctt | -tt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 108 | L108L | ctT | ctG | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.222 | 0.001692 |
ORF3a | 108 | L108R | cTt | cGt | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.247 | 0.014925 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 108 | L108del2 | cTT | c-- | 1 | 1 | B.1.258 | 0.000067 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | B.1.258.12 | 0.007874 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.258.18 | 0.1 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.356 | 0.001727 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.36.18 | 0.00042 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.36.25 | 0.002208 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.36.27 | 0.000763 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.36.8 | 0.001 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.36.9 | 0.003215 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.369.1 | 0.027027 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.382 | 0.008929 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.400 | 0.000429 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.401 | 0.008197 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.427 | 0.00005 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.428.3 | 0.012821 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.526 | 0.000024 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.538 | 0.008065 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.539 | 0.017544 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.540 | 0.009709 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.551 | 0.00129 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.558 | 0.004566 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.566 | 0.019231 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.567 | 0.003333 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.568 | 0.001111 |
ORF3a | 108 | L108del1 | cTt | c-t | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.588 | 0.00091 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.590 | 0.004545 |
ORF3a | 108 | L108L | ctT | ctA | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 108 | L108L | ctT | ctC | 1 | 1 | B.1.609 | 0.000479 |
ORF3a | 108 | L108H | cTt | cAt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 108 | L108H | cTt | cAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.620 | 0.000946 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 108 | L108H | cTt | cAt | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.1.8 | 0.001972 |
ORF3a | 108 | L108H | cTt | cAt | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 108 | L108V | Ctt | Gtt | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 108 | L108R | cTt | cGt | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 108 | L108S | CTt | AGt | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 108 | L108D | CTt | GAt | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.30 | 0.014706 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.4.5 | 0.011905 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | B.55 | 0.00295 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | C.16 | 0.00106 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | C.26 | 0.007353 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | C.8 | 0.004464 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | D.2 | 0.000075 |
ORF3a | 108 | L108I | Ctt | Att | 1 | 1 | D.2 | 0.000075 |
ORF3a | 108 | L108N | CTt | AAt | 1 | 1 | D.2 | 0.000075 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | L.1 | 0.001905 |
ORF3a | 108 | L108H | cTt | cAt | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | P.2 | 0.000187 |
ORF3a | 108 | L108P | cTt | cCt | 1 | 1 | P.2 | 0.000187 |
ORF3a | 108 | L108F | Ctt | Ttt | 1 | 1 | P.6 | 0.003145 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 108 | L108del | CTT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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