CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 106 | L106L | syn | ctC | ctT | 53136 | 52777 | 0.993244 | 25708-25710 | |
ORF3a | 106 | L106L | syn | ctC | ctA | 53136 | 214 | 0.0040274 | 25708-25710 | |
ORF3a | 106 | L106L | syn | ctC | ctG | 53136 | 133 | 0.00250301 | 25708-25710 | |
ORF3a | 106 | L106L | syn | CtC | TtG | 53136 | 10 | 0.000188196 | 25708-25710 | |
ORF3a | 106 | L106L | syn | CtC | TtA | 53136 | 2 | 0.0000376393 | 25708-25710 | |
ORF3a | 106 | L106F | nonsyn | Ctc | Ttc | 12426 | 12389 | 0.997022 | 25708-25710 | |
ORF3a | 106 | L106F | nonsyn | CtC | TtT | 12426 | 37 | 0.00297763 | 25708-25710 | |
ORF3a | 106 | L106del | del | CTC | --- | 425 | 425 | 1 | 25708-25710 | |
ORF3a | 106 | L106I | nonsyn | Ctc | Atc | 385 | 382 | 0.992208 | 25708-25710 | |
ORF3a | 106 | L106I | nonsyn | CtC | AtT | 385 | 2 | 0.00519481 | 25708-25710 | |
ORF3a | 106 | L106I | nonsyn | CtC | AtA | 385 | 1 | 0.0025974 | 25708-25710 | |
ORF3a | 106 | L106P | nonsyn | cTc | cCc | 337 | 334 | 0.991098 | 25708-25710 | |
ORF3a | 106 | L106P | nonsyn | cTC | cCT | 337 | 2 | 0.00593472 | 25708-25710 | |
ORF3a | 106 | L106P | nonsyn | cTC | cCG | 337 | 1 | 0.00296736 | 25708-25710 | |
ORF3a | 106 | L106V | nonsyn | Ctc | Gtc | 326 | 324 | 0.993865 | 25708-25710 | |
ORF3a | 106 | L106V | nonsyn | CtC | GtG | 326 | 1 | 0.00306748 | 25708-25710 | |
ORF3a | 106 | L106V | nonsyn | CtC | GtA | 326 | 1 | 0.00306748 | 25708-25710 | |
ORF3a | 106 | L106R | nonsyn | cTc | cGc | 238 | 235 | 0.987395 | 25708-25710 | |
ORF3a | 106 | L106R | nonsyn | cTC | cGA | 238 | 3 | 0.012605 | 25708-25710 | |
ORF3a | 106 | L106H | nonsyn | cTc | cAc | 86 | 86 | 1 | 25708-25710 | |
ORF3a | 106 | L106S | nonsyn | CTc | TCc | 17 | 9 | 0.529412 | 25708-25710 | |
ORF3a | 106 | L106S | nonsyn | CTC | TCT | 17 | 7 | 0.411765 | 25708-25710 | |
ORF3a | 106 | L106S | nonsyn | CTC | TCG | 17 | 1 | 0.0588235 | 25708-25710 | |
ORF3a | 106 | L106del2 | del | CTc | --c | 4 | 3 | 0.75 | 25708-25710 | |
ORF3a | 106 | L106del1 | del | Ctc | -tc | 4 | 2 | 0.5 | 25708-25710 | |
ORF3a | 106 | L106del1 | del | CtC | -tT | 4 | 2 | 0.5 | 25708-25710 | |
ORF3a | 106 | L106del2 | del | CTC | --A | 4 | 1 | 0.25 | 25708-25710 | |
ORF3a | 106 | L106C | nonsyn | CTc | TGc | 3 | 3 | 1 | 25708-25710 | |
ORF3a | 106 | L106X | nonsyn | CTC | TGA | 2 | 2 | 1 | 25708-25710 | |
ORF3a | 106 | L106G | nonsyn | CTc | GGc | 2 | 1 | 0.5 | 25708-25710 | |
ORF3a | 106 | L106G | nonsyn | CTC | GGA | 2 | 1 | 0.5 | 25708-25710 | |
ORF3a | 106 | L106Y | nonsyn | CTc | TAc | 1 | 1 | 1 | 25708-25710 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 106 | L106L | ctC | ctT | 52777 | 53136 | All | 0.010094 |
ORF3a | 106 | L106L | ctC | ctA | 214 | 53136 | All | 0.000041 |
ORF3a | 106 | L106L | ctC | ctG | 133 | 53136 | All | 0.000025 |
ORF3a | 106 | L106L | CtC | TtG | 10 | 53136 | All | 0.000002 |
ORF3a | 106 | L106L | CtC | TtA | 2 | 53136 | All | 0 |
ORF3a | 106 | L106L | ctC | ctT | 29776 | 29776 | B.1.160 | 0.928643 |
ORF3a | 106 | L106F | Ctc | Ttc | 12389 | 12426 | All | 0.00237 |
ORF3a | 106 | L106F | CtC | TtT | 37 | 12426 | All | 0.000007 |
ORF3a | 106 | L106L | ctC | ctT | 4951 | 4956 | AY.3 | 0.049245 |
ORF3a | 106 | L106L | ctC | ctA | 4 | 4956 | AY.3 | 0.00004 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 4956 | AY.3 | 0.00001 |
ORF3a | 106 | L106F | Ctc | Ttc | 4227 | 4229 | B.1.1.7 | 0.003784 |
ORF3a | 106 | L106F | CtC | TtT | 2 | 4229 | B.1.1.7 | 0.000002 |
ORF3a | 106 | L106L | ctC | ctT | 2401 | 2584 | B.1.1.7 | 0.002149 |
ORF3a | 106 | L106L | ctC | ctA | 107 | 2584 | B.1.1.7 | 0.000096 |
ORF3a | 106 | L106L | ctC | ctG | 73 | 2584 | B.1.1.7 | 0.000065 |
ORF3a | 106 | L106L | CtC | TtG | 3 | 2584 | B.1.1.7 | 0.000003 |
ORF3a | 106 | L106L | ctC | ctT | 2449 | 2449 | AY.63 | 0.947389 |
ORF3a | 106 | L106F | Ctc | Ttc | 1664 | 1666 | B.1.621 | 0.147296 |
ORF3a | 106 | L106F | CtC | TtT | 2 | 1666 | B.1.621 | 0.000177 |
ORF3a | 106 | L106L | ctC | ctT | 1039 | 1039 | B.1.160.16 | 0.965613 |
ORF3a | 106 | L106L | ctC | ctT | 775 | 775 | B.1.160.8 | 0.998711 |
ORF3a | 106 | L106L | ctC | ctT | 718 | 730 | AY.4 | 0.001118 |
ORF3a | 106 | L106L | ctC | ctA | 8 | 730 | AY.4 | 0.000012 |
ORF3a | 106 | L106L | ctC | ctG | 4 | 730 | AY.4 | 0.000006 |
ORF3a | 106 | L106F | Ctc | Ttc | 647 | 647 | AY.4 | 0.001007 |
ORF3a | 106 | L106L | ctC | ctT | 585 | 585 | B.1.160.17 | 0.994898 |
ORF3a | 106 | L106F | Ctc | Ttc | 547 | 548 | AY.25 | 0.00329 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 548 | AY.25 | 0.000006 |
ORF3a | 106 | L106L | ctC | ctT | 535 | 539 | B.1 | 0.0049 |
ORF3a | 106 | L106L | ctC | ctA | 2 | 539 | B.1 | 0.000018 |
ORF3a | 106 | L106L | ctC | ctG | 2 | 539 | B.1 | 0.000018 |
ORF3a | 106 | L106F | Ctc | Ttc | 493 | 493 | AY.43 | 0.002184 |
ORF3a | 106 | L106L | ctC | ctT | 479 | 479 | B.1.160.7 | 0.995842 |
ORF3a | 106 | L106L | ctC | ctT | 451 | 451 | B.1.160.14 | 0.955508 |
ORF3a | 106 | L106F | Ctc | Ttc | 435 | 435 | P.1 | 0.006853 |
ORF3a | 106 | L106del | CTC | --- | 425 | 425 | All | 0.000081 |
ORF3a | 106 | L106L | ctC | ctT | 409 | 409 | B.1.160.26 | 0.990315 |
ORF3a | 106 | L106L | ctC | ctT | 374 | 388 | B.1.617.2 | 0.001408 |
ORF3a | 106 | L106L | ctC | ctG | 8 | 388 | B.1.617.2 | 0.00003 |
ORF3a | 106 | L106L | ctC | ctA | 6 | 388 | B.1.617.2 | 0.000023 |
ORF3a | 106 | L106I | Ctc | Atc | 382 | 385 | All | 0.000073 |
ORF3a | 106 | L106I | CtC | AtT | 2 | 385 | All | 0 |
ORF3a | 106 | L106I | CtC | AtA | 1 | 385 | All | 0 |
ORF3a | 106 | L106L | ctC | ctT | 338 | 338 | B.1.160.28 | 0.988304 |
ORF3a | 106 | L106P | cTc | cCc | 334 | 337 | All | 0.000064 |
ORF3a | 106 | L106P | cTC | cCT | 2 | 337 | All | 0 |
ORF3a | 106 | L106P | cTC | cCG | 1 | 337 | All | 0 |
ORF3a | 106 | L106V | Ctc | Gtc | 324 | 326 | All | 0.000062 |
ORF3a | 106 | L106V | CtC | GtG | 1 | 326 | All | 0 |
ORF3a | 106 | L106V | CtC | GtA | 1 | 326 | All | 0 |
ORF3a | 106 | L106F | Ctc | Ttc | 312 | 312 | B.1.617.2 | 0.001175 |
ORF3a | 106 | L106F | Ctc | Ttc | 289 | 289 | B.1.351 | 0.008591 |
ORF3a | 106 | L106L | ctC | ctT | 269 | 282 | AY.43 | 0.001192 |
ORF3a | 106 | L106L | ctC | ctA | 12 | 282 | AY.43 | 0.000053 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 282 | AY.43 | 0.000004 |
ORF3a | 106 | L106F | Ctc | Ttc | 279 | 279 | B.1.36 | 0.040706 |
ORF3a | 106 | L106L | ctC | ctT | 275 | 275 | AY.119 | 0.00971 |
ORF3a | 106 | L106F | Ctc | Ttc | 263 | 264 | AY.44 | 0.001601 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 264 | AY.44 | 0.000006 |
ORF3a | 106 | L106L | ctC | ctT | 243 | 246 | B.1.2 | 0.00214 |
ORF3a | 106 | L106L | ctC | ctG | 2 | 246 | B.1.2 | 0.000018 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 246 | B.1.2 | 0.000009 |
ORF3a | 106 | L106R | cTc | cGc | 235 | 238 | All | 0.000045 |
ORF3a | 106 | L106R | cTC | cGA | 3 | 238 | All | 0.000001 |
ORF3a | 106 | L106L | ctC | ctT | 232 | 232 | B.1.160.29 | 0.978903 |
ORF3a | 106 | L106F | Ctc | Ttc | 227 | 228 | B.1.2 | 0.001999 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 228 | B.1.2 | 0.000009 |
ORF3a | 106 | L106I | Ctc | Atc | 226 | 226 | AY.99.2 | 0.020828 |
ORF3a | 106 | L106L | ctC | ctT | 226 | 226 | B.1.160.24 | 1 |
ORF3a | 106 | L106L | ctC | ctT | 225 | 225 | B.1.160.33 | 0.995575 |
ORF3a | 106 | L106L | ctC | ctT | 198 | 215 | AY.103 | 0.001229 |
ORF3a | 106 | L106L | ctC | ctG | 17 | 215 | AY.103 | 0.000106 |
ORF3a | 106 | L106L | ctC | ctT | 205 | 205 | B.1.160.23 | 0.990338 |
ORF3a | 106 | L106L | ctC | ctT | 198 | 198 | B.1.160.15 | 0.980198 |
ORF3a | 106 | L106L | ctC | ctT | 197 | 197 | B.1.160.30 | 0.58631 |
ORF3a | 106 | L106L | ctC | ctT | 185 | 185 | B.1.160.32 | 0.793991 |
ORF3a | 106 | L106F | Ctc | Ttc | 176 | 177 | B.1 | 0.001612 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 177 | B.1 | 0.000009 |
ORF3a | 106 | L106L | ctC | ctT | 174 | 174 | B.1.160.11 | 0.994286 |
ORF3a | 106 | L106L | ctC | ctT | 144 | 153 | AY.44 | 0.000876 |
ORF3a | 106 | L106L | ctC | ctA | 5 | 153 | AY.44 | 0.00003 |
ORF3a | 106 | L106L | ctC | ctG | 4 | 153 | AY.44 | 0.000024 |
ORF3a | 106 | L106L | ctC | ctT | 153 | 153 | B.1.160.12 | 0.980769 |
ORF3a | 106 | L106L | ctC | ctT | 146 | 146 | B.1.160.22 | 0.986486 |
ORF3a | 106 | L106L | ctC | ctT | 137 | 138 | B.1.177 | 0.001804 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 138 | B.1.177 | 0.000013 |
ORF3a | 106 | L106L | ctC | ctT | 137 | 137 | B.1.160.18 | 1 |
ORF3a | 106 | L106L | ctC | ctT | 136 | 136 | B.1.160.9 | 0.978417 |
ORF3a | 106 | L106V | Ctc | Gtc | 133 | 133 | AY.4.5 | 0.014296 |
ORF3a | 106 | L106F | Ctc | Ttc | 122 | 123 | AY.103 | 0.000758 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 123 | AY.103 | 0.000006 |
ORF3a | 106 | L106F | Ctc | Ttc | 123 | 123 | C.35 | 0.095201 |
ORF3a | 106 | L106L | ctC | ctT | 122 | 122 | B.1.160.31 | 0.983871 |
ORF3a | 106 | L106L | ctC | ctT | 121 | 121 | AB.1 | 0.991803 |
ORF3a | 106 | L106L | ctC | ctT | 120 | 120 | AY.25 | 0.000722 |
ORF3a | 106 | L106L | ctC | ctT | 115 | 119 | B.1.1 | 0.002086 |
ORF3a | 106 | L106L | ctC | ctA | 4 | 119 | B.1.1 | 0.000073 |
ORF3a | 106 | L106L | ctC | ctT | 117 | 117 | B.1.160.10 | 0.943548 |
ORF3a | 106 | L106L | ctC | ctT | 95 | 107 | AY.39.1 | 0.003763 |
ORF3a | 106 | L106L | ctC | ctA | 12 | 107 | AY.39.1 | 0.000475 |
ORF3a | 106 | L106F | Ctc | Ttc | 106 | 106 | AY.47 | 0.003297 |
ORF3a | 106 | L106F | Ctc | Ttc | 102 | 102 | AY.3 | 0.001015 |
ORF3a | 106 | L106L | ctC | ctT | 94 | 97 | AY.34 | 0.009115 |
ORF3a | 106 | L106L | ctC | ctA | 3 | 97 | AY.34 | 0.000291 |
ORF3a | 106 | L106F | Ctc | Ttc | 95 | 96 | B.1.1 | 0.001723 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 96 | B.1.1 | 0.000018 |
ORF3a | 106 | L106L | ctC | ctT | 95 | 95 | B.1.221 | 0.006748 |
ORF3a | 106 | L106L | ctC | ctT | 92 | 94 | AY.102 | 0.002439 |
ORF3a | 106 | L106L | ctC | ctA | 2 | 94 | AY.102 | 0.000053 |
ORF3a | 106 | L106P | cTc | cCc | 94 | 94 | B.1.1.7 | 0.000084 |
ORF3a | 106 | L106F | Ctc | Ttc | 92 | 92 | AY.20 | 0.003576 |
ORF3a | 106 | L106L | ctC | ctT | 90 | 90 | B.1.160.25 | 1 |
ORF3a | 106 | L106H | cTc | cAc | 86 | 86 | All | 0.000016 |
ORF3a | 106 | L106F | Ctc | Ttc | 86 | 86 | B.1.1.519 | 0.003415 |
ORF3a | 106 | L106L | ctC | ctT | 76 | 76 | B.1.160.20 | 0.678571 |
ORF3a | 106 | L106F | Ctc | Ttc | 75 | 75 | B.1.429 | 0.001765 |
ORF3a | 106 | L106L | ctC | ctT | 74 | 74 | B.1.622 | 0.961039 |
ORF3a | 106 | L106L | ctC | ctT | 72 | 72 | AY.117 | 0.006085 |
ORF3a | 106 | L106P | cTc | cCc | 72 | 72 | B.1.258.17 | 0.007486 |
ORF3a | 106 | L106L | ctC | ctT | 70 | 71 | P.1 | 0.001103 |
ORF3a | 106 | L106L | CtC | TtG | 1 | 71 | P.1 | 0.000016 |
ORF3a | 106 | L106F | Ctc | Ttc | 69 | 69 | A.23.1 | 0.048592 |
ORF3a | 106 | L106del | CTC | --- | 69 | 69 | B.1.1.7 | 0.000062 |
ORF3a | 106 | L106L | ctC | ctT | 66 | 66 | AY.100 | 0.003036 |
ORF3a | 106 | L106L | ctC | ctT | 66 | 66 | B.1.160.27 | 1 |
ORF3a | 106 | L106L | ctC | ctT | 65 | 65 | B.1.164 | 0.970149 |
ORF3a | 106 | L106F | Ctc | Ttc | 63 | 63 | AY.4.2 | 0.001366 |
ORF3a | 106 | L106F | Ctc | Ttc | 62 | 62 | AY.5.4 | 0.017156 |
ORF3a | 106 | L106F | Ctc | Ttc | 62 | 62 | B.1.526 | 0.001457 |
ORF3a | 106 | L106F | Ctc | Ttc | 61 | 61 | B.1.177.53 | 0.145933 |
ORF3a | 106 | L106V | Ctc | Gtc | 61 | 61 | B.1.617.2 | 0.00023 |
ORF3a | 106 | L106L | ctC | ctT | 59 | 59 | B.1.429 | 0.001388 |
ORF3a | 106 | L106L | ctC | ctT | 53 | 57 | B.1.258 | 0.003527 |
ORF3a | 106 | L106L | ctC | ctG | 3 | 57 | B.1.258 | 0.0002 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 57 | B.1.258 | 0.000067 |
ORF3a | 106 | L106F | Ctc | Ttc | 55 | 55 | AY.113 | 0.007831 |
ORF3a | 106 | L106V | Ctc | Gtc | 54 | 54 | AY.4 | 0.000084 |
ORF3a | 106 | L106L | ctC | ctT | 53 | 53 | AY.20 | 0.00206 |
ORF3a | 106 | L106L | ctC | ctT | 52 | 52 | AY.47 | 0.001617 |
ORF3a | 106 | L106L | ctC | ctT | 50 | 50 | AY.6 | 0.002056 |
ORF3a | 106 | L106F | Ctc | Ttc | 50 | 50 | B.1.177 | 0.000658 |
ORF3a | 106 | L106L | ctC | ctT | 49 | 49 | AY.3.1 | 0.004178 |
ORF3a | 106 | L106del | CTC | --- | 49 | 49 | AY.4 | 0.000076 |
ORF3a | 106 | L106F | Ctc | Ttc | 49 | 49 | AY.5 | 0.001012 |
ORF3a | 106 | L106L | ctC | ctT | 49 | 49 | B.1.160.21 | 1 |
ORF3a | 106 | L106F | Ctc | Ttc | 48 | 48 | B.1.311 | 0.01318 |
ORF3a | 106 | L106L | ctC | ctT | 46 | 47 | AY.29 | 0.000726 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 47 | AY.29 | 0.000016 |
ORF3a | 106 | L106L | ctC | ctT | 45 | 47 | B.1.526 | 0.001058 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 47 | B.1.526 | 0.000024 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 47 | B.1.526 | 0.000024 |
ORF3a | 106 | L106F | Ctc | Ttc | 46 | 46 | P.1.14 | 0.002199 |
ORF3a | 106 | L106L | ctC | ctT | 45 | 45 | B.1.597 | 0.208333 |
ORF3a | 106 | L106del | CTC | --- | 42 | 42 | AY.103 | 0.000261 |
ORF3a | 106 | L106F | Ctc | Ttc | 41 | 41 | AY.100 | 0.001886 |
ORF3a | 106 | L106R | cTc | cGc | 41 | 41 | AY.44 | 0.00025 |
ORF3a | 106 | L106L | ctC | ctT | 39 | 40 | AY.39 | 0.000964 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 40 | AY.39 | 0.000025 |
ORF3a | 106 | L106F | Ctc | Ttc | 40 | 40 | B.1.1.222 | 0.00816 |
ORF3a | 106 | L106F | Ctc | Ttc | 39 | 39 | AY.102 | 0.001034 |
ORF3a | 106 | L106L | ctC | ctT | 38 | 38 | B.1.1.519 | 0.001509 |
ORF3a | 106 | L106L | ctC | ctT | 38 | 38 | B.1.177.31 | 0.436782 |
ORF3a | 106 | L106L | ctC | ctT | 38 | 38 | B.1.575 | 0.011529 |
ORF3a | 106 | L106F | Ctc | Ttc | 37 | 37 | B.1.279 | 0.019004 |
ORF3a | 106 | L106L | ctC | ctT | 35 | 36 | AY.5 | 0.000723 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 36 | AY.5 | 0.000021 |
ORF3a | 106 | L106del | CTC | --- | 35 | 35 | B.1 | 0.000321 |
ORF3a | 106 | L106L | ctC | ctT | 35 | 35 | B.1.160.13 | 0.972222 |
ORF3a | 106 | L106L | ctC | ctT | 35 | 35 | B.1.351.2 | 0.01059 |
ORF3a | 106 | L106F | Ctc | Ttc | 34 | 34 | AY.39.1 | 0.001347 |
ORF3a | 106 | L106F | Ctc | Ttc | 34 | 34 | AY.4.1 | 0.025074 |
ORF3a | 106 | L106R | cTc | cGc | 34 | 34 | B.1.1.7 | 0.00003 |
ORF3a | 106 | L106L | ctC | ctT | 34 | 34 | B.1.177.44 | 0.017644 |
ORF3a | 106 | L106F | Ctc | Ttc | 33 | 33 | AY.98 | 0.002607 |
ORF3a | 106 | L106L | ctC | ctT | 32 | 33 | B.1.1.216 | 0.028495 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 33 | B.1.1.216 | 0.00089 |
ORF3a | 106 | L106L | ctC | ctT | 28 | 33 | B.1.621 | 0.002479 |
ORF3a | 106 | L106L | CtC | TtG | 5 | 33 | B.1.621 | 0.000443 |
ORF3a | 106 | L106F | Ctc | Ttc | 31 | 31 | AY.39 | 0.000766 |
ORF3a | 106 | L106F | Ctc | Ttc | 31 | 31 | B.1.349 | 0.022159 |
ORF3a | 106 | L106L | ctC | ctT | 31 | 31 | P.2 | 0.005786 |
ORF3a | 106 | L106del | CTC | --- | 30 | 30 | AY.43 | 0.000133 |
ORF3a | 106 | L106F | Ctc | Ttc | 30 | 30 | P.2 | 0.005599 |
ORF3a | 106 | L106L | ctC | ctT | 29 | 29 | AY.41 | 0.008524 |
ORF3a | 106 | L106P | cTc | cCc | 29 | 29 | B.1.617.2 | 0.000109 |
ORF3a | 106 | L106L | ctC | ctT | 28 | 28 | B.1.160.19 | 1 |
ORF3a | 106 | L106L | ctC | ctT | 27 | 27 | B.1.1.214 | 0.001497 |
ORF3a | 106 | L106L | ctC | ctT | 27 | 27 | B.1.240 | 0.00582 |
ORF3a | 106 | L106L | ctC | ctT | 26 | 26 | AY.82 | 0.035278 |
ORF3a | 106 | L106L | ctC | ctT | 25 | 25 | B.1.1.445 | 0.925926 |
ORF3a | 106 | L106F | Ctc | Ttc | 25 | 25 | B.1.36.18 | 0.010504 |
ORF3a | 106 | L106I | Ctc | Atc | 24 | 24 | AY.67 | 0.011142 |
ORF3a | 106 | L106del | CTC | --- | 24 | 24 | B.1.177 | 0.000316 |
ORF3a | 106 | L106F | Ctc | Ttc | 23 | 23 | B.1.1.153 | 0.025192 |
ORF3a | 106 | L106L | ctC | ctT | 22 | 23 | B.1.243 | 0.001531 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 23 | B.1.243 | 0.00007 |
ORF3a | 106 | L106L | ctC | ctT | 23 | 23 | B.1.351 | 0.000684 |
ORF3a | 106 | L106L | ctC | ctT | 23 | 23 | B.1.618 | 0.092742 |
ORF3a | 106 | L106F | Ctc | Ttc | 22 | 22 | AY.119 | 0.000777 |
ORF3a | 106 | L106L | ctC | ctT | 22 | 22 | B.1.139 | 0.016129 |
ORF3a | 106 | L106P | cTc | cCc | 22 | 22 | B.1.2 | 0.000194 |
ORF3a | 106 | L106H | cTc | cAc | 22 | 22 | B.1.36.17 | 0.01087 |
ORF3a | 106 | L106I | Ctc | Atc | 22 | 22 | B.1.617.2 | 0.000083 |
ORF3a | 106 | L106L | ctC | ctT | 21 | 21 | AY.4.2 | 0.000455 |
ORF3a | 106 | L106L | ctC | ctT | 21 | 21 | B.1.1.291 | 0.01559 |
ORF3a | 106 | L106L | ctC | ctT | 21 | 21 | B.1.36 | 0.003064 |
ORF3a | 106 | L106R | cTc | cGc | 21 | 21 | Q.3 | 0.003046 |
ORF3a | 106 | L106H | cTc | cAc | 20 | 20 | B.1.1.519 | 0.000794 |
ORF3a | 106 | L106L | ctC | ctT | 20 | 20 | B.1.427 | 0.00101 |
ORF3a | 106 | L106L | ctC | ctT | 20 | 20 | C.36 | 0.018215 |
ORF3a | 106 | L106L | ctC | ctT | 17 | 19 | AY.120 | 0.000632 |
ORF3a | 106 | L106L | ctC | ctA | 2 | 19 | AY.120 | 0.000074 |
ORF3a | 106 | L106L | ctC | ctT | 19 | 19 | AY.23 | 0.001325 |
ORF3a | 106 | L106R | cTc | cGc | 19 | 19 | AY.25 | 0.000114 |
ORF3a | 106 | L106L | ctC | ctT | 19 | 19 | AY.4.1 | 0.014012 |
ORF3a | 106 | L106L | ctC | ctT | 19 | 19 | B.1.1.222 | 0.003876 |
ORF3a | 106 | L106F | CtC | TtT | 18 | 19 | B.1.160 | 0.000561 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 19 | B.1.160 | 0.000031 |
ORF3a | 106 | L106L | ctC | ctT | 19 | 19 | B.1.258.11 | 0.007531 |
ORF3a | 106 | L106F | Ctc | Ttc | 19 | 19 | B.1.427 | 0.000959 |
ORF3a | 106 | L106R | cTc | cGc | 19 | 19 | P.1 | 0.000299 |
ORF3a | 106 | L106H | cTc | cAc | 18 | 18 | AY.111 | 0.003297 |
ORF3a | 106 | L106R | cTc | cGc | 18 | 18 | B.1.1.306 | 0.007891 |
ORF3a | 106 | L106F | Ctc | Ttc | 18 | 18 | B.1.1.372 | 0.012397 |
ORF3a | 106 | L106I | Ctc | Atc | 18 | 18 | B.1.1.7 | 0.000016 |
ORF3a | 106 | L106F | Ctc | Ttc | 18 | 18 | B.1.177.35 | 0.01244 |
ORF3a | 106 | L106S | CTc | TCc | 9 | 17 | All | 0.000002 |
ORF3a | 106 | L106S | CTC | TCT | 7 | 17 | All | 0.000001 |
ORF3a | 106 | L106S | CTC | TCG | 1 | 17 | All | 0 |
ORF3a | 106 | L106F | Ctc | Ttc | 17 | 17 | AY.26 | 0.000481 |
ORF3a | 106 | L106L | ctC | ctT | 17 | 17 | B | 0.002173 |
ORF3a | 106 | L106L | ctC | ctT | 17 | 17 | Q.4 | 0.007731 |
ORF3a | 106 | L106L | ctC | ctT | 16 | 16 | AY.45 | 0.001947 |
ORF3a | 106 | L106L | ctC | ctT | 16 | 16 | AY.46 | 0.001665 |
ORF3a | 106 | L106L | ctC | ctA | 12 | 16 | B.1.1.306 | 0.005261 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 16 | B.1.1.306 | 0.001754 |
ORF3a | 106 | L106L | ctC | ctT | 16 | 16 | B.1.1.434 | 0.005577 |
ORF3a | 106 | L106L | ctC | ctT | 16 | 16 | B.1.111 | 0.018801 |
ORF3a | 106 | L106F | Ctc | Ttc | 16 | 16 | B.1.177.16 | 0.010631 |
ORF3a | 106 | L106L | ctC | ctT | 15 | 15 | A.2.5 | 0.007485 |
ORF3a | 106 | L106L | ctC | ctT | 15 | 15 | AY.35 | 0.003496 |
ORF3a | 106 | L106L | ctC | ctT | 15 | 15 | AY.98 | 0.001185 |
ORF3a | 106 | L106F | Ctc | Ttc | 15 | 15 | B.1.1.514 | 0.576923 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | AY.48 | 0.006512 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | AY.6 | 0.000576 |
ORF3a | 106 | L106L | ctC | ctT | 14 | 14 | AY.75 | 0.000784 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | B.1.1.1 | 0.004574 |
ORF3a | 106 | L106L | ctC | ctT | 14 | 14 | B.1.1.39 | 0.007136 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | B.1.1.50 | 0.009504 |
ORF3a | 106 | L106L | ctC | ctT | 14 | 14 | B.1.177.21 | 0.001071 |
ORF3a | 106 | L106F | Ctc | Ttc | 14 | 14 | B.1.391 | 0.015784 |
ORF3a | 106 | L106L | ctC | ctT | 14 | 14 | C.16 | 0.014846 |
ORF3a | 106 | L106V | Ctc | Gtc | 13 | 13 | AY.100 | 0.000598 |
ORF3a | 106 | L106F | Ctc | Ttc | 13 | 13 | AY.13 | 0.002093 |
ORF3a | 106 | L106del | CTC | --- | 13 | 13 | AY.25 | 0.000078 |
ORF3a | 106 | L106F | Ctc | Ttc | 13 | 13 | AY.29 | 0.000205 |
ORF3a | 106 | L106del | CTC | --- | 13 | 13 | AY.30 | 0.005144 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 13 | AY.36 | 0.001334 |
ORF3a | 106 | L106L | ctC | ctA | 4 | 13 | AY.36 | 0.000593 |
ORF3a | 106 | L106I | Ctc | Atc | 13 | 13 | AY.4 | 0.00002 |
ORF3a | 106 | L106F | Ctc | Ttc | 13 | 13 | AY.45 | 0.001582 |
ORF3a | 106 | L106L | ctC | ctT | 13 | 13 | B.1.1.157 | 0.011872 |
ORF3a | 106 | L106L | ctC | ctT | 13 | 13 | B.1.1.433 | 0.018519 |
ORF3a | 106 | L106L | ctC | ctT | 13 | 13 | B.1.509 | 0.011255 |
ORF3a | 106 | L106L | ctC | ctT | 12 | 13 | B.23 | 0.035088 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 13 | B.23 | 0.002924 |
ORF3a | 106 | L106L | ctC | ctT | 12 | 13 | P.1.14 | 0.000574 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 13 | P.1.14 | 0.000048 |
ORF3a | 106 | L106L | ctC | ctT | 12 | 12 | AY.121 | 0.001624 |
ORF3a | 106 | L106L | ctC | ctT | 12 | 12 | AY.27 | 0.000777 |
ORF3a | 106 | L106L | ctC | ctT | 10 | 12 | AY.42 | 0.000402 |
ORF3a | 106 | L106L | ctC | ctA | 2 | 12 | AY.42 | 0.00008 |
ORF3a | 106 | L106V | Ctc | Gtc | 12 | 12 | AY.43 | 0.000053 |
ORF3a | 106 | L106I | Ctc | Atc | 12 | 12 | AY.44 | 0.000073 |
ORF3a | 106 | L106L | ctC | ctT | 12 | 12 | AY.46.6 | 0.000866 |
ORF3a | 106 | L106L | ctC | ctT | 12 | 12 | B.1.1.277 | 0.009105 |
ORF3a | 106 | L106L | ctC | ctT | 12 | 12 | B.1.177.43 | 0.017725 |
ORF3a | 106 | L106L | ctC | ctT | 12 | 12 | B.1.177.73 | 0.006795 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | B.1.177.82 | 0.005728 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | B.1.234 | 0.001583 |
ORF3a | 106 | L106L | ctC | ctT | 11 | 12 | B.1.311 | 0.00302 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 12 | B.1.311 | 0.000275 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | B.1.351.3 | 0.010517 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | B.1.36.29 | 0.006208 |
ORF3a | 106 | L106L | ctC | ctT | 12 | 12 | B.1.596 | 0.001046 |
ORF3a | 106 | L106del | CTC | --- | 12 | 12 | B.1.617.2 | 0.000045 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | P.1.17 | 0.001941 |
ORF3a | 106 | L106F | Ctc | Ttc | 12 | 12 | Q.1 | 0.001516 |
ORF3a | 106 | L106L | ctC | ctT | 11 | 11 | AY.118 | 0.000689 |
ORF3a | 106 | L106F | Ctc | Ttc | 11 | 11 | AY.36 | 0.00163 |
ORF3a | 106 | L106F | Ctc | Ttc | 11 | 11 | AY.42 | 0.000443 |
ORF3a | 106 | L106L | ctC | ctT | 11 | 11 | B.1.239 | 0.013431 |
ORF3a | 106 | L106L | ctC | ctT | 11 | 11 | B.1.258.17 | 0.001144 |
ORF3a | 106 | L106L | ctC | ctT | 11 | 11 | B.1.36.8 | 0.011 |
ORF3a | 106 | L106L | ctC | ctT | 11 | 11 | Q.1 | 0.00139 |
ORF3a | 106 | L106I | Ctc | Atc | 10 | 10 | AY.103 | 0.000062 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 10 | AY.113 | 0.000854 |
ORF3a | 106 | L106L | ctC | ctG | 4 | 10 | AY.113 | 0.00057 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.120 | 0.000372 |
ORF3a | 106 | L106L | ctC | ctT | 10 | 10 | AY.26 | 0.000283 |
ORF3a | 106 | L106del | CTC | --- | 10 | 10 | AY.29 | 0.000158 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.3.1 | 0.000853 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.37 | 0.003161 |
ORF3a | 106 | L106P | cTc | cCc | 10 | 10 | AY.43 | 0.000044 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 10 | AY.5.3 | 0.003036 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 10 | AY.5.3 | 0.000337 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 10 | AY.5.4 | 0.00249 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 10 | AY.5.4 | 0.000277 |
ORF3a | 106 | L106L | ctC | ctT | 10 | 10 | AY.61 | 0.001048 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.61 | 0.001048 |
ORF3a | 106 | L106L | ctC | ctT | 10 | 10 | AY.62 | 0.004357 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AY.9.2 | 0.000367 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 10 | AY.9.2 | 0.000257 |
ORF3a | 106 | L106L | ctC | ctA | 3 | 10 | AY.9.2 | 0.00011 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | AZ.1 | 0.008673 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | B.1.1.148 | 0.087719 |
ORF3a | 106 | L106L | ctC | ctT | 10 | 10 | B.1.1.284 | 0.001074 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | B.1.177.42 | 0.008945 |
ORF3a | 106 | L106L | ctC | ctT | 10 | 10 | B.1.36.29 | 0.005173 |
ORF3a | 106 | L106F | Ctc | Ttc | 10 | 10 | B.1.433 | 0.031949 |
ORF3a | 106 | L106L | ctC | ctT | 10 | 10 | B.1.76 | 0.113636 |
ORF3a | 106 | L106L | ctC | ctT | 10 | 10 | Q.8 | 0.001649 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 9 | AY.116 | 0.002581 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.117 | 0.000761 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.120.2.1 | 0.004484 |
ORF3a | 106 | L106R | cTc | cGc | 9 | 9 | AY.41 | 0.002646 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.46.4 | 0.001481 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 9 | AY.51 | 0.008182 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.74 | 0.001041 |
ORF3a | 106 | L106R | cTc | cGc | 9 | 9 | AY.75 | 0.000504 |
ORF3a | 106 | L106P | cTc | cCc | 9 | 9 | AY.9 | 0.000608 |
ORF3a | 106 | L106F | Ctc | Ttc | 9 | 9 | AY.9 | 0.000608 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 9 | AY.98.1 | 0.000436 |
ORF3a | 106 | L106R | cTc | cGc | 9 | 9 | B.1 | 0.000082 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 9 | B.1.1.50 | 0.00611 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 9 | B.1.409 | 0.007031 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 9 | B.1.637 | 0.000658 |
ORF3a | 106 | L106L | ctC | ctT | 9 | 9 | D.2 | 0.000675 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | AY.14 | 0.000704 |
ORF3a | 106 | L106del | CTC | --- | 8 | 8 | AY.3 | 0.00008 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | AY.33 | 0.000534 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 8 | AY.34 | 0.000679 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 8 | AY.34 | 0.000097 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | AY.46 | 0.000833 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 8 | AY.46.1 | 0.007187 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 8 | AY.46.1 | 0.001027 |
ORF3a | 106 | L106L | ctC | ctT | 8 | 8 | AY.77 | 0.009019 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | AY.98.1 | 0.000387 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | B.1.1.216 | 0.007124 |
ORF3a | 106 | L106L | ctC | ctT | 8 | 8 | B.1.1.317 | 0.003294 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | B.1.1.37 | 0.001543 |
ORF3a | 106 | L106L | ctC | ctT | 8 | 8 | B.1.177.77 | 0.00581 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | B.1.232 | 0.004299 |
ORF3a | 106 | L106L | ctC | ctT | 8 | 8 | B.1.561 | 0.003176 |
ORF3a | 106 | L106F | Ctc | Ttc | 8 | 8 | C.37 | 0.000929 |
ORF3a | 106 | L106L | ctC | ctT | 8 | 8 | Q.7 | 0.008889 |
ORF3a | 106 | L106L | ctC | ctT | 8 | 8 | R.1 | 0.00072 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 7 | 0.333333 | |
ORF3a | 106 | L106F | CtC | TtT | 1 | 7 | 0.055556 | |
ORF3a | 106 | L106R | cTc | cGc | 7 | 7 | AY.103 | 0.000043 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 7 | AY.106 | 0.002344 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.106 | 0.002344 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.107 | 0.003262 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.16 | 0.002658 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.23 | 0.000488 |
ORF3a | 106 | L106P | cTc | cCc | 7 | 7 | AY.4 | 0.000011 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.54 | 0.000667 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 7 | AY.55 | 0.006422 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 7 | AY.88 | 0.006189 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 7 | AY.9 | 0.000473 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.92 | 0.002011 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | AY.95 | 0.005327 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | B.1.1.322 | 0.061404 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 7 | B.1.1.33 | 0.002525 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 7 | B.1.1.33 | 0.000421 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 7 | B.1.147 | 0.005291 |
ORF3a | 106 | L106del | CTC | --- | 7 | 7 | B.1.2 | 0.000062 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 7 | B.1.232 | 0.003761 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | B.1.243 | 0.000487 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 7 | B.1.346 | 0.009174 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | B.1.517 | 0.002989 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | P.1.12 | 0.003388 |
ORF3a | 106 | L106L | ctC | ctT | 7 | 7 | P.1.17 | 0.001132 |
ORF3a | 106 | L106F | Ctc | Ttc | 7 | 7 | P.4 | 0.026616 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | AY.110 | 0.000676 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | AY.111 | 0.001099 |
ORF3a | 106 | L106I | Ctc | Atc | 6 | 6 | AY.113 | 0.000854 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | AY.33 | 0.000401 |
ORF3a | 106 | L106del | CTC | --- | 6 | 6 | AY.39 | 0.000148 |
ORF3a | 106 | L106P | cTc | cCc | 6 | 6 | AY.39.1 | 0.000238 |
ORF3a | 106 | L106R | cTc | cGc | 6 | 6 | AY.4 | 0.000009 |
ORF3a | 106 | L106L | ctC | ctG | 4 | 6 | AY.52 | 0.003257 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 6 | AY.52 | 0.000814 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 6 | AY.52 | 0.000814 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | AY.75.1 | 0.001082 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | AY.79 | 0.007264 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | AY.84 | 0.002625 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | B.1.1.1 | 0.00196 |
ORF3a | 106 | L106V | Ctc | Gtc | 6 | 6 | B.1.1.214 | 0.000333 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.1.214 | 0.000333 |
ORF3a | 106 | L106L | ctC | ctT | 5 | 6 | B.1.1.25 | 0.002843 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 6 | B.1.1.25 | 0.000569 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.1.28 | 0.001867 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.1.306 | 0.00263 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | B.1.177.20 | 0.009105 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.177.4 | 0.001266 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 6 | B.1.221 | 0.000355 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 6 | B.1.221 | 0.000071 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.258.17 | 0.000624 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | B.1.281 | 0.130435 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | B.1.416.1 | 0.009375 |
ORF3a | 106 | L106I | Ctc | Atc | 6 | 6 | B.1.438.1 | 0.000644 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | B.1.473 | 0.115385 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | B.1.564 | 0.002555 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | B.1.564 | 0.002555 |
ORF3a | 106 | L106H | cTc | cAc | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 106 | L106F | Ctc | Ttc | 6 | 6 | P.1.15 | 0.001394 |
ORF3a | 106 | L106L | ctC | ctT | 6 | 6 | P.1.15 | 0.001394 |
ORF3a | 106 | L106L | ctC | ctA | 2 | 5 | 0.111111 | |
ORF3a | 106 | L106L | CtC | TtA | 2 | 5 | 0.111111 | |
ORF3a | 106 | L106L | ctC | ctT | 1 | 5 | 0.055556 | |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.111 | 0.000916 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.114 | 0.001156 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.120.2 | 0.006427 |
ORF3a | 106 | L106L | ctC | ctT | 5 | 5 | AY.13 | 0.000805 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.40 | 0.004822 |
ORF3a | 106 | L106L | ctC | ctT | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.62 | 0.002179 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.65 | 0.002665 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | AY.71 | 0.002375 |
ORF3a | 106 | L106V | Ctc | Gtc | 5 | 5 | AY.98 | 0.000395 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B | 0.000639 |
ORF3a | 106 | L106L | ctC | ctT | 5 | 5 | B.1.1.336 | 0.083333 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.1.358 | 0.172414 |
ORF3a | 106 | L106L | ctC | ctT | 5 | 5 | B.1.1.70 | 0.001705 |
ORF3a | 106 | L106del | CTC | --- | 5 | 5 | B.1.160 | 0.000156 |
ORF3a | 106 | L106P | cTc | cCc | 5 | 5 | B.1.177 | 0.000066 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.177.12 | 0.000758 |
ORF3a | 106 | L106L | ctC | ctT | 5 | 5 | B.1.177.23 | 0.016181 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.237 | 0.024876 |
ORF3a | 106 | L106L | ctC | ctT | 5 | 5 | B.1.241 | 0.004058 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.36.16 | 0.007123 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | B.1.409 | 0.003906 |
ORF3a | 106 | L106R | cTc | cGc | 5 | 5 | B.1.411 | 0.018519 |
ORF3a | 106 | L106L | ctC | ctT | 5 | 5 | B.1.466.2 | 0.001956 |
ORF3a | 106 | L106del | CTC | --- | 5 | 5 | B.1.525 | 0.000566 |
ORF3a | 106 | L106L | ctC | ctT | 5 | 5 | B.1.595 | 0.001305 |
ORF3a | 106 | L106R | cTc | cGc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF3a | 106 | L106del | CTC | --- | 5 | 5 | B.1.621 | 0.000443 |
ORF3a | 106 | L106del | CTC | --- | 5 | 5 | D.2 | 0.000375 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | N.5 | 0.008834 |
ORF3a | 106 | L106F | Ctc | Ttc | 5 | 5 | Q.3 | 0.000725 |
ORF3a | 106 | L106P | cTc | cCc | 3 | 4 | 0.166667 | |
ORF3a | 106 | L106S | CTc | TCc | 3 | 4 | 0.166667 | |
ORF3a | 106 | L106R | cTc | cGc | 2 | 4 | 0.111111 | |
ORF3a | 106 | L106R | cTC | cGA | 2 | 4 | 0.111111 | |
ORF3a | 106 | L106S | CTC | TCT | 1 | 4 | 0.055556 | |
ORF3a | 106 | L106P | cTC | cCT | 1 | 4 | 0.055556 | |
ORF3a | 106 | L106del2 | CTc | --c | 3 | 4 | All | 0.000001 |
ORF3a | 106 | L106del1 | Ctc | -tc | 2 | 4 | All | 0 |
ORF3a | 106 | L106del1 | CtC | -tT | 2 | 4 | All | 0 |
ORF3a | 106 | L106del2 | CTC | --A | 1 | 4 | All | 0 |
ORF3a | 106 | L106V | Ctc | Gtc | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | AY.16 | 0.001519 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.16.1 | 0.00188 |
ORF3a | 106 | L106L | ctC | ctG | 2 | 4 | AY.16.1 | 0.00094 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 4 | AY.16.1 | 0.00094 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.27 | 0.000259 |
ORF3a | 106 | L106H | cTc | cAc | 4 | 4 | AY.29 | 0.000063 |
ORF3a | 106 | L106P | cTc | cCc | 4 | 4 | AY.3.1 | 0.000341 |
ORF3a | 106 | L106del | CTC | --- | 4 | 4 | AY.4.2 | 0.000087 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | AY.4.4 | 0.001637 |
ORF3a | 106 | L106I | Ctc | Atc | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.46.6 | 0.000289 |
ORF3a | 106 | L106P | cTc | cCc | 4 | 4 | AY.47 | 0.000124 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | AY.50 | 0.003197 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | AY.53 | 0.00115 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | AY.54 | 0.000381 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.68 | 0.001095 |
ORF3a | 106 | L106L | ctC | ctA | 2 | 4 | AY.7.1 | 0.000225 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 4 | AY.7.1 | 0.000225 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.75 | 0.000224 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.85 | 0.001709 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | AY.86 | 0.00332 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | AY.95 | 0.003044 |
ORF3a | 106 | L106P | cTc | cCc | 4 | 4 | AY.99.2 | 0.000369 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | AY.99.2 | 0.000369 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 4 | AY.99.2 | 0.000276 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 4 | AY.99.2 | 0.000092 |
ORF3a | 106 | L106P | cTc | cCc | 4 | 4 | B.1 | 0.000037 |
ORF3a | 106 | L106I | Ctc | Atc | 3 | 4 | B.1 | 0.000027 |
ORF3a | 106 | L106I | CtC | AtA | 1 | 4 | B.1 | 0.000009 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.1.221 | 0.040404 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.1.284 | 0.00043 |
ORF3a | 106 | L106V | Ctc | Gtc | 4 | 4 | B.1.1.348 | 0.003185 |
ORF3a | 106 | L106V | Ctc | Gtc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF3a | 106 | L106R | cTc | cGc | 4 | 4 | B.1.177 | 0.000053 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.54 | 0.002426 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.56 | 0.00267 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.73 | 0.002265 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.81 | 0.000757 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.177.86 | 0.000734 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | B.1.222 | 0.006768 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | B.1.234 | 0.000528 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.240 | 0.000862 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | B.1.260 | 0.013378 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.36.35 | 0.010417 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.369 | 0.001141 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | B.1.465 | 0.015209 |
ORF3a | 106 | L106R | cTc | cGc | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.574 | 0.008602 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.596 | 0.000349 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF3a | 106 | L106I | Ctc | Atc | 4 | 4 | B.1.621 | 0.000354 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | B.1.623 | 0.002146 |
ORF3a | 106 | L106V | Ctc | Gtc | 4 | 4 | B.1.637 | 0.000292 |
ORF3a | 106 | L106L | ctC | ctT | 4 | 4 | C.37 | 0.000464 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | N.3 | 0.023256 |
ORF3a | 106 | L106del | CTC | --- | 4 | 4 | P.1 | 0.000063 |
ORF3a | 106 | L106F | Ctc | Ttc | 4 | 4 | P.1.1 | 0.001271 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | A.2.4 | 0.010101 |
ORF3a | 106 | L106C | CTc | TGc | 3 | 3 | All | 0.000001 |
ORF3a | 106 | L106I | Ctc | Atc | 3 | 3 | AY.100 | 0.000138 |
ORF3a | 106 | L106H | cTc | cAc | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 106 | L106P | cTc | cCc | 3 | 3 | AY.103 | 0.000019 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.109 | 0.002219 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | AY.110 | 0.000338 |
ORF3a | 106 | L106P | cTc | cCc | 3 | 3 | AY.119 | 0.000106 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | AY.2 | 0.001068 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | AY.34.1 | 0.00153 |
ORF3a | 106 | L106P | cTc | cCc | 3 | 3 | AY.4.5 | 0.000322 |
ORF3a | 106 | L106P | cTc | cCc | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 106 | L106del | CTC | --- | 3 | 3 | AY.44 | 0.000018 |
ORF3a | 106 | L106del | CTC | --- | 3 | 3 | AY.47 | 0.000093 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | AY.48 | 0.001395 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.55 | 0.002752 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.7.1 | 0.000338 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.75.1 | 0.000541 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | AY.79 | 0.003632 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | AY.87 | 0.002498 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 3 | AY.92 | 0.000575 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 3 | AY.92 | 0.000287 |
ORF3a | 106 | L106I | Ctc | Atc | 3 | 3 | AY.98.1 | 0.000145 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | AY.99 | 0.003148 |
ORF3a | 106 | L106S | CTC | TCT | 2 | 3 | B.1.1 | 0.000036 |
ORF3a | 106 | L106P | cTc | cCc | 2 | 3 | B.1.1 | 0.000036 |
ORF3a | 106 | L106P | cTC | cCT | 1 | 3 | B.1.1 | 0.000018 |
ORF3a | 106 | L106S | CTc | TCc | 1 | 3 | B.1.1 | 0.000018 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.1.174 | 0.010135 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.1.176 | 0.001318 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.1.180 | 0.032258 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.1.231 | 0.009288 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.1.25 | 0.001706 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 3 | B.1.1.28 | 0.000622 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 3 | B.1.1.28 | 0.000311 |
ORF3a | 106 | L106H | cTc | cAc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 106 | L106del2 | CTc | --c | 3 | 3 | B.1.177 | 0.00004 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.177.87 | 0.002183 |
ORF3a | 106 | L106P | cTc | cCc | 3 | 3 | B.1.221 | 0.000213 |
ORF3a | 106 | L106P | cTc | cCc | 3 | 3 | B.1.258 | 0.0002 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 3 | B.1.301 | 0.011834 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 3 | B.1.301 | 0.005917 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.36.1 | 0.003421 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.36.22 | 0.003623 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.36.22 | 0.003623 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.396 | 0.002117 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.400 | 0.001287 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.470 | 0.004213 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.524 | 0.004219 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.525 | 0.000339 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.525 | 0.000339 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.555 | 0.066667 |
ORF3a | 106 | L106L | ctC | ctT | 3 | 3 | B.1.609 | 0.001438 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 106 | L106L | CtC | TtG | 1 | 3 | B.1.91 | 0.002075 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 3 | B.1.91 | 0.002075 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 3 | B.1.91 | 0.002075 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | C.1 | 0.007177 |
ORF3a | 106 | L106V | Ctc | Gtc | 3 | 3 | P.1 | 0.000047 |
ORF3a | 106 | L106del | CTC | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF3a | 106 | L106P | cTc | cCc | 3 | 3 | P.2 | 0.00056 |
ORF3a | 106 | L106F | Ctc | Ttc | 3 | 3 | Q.8 | 0.000495 |
ORF3a | 106 | L106R | cTc | cGc | 3 | 3 | R.1 | 0.00027 |
ORF3a | 106 | L106V | Ctc | Gtc | 2 | 2 | 0.111111 | |
ORF3a | 106 | L106X | CTC | TGA | 2 | 2 | 0.111111 | |
ORF3a | 106 | L106C | CTc | TGc | 2 | 2 | 0.111111 | |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | AE.8 | 0.000978 |
ORF3a | 106 | L106X | CTC | TGA | 2 | 2 | All | 0 |
ORF3a | 106 | L106G | CTc | GGc | 1 | 2 | All | 0 |
ORF3a | 106 | L106G | CTC | GGA | 1 | 2 | All | 0 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.10 | 0.00106 |
ORF3a | 106 | L106R | cTc | cGc | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.118 | 0.000125 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.121 | 0.000271 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.19 | 0.002281 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.24 | 0.000862 |
ORF3a | 106 | L106I | Ctc | Atc | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 106 | L106H | cTc | cAc | 2 | 2 | AY.3 | 0.00002 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | AY.30 | 0.000791 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 2 | AY.30 | 0.000396 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 2 | AY.30 | 0.000396 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | AY.32 | 0.001065 |
ORF3a | 106 | L106P | cTc | cCc | 2 | 2 | AY.36 | 0.000296 |
ORF3a | 106 | L106I | Ctc | Atc | 2 | 2 | AY.39 | 0.000049 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 106 | L106I | Ctc | Atc | 2 | 2 | AY.42 | 0.00008 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF3a | 106 | L106P | cTc | cCc | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | AY.5.4 | 0.000553 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.53 | 0.000575 |
ORF3a | 106 | L106R | cTc | cGc | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | AY.59 | 0.001059 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.72 | 0.002721 |
ORF3a | 106 | L106I | Ctc | Atc | 2 | 2 | AY.75 | 0.000112 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.84 | 0.000875 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | AY.85 | 0.000854 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | AY.93 | 0.000546 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | AY.98.1 | 0.000097 |
ORF3a | 106 | L106H | cTc | cAc | 2 | 2 | B.1 | 0.000018 |
ORF3a | 106 | L106R | cTc | cGc | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.141 | 0.004024 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.161 | 0.007067 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.198 | 0.002937 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.1.226 | 0.011628 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.1.249 | 0.142857 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.277 | 0.001517 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | B.1.1.298 | 0.001724 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.1.3 | 0.017391 |
ORF3a | 106 | L106V | CtC | GtG | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.1.332 | 0.0625 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.354 | 0.008772 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.1.404 | 0.031746 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.63 | 0.000772 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF3a | 106 | L106F | CtC | TtT | 2 | 2 | B.1.14 | 0.035088 |
ORF3a | 106 | L106del1 | CtC | -tT | 2 | 2 | B.1.160 | 0.000062 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.177.26 | 0.013986 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 2 | B.1.177.32 | 0.00135 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 2 | B.1.177.32 | 0.00135 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.177.5 | 0.002484 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.177.50 | 0.00939 |
ORF3a | 106 | L106P | cTc | cCc | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.177.7 | 0.00033 |
ORF3a | 106 | L106R | cTc | cGc | 2 | 2 | B.1.177.77 | 0.001452 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF3a | 106 | L106V | Ctc | Gtc | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.206 | 0.001631 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.221.2 | 0.008032 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.258.2 | 0.009009 |
ORF3a | 106 | L106H | cTc | cAc | 2 | 2 | B.1.279 | 0.001027 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 106 | L106R | cTc | cGc | 2 | 2 | B.1.36.18 | 0.00084 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.36.35 | 0.005208 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.367 | 0.001585 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.375 | 0.001639 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.395 | 0.014085 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.399 | 0.003868 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.417 | 0.057143 |
ORF3a | 106 | L106P | cTc | cCc | 2 | 2 | B.1.436 | 0.002058 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.456 | 0.006536 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.459 | 0.008163 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.459 | 0.008163 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.462 | 0.014493 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.470 | 0.002809 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.471 | 0.005464 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.497 | 0.00063 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.499 | 0.002101 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.499 | 0.002101 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.533 | 0.019231 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 2 | B.1.533 | 0.009615 |
ORF3a | 106 | L106I | CtC | AtT | 1 | 2 | B.1.533 | 0.009615 |
ORF3a | 106 | L106del | CTC | --- | 2 | 2 | B.1.582 | 0.000981 |
ORF3a | 106 | L106P | cTc | cCc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF3a | 106 | L106S | CTC | TCT | 2 | 2 | B.1.617.2 | 0.000008 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.617.3 | 0.00597 |
ORF3a | 106 | L106S | CTc | TCc | 2 | 2 | B.1.621 | 0.000177 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.621.1 | 0.001012 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.625 | 0.004706 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | B.1.628 | 0.000705 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.1.633 | 0.083333 |
ORF3a | 106 | L106G | CTc | GGc | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106S | CTc | TCc | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106G | CTC | GGA | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106V | CtC | GtA | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106R | cTC | cGA | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106P | cTC | cCG | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106S | CTC | TCG | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.3 | 0.001661 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | B.4.7 | 0.020202 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 2 | B.6.6 | 0.000889 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 2 | B.6.6 | 0.000889 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | C.36.3 | 0.001134 |
ORF3a | 106 | L106S | CTC | TCT | 2 | 2 | D.2 | 0.00015 |
ORF3a | 106 | L106P | cTc | cCc | 2 | 2 | P.1 | 0.000032 |
ORF3a | 106 | L106L | ctC | ctT | 2 | 2 | P.1.1 | 0.000635 |
ORF3a | 106 | L106P | cTc | cCc | 2 | 2 | P.1.7 | 0.000639 |
ORF3a | 106 | L106F | Ctc | Ttc | 2 | 2 | Q.2 | 0.001227 |
ORF3a | 106 | L106P | cTc | cCc | 2 | 2 | Q.8 | 0.00033 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | A | 0.000387 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | A | 0.000387 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | A | 0.000387 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | A | 0.000387 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | A.1 | 0.000282 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | A.11 | 0.058824 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | A.19 | 0.009434 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | A.23 | 0.010526 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AE.8 | 0.000489 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AF.1 | 0.037037 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 106 | L106Y | CTc | TAc | 1 | 1 | All | 0 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AN.1 | 0.02 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AP.1 | 0.001502 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AQ.1 | 0.071429 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AU.3 | 0.00211 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 106 | L106del1 | Ctc | -tc | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.102 | 0.000027 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 106 | L106H | cTc | cAc | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.109 | 0.00074 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.115 | 0.005208 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.118 | 0.000063 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.15 | 0.002222 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.19 | 0.00114 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.25 | 0.000006 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.26 | 0.000028 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.3 | 0.00001 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.38 | 0.000499 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 1 | AY.4.2 | 0.000022 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.40 | 0.000964 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.42 | 0.00004 |
ORF3a | 106 | L106S | CTc | TCc | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | AY.47 | 0.000031 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.49 | 0.003195 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | AY.5 | 0.000021 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.57 | 0.000656 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.60 | 0.000938 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.70 | 0.000209 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.71 | 0.000475 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | AY.75 | 0.000056 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.76 | 0.004831 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.78 | 0.001541 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.8 | 0.000606 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.80 | 0.001129 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.82 | 0.001357 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AY.96 | 0.002075 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | AZ.5 | 0.003509 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | B | 0.000128 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B | 0.000128 |
ORF3a | 106 | L106S | CTc | TCc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | B.1 | 0.000009 |
ORF3a | 106 | L106del2 | CTC | --A | 1 | 1 | B.1 | 0.000009 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 106 | L106Y | CTc | TAc | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.1.117 | 0.009709 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.157 | 0.000913 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.164 | 0.005155 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.210 | 0.005714 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.219 | 0.005 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.227 | 0.004348 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.297 | 0.002237 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 106 | L106C | CTc | TGc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.343 | 0.020833 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.351 | 0.002793 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.373 | 0.02381 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.377 | 0.001381 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.389 | 0.006061 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.1.410 | 0.037037 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.411 | 0.014706 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.433 | 0.001425 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.507 | 0.008696 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.518 | 0.006329 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.1.54 | 0.003021 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.77 | 0.041667 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.83 | 0.00271 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.88 | 0.071429 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.1.89 | 0.006061 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.111 | 0.001175 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.117 | 0.0125 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.124 | 0.007812 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | B.1.126 | 0.001276 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.127 | 0.002198 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.128 | 0.000635 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.146 | 0.004237 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 1 | B.1.177.20 | 0.001517 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.33 | 0.001645 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.43 | 0.001477 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | B.1.177.69 | 0.001484 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.177.79 | 0.002342 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.192 | 0.009259 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.199 | 0.004132 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.214 | 0.003663 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | B.1.221 | 0.000071 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.221.3 | 0.000833 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.235 | 0.002519 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.237 | 0.004975 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.241 | 0.000812 |
ORF3a | 106 | L106H | cTc | cAc | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 106 | L106del1 | Ctc | -tc | 1 | 1 | B.1.258.10 | 0.011364 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.260 | 0.003344 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.268 | 0.010417 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.279 | 0.000514 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.333 | 0.010526 |
ORF3a | 106 | L106I | CtC | AtT | 1 | 1 | B.1.333 | 0.010526 |
ORF3a | 106 | L106F | CtC | TtT | 1 | 1 | B.1.333 | 0.010526 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.340 | 0.004292 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.349 | 0.000715 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.36.25 | 0.002208 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.36.39 | 0.002217 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.369 | 0.000285 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.377 | 0.004566 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.380 | 0.006623 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.381 | 0.007812 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.398 | 0.002976 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.408 | 0.00369 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.416 | 0.001269 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.423 | 0.010204 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.432 | 0.011236 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.452 | 0.013699 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.462 | 0.007246 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.466 | 0.023256 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.468 | 0.005714 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.474 | 0.001901 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.478 | 0.011765 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.485 | 0.014925 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.491 | 0.052632 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.498 | 0.020408 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.503 | 0.002488 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.511 | 0.034483 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.547 | 0.02439 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.567 | 0.003333 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.587 | 0.001898 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.589 | 0.007576 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.590 | 0.004545 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.597 | 0.00463 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.600 | 0.005848 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 106 | L106R | cTc | cGc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 106 | L106L | ctC | ctA | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.634 | 0.003425 |
ORF3a | 106 | L106H | cTc | cAc | 1 | 1 | B.1.637 | 0.000073 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.1.78 | 0.008547 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.3.1 | 0.001658 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | B.3.1 | 0.001658 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.4 | 0.002208 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | B.40 | 0.000364 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.55 | 0.00295 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | B.6.8 | 0.008264 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | C.12 | 0.007194 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | C.34 | 0.037037 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | C.37 | 0.000116 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | C.37 | 0.000116 |
ORF3a | 106 | L106V | Ctc | Gtc | 1 | 1 | C.6 | 0.037037 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | N.2 | 0.038462 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | N.4 | 0.004255 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 106 | L106H | cTc | cAc | 1 | 1 | P.1 | 0.000016 |
ORF3a | 106 | L106I | Ctc | Atc | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | P.1.10 | 0.000269 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | P.1.13 | 0.000898 |
ORF3a | 106 | L106P | cTc | cCc | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | P.1.2 | 0.001156 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 106 | L106L | ctC | ctT | 1 | 1 | P.3 | 0.001595 |
ORF3a | 106 | L106L | ctC | ctG | 1 | 1 | P.6 | 0.003145 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 106 | L106F | Ctc | Ttc | 1 | 1 | R.1 | 0.00009 |
ORF3a | 106 | L106del | CTC | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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