CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 104 | P104S | nonsyn | Cct | Tct | 32762 | 32757 | 0.999847 | 25702-25704 | |
ORF3a | 104 | P104S | nonsyn | CcT | TcA | 32762 | 2 | 0.0000610463 | 25702-25704 | |
ORF3a | 104 | P104S | nonsyn | CcT | TcC | 32762 | 2 | 0.0000610463 | 25702-25704 | |
ORF3a | 104 | P104S | nonsyn | CcT | TcG | 32762 | 1 | 0.0000305232 | 25702-25704 | |
ORF3a | 104 | P104L | nonsyn | cCt | cTt | 14679 | 14665 | 0.999046 | 25702-25704 | |
ORF3a | 104 | P104L | nonsyn | cCT | cTC | 14679 | 7 | 0.000476872 | 25702-25704 | |
ORF3a | 104 | P104L | nonsyn | cCT | cTA | 14679 | 3 | 0.000204374 | 25702-25704 | |
ORF3a | 104 | P104L | nonsyn | CCT | TTA | 14679 | 2 | 0.000136249 | 25702-25704 | |
ORF3a | 104 | P104L | nonsyn | cCT | cTG | 14679 | 2 | 0.000136249 | 25702-25704 | |
ORF3a | 104 | P104F | nonsyn | CCt | TTt | 2449 | 2448 | 0.999592 | 25702-25704 | |
ORF3a | 104 | P104F | nonsyn | CCT | TTC | 2449 | 1 | 0.00040833 | 25702-25704 | |
ORF3a | 104 | P104P | syn | ccT | ccG | 1144 | 856 | 0.748252 | 25702-25704 | |
ORF3a | 104 | P104P | syn | ccT | ccC | 1144 | 268 | 0.234266 | 25702-25704 | |
ORF3a | 104 | P104P | syn | ccT | ccA | 1144 | 20 | 0.0174825 | 25702-25704 | |
ORF3a | 104 | P104H | nonsyn | cCt | cAt | 190 | 189 | 0.994737 | 25702-25704 | |
ORF3a | 104 | P104H | nonsyn | cCT | cAC | 190 | 1 | 0.00526316 | 25702-25704 | |
ORF3a | 104 | P104T | nonsyn | Cct | Act | 154 | 152 | 0.987013 | 25702-25704 | |
ORF3a | 104 | P104T | nonsyn | CcT | AcG | 154 | 1 | 0.00649351 | 25702-25704 | |
ORF3a | 104 | P104T | nonsyn | CcT | AcC | 154 | 1 | 0.00649351 | 25702-25704 | |
ORF3a | 104 | P104del | del | CCT | --- | 141 | 141 | 1 | 25702-25704 | |
ORF3a | 104 | P104R | nonsyn | cCt | cGt | 58 | 58 | 1 | 25702-25704 | |
ORF3a | 104 | P104A | nonsyn | Cct | Gct | 25 | 21 | 0.84 | 25702-25704 | |
ORF3a | 104 | P104A | nonsyn | CcT | GcC | 25 | 3 | 0.12 | 25702-25704 | |
ORF3a | 104 | P104A | nonsyn | CcT | GcA | 25 | 1 | 0.04 | 25702-25704 | |
ORF3a | 104 | P104del1 | del | ccT | cc- | 14 | 14 | 1 | 25702-25704 | |
ORF3a | 104 | P104del2 | del | cCT | c-- | 5 | 4 | 0.8 | 25702-25704 | |
ORF3a | 104 | P104del2 | del | CCt | --t | 5 | 1 | 0.2 | 25702-25704 | |
ORF3a | 104 | P104C | nonsyn | CCt | TGt | 4 | 4 | 1 | 25702-25704 | |
ORF3a | 104 | P104I | nonsyn | CCt | ATt | 2 | 1 | 0.5 | 25702-25704 | |
ORF3a | 104 | P104I | nonsyn | CCT | ATC | 2 | 1 | 0.5 | 25702-25704 | |
ORF3a | 104 | P104K | nonsyn | CCT | AAG | 1 | 1 | 1 | 25702-25704 | |
ORF3a | 104 | P104N | nonsyn | CCt | AAt | 1 | 1 | 1 | 25702-25704 | |
ORF3a | 104 | P104Q | nonsyn | cCT | cAA | 1 | 1 | 1 | 25702-25704 | |
ORF3a | 104 | P104X | nonsyn | CCT | TAG | 1 | 1 | 1 | 25702-25704 | |
ORF3a | 104 | P104D | nonsyn | CCt | GAt | 1 | 1 | 1 | 25702-25704 | |
ORF3a | 104 | P104W | nonsyn | CCT | TGG | 1 | 1 | 1 | 25702-25704 | |
ORF3a | 104 | P104Y | nonsyn | CCt | TAt | 1 | 1 | 1 | 25702-25704 | |
ORF3a | 104 | P104V | nonsyn | CCt | GTt | 1 | 1 | 1 | 25702-25704 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 104 | P104S | Cct | Tct | 32757 | 32762 | All | 0.006265 |
ORF3a | 104 | P104S | CcT | TcC | 2 | 32762 | All | 0 |
ORF3a | 104 | P104S | CcT | TcA | 2 | 32762 | All | 0 |
ORF3a | 104 | P104S | CcT | TcG | 1 | 32762 | All | 0 |
ORF3a | 104 | P104S | Cct | Tct | 24446 | 24446 | AY.103 | 0.151787 |
ORF3a | 104 | P104L | cCt | cTt | 14665 | 14679 | All | 0.002805 |
ORF3a | 104 | P104L | cCT | cTC | 7 | 14679 | All | 0.000001 |
ORF3a | 104 | P104L | cCT | cTA | 3 | 14679 | All | 0.000001 |
ORF3a | 104 | P104L | cCT | cTG | 2 | 14679 | All | 0 |
ORF3a | 104 | P104L | CCT | TTA | 2 | 14679 | All | 0 |
ORF3a | 104 | P104L | cCt | cTt | 8482 | 8488 | B.1.637 | 0.619803 |
ORF3a | 104 | P104L | cCT | cTC | 6 | 8488 | B.1.637 | 0.000438 |
ORF3a | 104 | P104S | Cct | Tct | 2653 | 2653 | B.1.1.7 | 0.002375 |
ORF3a | 104 | P104F | CCt | TTt | 2448 | 2449 | All | 0.000468 |
ORF3a | 104 | P104F | CCT | TTC | 1 | 2449 | All | 0 |
ORF3a | 104 | P104S | Cct | Tct | 2265 | 2265 | AY.24 | 0.976293 |
ORF3a | 104 | P104F | CCt | TTt | 2177 | 2177 | B.1.637 | 0.159079 |
ORF3a | 104 | P104L | cCt | cTt | 1500 | 1500 | B.1.526 | 0.035257 |
ORF3a | 104 | P104S | Cct | Tct | 1392 | 1392 | B.1.617.2 | 0.005241 |
ORF3a | 104 | P104L | cCt | cTt | 1155 | 1155 | B.1.1.7 | 0.001034 |
ORF3a | 104 | P104P | ccT | ccG | 856 | 1144 | All | 0.000164 |
ORF3a | 104 | P104P | ccT | ccC | 268 | 1144 | All | 0.000051 |
ORF3a | 104 | P104P | ccT | ccA | 20 | 1144 | All | 0.000004 |
ORF3a | 104 | P104S | Cct | Tct | 528 | 528 | AY.4 | 0.000822 |
ORF3a | 104 | P104L | cCt | cTt | 463 | 463 | AY.4 | 0.000721 |
ORF3a | 104 | P104L | cCt | cTt | 458 | 459 | B.1 | 0.004195 |
ORF3a | 104 | P104L | cCT | cTA | 1 | 459 | B.1 | 0.000009 |
ORF3a | 104 | P104P | ccT | ccG | 330 | 338 | AY.4 | 0.000514 |
ORF3a | 104 | P104P | ccT | ccC | 8 | 338 | AY.4 | 0.000012 |
ORF3a | 104 | P104L | cCt | cTt | 297 | 297 | B.1.1.4 | 0.883929 |
ORF3a | 104 | P104P | ccT | ccG | 190 | 244 | B.1.1.7 | 0.00017 |
ORF3a | 104 | P104P | ccT | ccC | 52 | 244 | B.1.1.7 | 0.000047 |
ORF3a | 104 | P104P | ccT | ccA | 2 | 244 | B.1.1.7 | 0.000002 |
ORF3a | 104 | P104L | cCt | cTt | 231 | 231 | B.1.177 | 0.003042 |
ORF3a | 104 | P104L | cCt | cTt | 214 | 214 | AY.44 | 0.001303 |
ORF3a | 104 | P104H | cCt | cAt | 189 | 190 | All | 0.000036 |
ORF3a | 104 | P104H | cCT | cAC | 1 | 190 | All | 0 |
ORF3a | 104 | P104F | CCt | TTt | 163 | 163 | AY.103 | 0.001012 |
ORF3a | 104 | P104L | cCt | cTt | 158 | 158 | AY.25 | 0.00095 |
ORF3a | 104 | P104S | Cct | Tct | 156 | 156 | AY.108 | 0.171996 |
ORF3a | 104 | P104T | Cct | Act | 152 | 154 | All | 0.000029 |
ORF3a | 104 | P104T | CcT | AcG | 1 | 154 | All | 0 |
ORF3a | 104 | P104T | CcT | AcC | 1 | 154 | All | 0 |
ORF3a | 104 | P104del | CCT | --- | 141 | 141 | All | 0.000027 |
ORF3a | 104 | P104S | Cct | Tct | 141 | 141 | AY.6 | 0.005799 |
ORF3a | 104 | P104L | cCt | cTt | 139 | 139 | B.1.617.2 | 0.000523 |
ORF3a | 104 | P104L | cCt | cTt | 91 | 91 | B.1.2 | 0.000801 |
ORF3a | 104 | P104S | Cct | Tct | 89 | 89 | AY.43 | 0.000394 |
ORF3a | 104 | P104L | cCt | cTt | 88 | 88 | P.1 | 0.001386 |
ORF3a | 104 | P104S | Cct | Tct | 87 | 87 | AY.25 | 0.000523 |
ORF3a | 104 | P104S | Cct | Tct | 85 | 85 | B.1.258 | 0.005656 |
ORF3a | 104 | P104L | cCt | cTt | 85 | 85 | B.1.429 | 0.002 |
ORF3a | 104 | P104S | Cct | Tct | 82 | 82 | B.1 | 0.000751 |
ORF3a | 104 | P104S | Cct | Tct | 74 | 74 | B.1.2 | 0.000652 |
ORF3a | 104 | P104F | CCt | TTt | 71 | 71 | B.1 | 0.00065 |
ORF3a | 104 | P104L | cCt | cTt | 66 | 66 | AY.43 | 0.000292 |
ORF3a | 104 | P104R | cCt | cGt | 58 | 58 | All | 0.000011 |
ORF3a | 104 | P104S | Cct | Tct | 54 | 54 | AY.44 | 0.000329 |
ORF3a | 104 | P104L | cCt | cTt | 47 | 47 | B.1.1.353 | 0.979167 |
ORF3a | 104 | P104L | cCt | cTt | 47 | 47 | B.1.177.60 | 0.010266 |
ORF3a | 104 | P104L | cCt | cTt | 44 | 44 | AY.3 | 0.000438 |
ORF3a | 104 | P104S | Cct | Tct | 44 | 44 | B.1.160 | 0.001372 |
ORF3a | 104 | P104L | cCt | cTt | 44 | 44 | B.1.221 | 0.003125 |
ORF3a | 104 | P104H | cCt | cAt | 41 | 41 | AY.6 | 0.001686 |
ORF3a | 104 | P104L | cCt | cTt | 41 | 41 | B.1.1 | 0.000744 |
ORF3a | 104 | P104P | ccT | ccG | 38 | 40 | P.1 | 0.000599 |
ORF3a | 104 | P104P | ccT | ccC | 2 | 40 | P.1 | 0.000032 |
ORF3a | 104 | P104L | cCt | cTt | 39 | 39 | B.1.1.486 | 0.061514 |
ORF3a | 104 | P104P | ccT | ccC | 34 | 37 | AY.34 | 0.003297 |
ORF3a | 104 | P104P | ccT | ccG | 3 | 37 | AY.34 | 0.000291 |
ORF3a | 104 | P104del | CCT | --- | 37 | 37 | B.1.1.7 | 0.000033 |
ORF3a | 104 | P104L | cCt | cTt | 34 | 34 | AY.103 | 0.000211 |
ORF3a | 104 | P104S | Cct | Tct | 34 | 34 | AY.33 | 0.00227 |
ORF3a | 104 | P104H | cCt | cAt | 34 | 34 | AY.4 | 0.000053 |
ORF3a | 104 | P104P | ccT | ccG | 33 | 33 | AY.46.6 | 0.002383 |
ORF3a | 104 | P104S | Cct | Tct | 33 | 33 | B.1.177 | 0.000435 |
ORF3a | 104 | P104P | ccT | ccG | 19 | 31 | B.1.617.2 | 0.000072 |
ORF3a | 104 | P104P | ccT | ccC | 6 | 31 | B.1.617.2 | 0.000023 |
ORF3a | 104 | P104P | ccT | ccA | 6 | 31 | B.1.617.2 | 0.000023 |
ORF3a | 104 | P104L | cCt | cTt | 30 | 30 | AY.102 | 0.000795 |
ORF3a | 104 | P104T | Cct | Act | 29 | 29 | AY.39 | 0.000717 |
ORF3a | 104 | P104L | cCt | cTt | 29 | 29 | P.1.14 | 0.001386 |
ORF3a | 104 | P104L | cCt | cTt | 27 | 27 | B.1.177.4 | 0.005699 |
ORF3a | 104 | P104L | cCt | cTt | 27 | 27 | B.1.525 | 0.003055 |
ORF3a | 104 | P104S | Cct | Tct | 26 | 26 | AY.117 | 0.002197 |
ORF3a | 104 | P104S | Cct | Tct | 26 | 26 | C.37 | 0.003018 |
ORF3a | 104 | P104L | cCt | cTt | 26 | 26 | D.2 | 0.001951 |
ORF3a | 104 | P104S | Cct | Tct | 26 | 26 | P.1 | 0.00041 |
ORF3a | 104 | P104A | Cct | Gct | 21 | 25 | All | 0.000004 |
ORF3a | 104 | P104A | CcT | GcC | 3 | 25 | All | 0.000001 |
ORF3a | 104 | P104A | CcT | GcA | 1 | 25 | All | 0 |
ORF3a | 104 | P104L | cCt | cTt | 25 | 25 | AY.20 | 0.000972 |
ORF3a | 104 | P104S | Cct | Tct | 24 | 24 | AY.3 | 0.000239 |
ORF3a | 104 | P104H | cCt | cAt | 23 | 23 | AY.103 | 0.000143 |
ORF3a | 104 | P104L | cCt | cTt | 23 | 23 | AY.120.2.1 | 0.01146 |
ORF3a | 104 | P104P | ccT | ccC | 13 | 23 | AY.43 | 0.000058 |
ORF3a | 104 | P104P | ccT | ccG | 10 | 23 | AY.43 | 0.000044 |
ORF3a | 104 | P104R | cCt | cGt | 23 | 23 | B.1.1.7 | 0.000021 |
ORF3a | 104 | P104L | cCt | cTt | 22 | 22 | AY.39 | 0.000544 |
ORF3a | 104 | P104L | cCt | cTt | 22 | 22 | AY.61 | 0.002305 |
ORF3a | 104 | P104L | cCt | cTt | 22 | 22 | B.1.320 | 0.027397 |
ORF3a | 104 | P104L | cCt | cTt | 20 | 20 | B.1.1.519 | 0.000794 |
ORF3a | 104 | P104L | cCt | cTt | 20 | 20 | B.1.351 | 0.000595 |
ORF3a | 104 | P104L | cCt | cTt | 19 | 19 | AY.100 | 0.000874 |
ORF3a | 104 | P104L | cCt | cTt | 18 | 18 | AY.120 | 0.000669 |
ORF3a | 104 | P104P | ccT | ccC | 11 | 18 | AY.44 | 0.000067 |
ORF3a | 104 | P104P | ccT | ccG | 7 | 18 | AY.44 | 0.000043 |
ORF3a | 104 | P104P | ccT | ccG | 10 | 17 | AY.4.2 | 0.000217 |
ORF3a | 104 | P104P | ccT | ccC | 7 | 17 | AY.4.2 | 0.000152 |
ORF3a | 104 | P104L | cCt | cTt | 16 | 16 | AY.106 | 0.005358 |
ORF3a | 104 | P104P | ccT | ccC | 10 | 16 | AY.25 | 0.00006 |
ORF3a | 104 | P104P | ccT | ccG | 6 | 16 | AY.25 | 0.000036 |
ORF3a | 104 | P104S | Cct | Tct | 16 | 16 | B.1.1 | 0.00029 |
ORF3a | 104 | P104P | ccT | ccC | 14 | 16 | B.1.177 | 0.000184 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 16 | B.1.177 | 0.000026 |
ORF3a | 104 | P104T | Cct | Act | 16 | 16 | R.1 | 0.00144 |
ORF3a | 104 | P104L | cCt | cTt | 15 | 15 | B.1.1.302 | 0.03112 |
ORF3a | 104 | P104L | cCt | cTt | 15 | 15 | B.1.160 | 0.000468 |
ORF3a | 104 | P104P | ccT | ccG | 15 | 15 | B.1.526 | 0.000353 |
ORF3a | 104 | P104P | ccT | ccG | 12 | 15 | B.1.621 | 0.001062 |
ORF3a | 104 | P104P | ccT | ccC | 3 | 15 | B.1.621 | 0.000266 |
ORF3a | 104 | P104S | Cct | Tct | 15 | 15 | Q.8 | 0.002474 |
ORF3a | 104 | P104del1 | ccT | cc- | 14 | 14 | All | 0.000003 |
ORF3a | 104 | P104L | cCt | cTt | 14 | 14 | AY.119 | 0.000494 |
ORF3a | 104 | P104L | cCt | cTt | 14 | 14 | AY.29 | 0.000221 |
ORF3a | 104 | P104P | ccT | ccG | 11 | 14 | AY.3 | 0.000109 |
ORF3a | 104 | P104P | ccT | ccC | 3 | 14 | AY.3 | 0.00003 |
ORF3a | 104 | P104P | ccT | ccC | 10 | 14 | B.1.1 | 0.000181 |
ORF3a | 104 | P104P | ccT | ccA | 2 | 14 | B.1.1 | 0.000036 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 14 | B.1.1 | 0.000036 |
ORF3a | 104 | P104L | cCt | cTt | 14 | 14 | B.1.177.7 | 0.002308 |
ORF3a | 104 | P104L | cCt | cTt | 14 | 14 | P.2 | 0.002613 |
ORF3a | 104 | P104S | Cct | Tct | 13 | 13 | AY.20 | 0.000505 |
ORF3a | 104 | P104L | cCt | cTt | 13 | 13 | AY.84 | 0.005687 |
ORF3a | 104 | P104T | Cct | Act | 13 | 13 | B.1.177 | 0.000171 |
ORF3a | 104 | P104del | CCT | --- | 13 | 13 | B.1.177 | 0.000171 |
ORF3a | 104 | P104A | Cct | Gct | 13 | 13 | B.1.2 | 0.000114 |
ORF3a | 104 | P104L | cCt | cTt | 13 | 13 | C.16 | 0.013786 |
ORF3a | 104 | P104T | Cct | Act | 12 | 12 | AY.25 | 0.000072 |
ORF3a | 104 | P104L | cCt | cTt | 12 | 12 | AY.26 | 0.00034 |
ORF3a | 104 | P104S | Cct | Tct | 12 | 12 | AY.62 | 0.005229 |
ORF3a | 104 | P104L | cCt | cTt | 12 | 12 | B | 0.001534 |
ORF3a | 104 | P104del | CCT | --- | 12 | 12 | B.1 | 0.00011 |
ORF3a | 104 | P104L | cCt | cTt | 12 | 12 | B.1.36.36 | 0.007225 |
ORF3a | 104 | P104P | ccT | ccG | 12 | 12 | Q.3 | 0.00174 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 11 | 0.277778 | |
ORF3a | 104 | P104L | CCT | TTA | 2 | 11 | 0.111111 | |
ORF3a | 104 | P104L | cCT | cTG | 2 | 11 | 0.111111 | |
ORF3a | 104 | P104L | cCT | cTA | 2 | 11 | 0.111111 | |
ORF3a | 104 | P104S | Cct | Tct | 11 | 11 | AY.26 | 0.000311 |
ORF3a | 104 | P104S | Cct | Tct | 11 | 11 | AY.5 | 0.000227 |
ORF3a | 104 | P104P | ccT | ccG | 11 | 11 | AY.98 | 0.000869 |
ORF3a | 104 | P104L | cCt | cTt | 11 | 11 | B.1.1.214 | 0.00061 |
ORF3a | 104 | P104H | cCt | cAt | 11 | 11 | B.1.1.7 | 0.00001 |
ORF3a | 104 | P104S | Cct | Tct | 11 | 11 | B.1.258.17 | 0.001144 |
ORF3a | 104 | P104S | Cct | Tct | 11 | 11 | B.1.596 | 0.000959 |
ORF3a | 104 | P104P | ccT | ccG | 11 | 11 | P.1.10 | 0.002964 |
ORF3a | 104 | P104P | ccT | ccG | 6 | 10 | AY.103 | 0.000037 |
ORF3a | 104 | P104P | ccT | ccC | 4 | 10 | AY.103 | 0.000025 |
ORF3a | 104 | P104L | cCt | cTt | 10 | 10 | AY.54 | 0.000953 |
ORF3a | 104 | P104T | Cct | Act | 10 | 10 | B.1.2 | 0.000088 |
ORF3a | 104 | P104S | Cct | Tct | 10 | 10 | B.1.637 | 0.000731 |
ORF3a | 104 | P104S | Cct | Tct | 10 | 10 | Q.1 | 0.001263 |
ORF3a | 104 | P104P | ccT | ccG | 9 | 9 | AY.111 | 0.001648 |
ORF3a | 104 | P104P | ccT | ccG | 9 | 9 | AY.120 | 0.000335 |
ORF3a | 104 | P104P | ccT | ccG | 9 | 9 | AY.13 | 0.001449 |
ORF3a | 104 | P104S | Cct | Tct | 9 | 9 | AY.23 | 0.000628 |
ORF3a | 104 | P104H | cCt | cAt | 9 | 9 | AY.29 | 0.000142 |
ORF3a | 104 | P104S | Cct | Tct | 9 | 9 | AY.37 | 0.002845 |
ORF3a | 104 | P104L | cCt | cTt | 9 | 9 | AY.6 | 0.00037 |
ORF3a | 104 | P104P | ccT | ccC | 6 | 9 | AY.6 | 0.000247 |
ORF3a | 104 | P104P | ccT | ccG | 3 | 9 | AY.6 | 0.000123 |
ORF3a | 104 | P104P | ccT | ccC | 7 | 9 | B.1 | 0.000064 |
ORF3a | 104 | P104P | ccT | ccA | 2 | 9 | B.1 | 0.000018 |
ORF3a | 104 | P104T | Cct | Act | 9 | 9 | B.1.1.7 | 0.000008 |
ORF3a | 104 | P104L | cCt | cTt | 9 | 9 | B.1.177.53 | 0.021531 |
ORF3a | 104 | P104L | cCt | cTt | 9 | 9 | B.1.234 | 0.001187 |
ORF3a | 104 | P104S | Cct | Tct | 9 | 9 | B.1.264.1 | 0.428571 |
ORF3a | 104 | P104S | Cct | Tct | 9 | 9 | B.1.351 | 0.000268 |
ORF3a | 104 | P104S | Cct | Tct | 9 | 9 | B.1.427 | 0.000454 |
ORF3a | 104 | P104L | cCt | cTt | 8 | 8 | AU.1 | 0.010127 |
ORF3a | 104 | P104S | Cct | Tct | 8 | 8 | AY.118 | 0.000501 |
ORF3a | 104 | P104P | ccT | ccG | 8 | 8 | AY.2 | 0.002849 |
ORF3a | 104 | P104H | cCt | cAt | 8 | 8 | AY.25 | 0.000048 |
ORF3a | 104 | P104L | cCt | cTt | 8 | 8 | AY.5 | 0.000165 |
ORF3a | 104 | P104P | ccT | ccG | 8 | 8 | AY.5 | 0.000165 |
ORF3a | 104 | P104S | Cct | Tct | 8 | 8 | AY.9 | 0.000541 |
ORF3a | 104 | P104F | CCt | TTt | 8 | 8 | B.1.1.189 | 0.012103 |
ORF3a | 104 | P104S | Cct | Tct | 8 | 8 | B.1.1.519 | 0.000318 |
ORF3a | 104 | P104S | Cct | Tct | 8 | 8 | B.1.237 | 0.039801 |
ORF3a | 104 | P104S | Cct | Tct | 8 | 8 | B.1.621 | 0.000708 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 7 | 0.222222 | |
ORF3a | 104 | P104S | CcT | TcA | 2 | 7 | 0.111111 | |
ORF3a | 104 | P104S | CcT | TcC | 1 | 7 | 0.055556 | |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | AY.117 | 0.000592 |
ORF3a | 104 | P104S | Cct | Tct | 7 | 7 | AY.119 | 0.000247 |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | AY.39.1 | 0.000277 |
ORF3a | 104 | P104H | cCt | cAt | 7 | 7 | AY.44 | 0.000043 |
ORF3a | 104 | P104S | Cct | Tct | 7 | 7 | AY.45 | 0.000852 |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | AY.46 | 0.000729 |
ORF3a | 104 | P104P | ccT | ccC | 5 | 7 | AY.47 | 0.000156 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 7 | AY.47 | 0.000062 |
ORF3a | 104 | P104S | Cct | Tct | 7 | 7 | B.1.1.25 | 0.00398 |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | B.1.1.525 | 0.038251 |
ORF3a | 104 | P104T | Cct | Act | 7 | 7 | B.1.351 | 0.000208 |
ORF3a | 104 | P104T | Cct | Act | 7 | 7 | B.1.429 | 0.000165 |
ORF3a | 104 | P104S | Cct | Tct | 7 | 7 | B.1.429 | 0.000165 |
ORF3a | 104 | P104S | Cct | Tct | 7 | 7 | B.1.526 | 0.000165 |
ORF3a | 104 | P104H | cCt | cAt | 7 | 7 | B.1.617.2 | 0.000026 |
ORF3a | 104 | P104L | cCt | cTt | 7 | 7 | B.1.636 | 0.04698 |
ORF3a | 104 | P104P | ccT | ccG | 6 | 6 | AY.75 | 0.000336 |
ORF3a | 104 | P104L | cCt | cTt | 6 | 6 | AY.75 | 0.000336 |
ORF3a | 104 | P104L | cCt | cTt | 6 | 6 | AZ.3 | 0.009119 |
ORF3a | 104 | P104S | Cct | Tct | 6 | 6 | B.1.1.216 | 0.005343 |
ORF3a | 104 | P104L | cCt | cTt | 6 | 6 | B.1.1.507 | 0.052174 |
ORF3a | 104 | P104P | ccT | ccC | 6 | 6 | B.1.243 | 0.000418 |
ORF3a | 104 | P104R | cCt | cGt | 6 | 6 | B.1.351 | 0.000178 |
ORF3a | 104 | P104S | Cct | Tct | 6 | 6 | B.1.36 | 0.000875 |
ORF3a | 104 | P104R | cCt | cGt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 104 | P104T | Cct | Act | 6 | 6 | B.1.617.2 | 0.000023 |
ORF3a | 104 | P104P | ccT | ccC | 6 | 6 | D.2 | 0.00045 |
ORF3a | 104 | P104P | ccT | ccC | 3 | 5 | 0.166667 | |
ORF3a | 104 | P104P | ccT | ccA | 2 | 5 | 0.111111 | |
ORF3a | 104 | P104del2 | cCT | c-- | 4 | 5 | All | 0.000001 |
ORF3a | 104 | P104del2 | CCt | --t | 1 | 5 | All | 0 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | AY.111 | 0.000916 |
ORF3a | 104 | P104P | ccT | ccG | 5 | 5 | AY.118 | 0.000313 |
ORF3a | 104 | P104P | ccT | ccG | 5 | 5 | AY.14 | 0.00044 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | AY.23 | 0.000349 |
ORF3a | 104 | P104P | ccT | ccG | 3 | 5 | AY.26 | 0.000085 |
ORF3a | 104 | P104P | ccT | ccC | 2 | 5 | AY.26 | 0.000057 |
ORF3a | 104 | P104P | ccT | ccC | 2 | 5 | AY.39 | 0.000049 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 5 | AY.39 | 0.000049 |
ORF3a | 104 | P104P | ccT | ccA | 1 | 5 | AY.39 | 0.000025 |
ORF3a | 104 | P104T | Cct | Act | 5 | 5 | AY.4 | 0.000008 |
ORF3a | 104 | P104S | Cct | Tct | 5 | 5 | AY.4.2.1 | 0.000745 |
ORF3a | 104 | P104del | CCT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF3a | 104 | P104T | Cct | Act | 5 | 5 | AY.44 | 0.00003 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | AY.46.4 | 0.000823 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | AY.47 | 0.000156 |
ORF3a | 104 | P104S | Cct | Tct | 5 | 5 | AY.60 | 0.00469 |
ORF3a | 104 | P104S | Cct | Tct | 5 | 5 | AY.70 | 0.001043 |
ORF3a | 104 | P104S | Cct | Tct | 5 | 5 | AY.98.1 | 0.000242 |
ORF3a | 104 | P104S | Cct | Tct | 5 | 5 | B | 0.000639 |
ORF3a | 104 | P104P | ccT | ccC | 5 | 5 | B.1.1.176 | 0.002197 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | B.1.177.19 | 0.007153 |
ORF3a | 104 | P104H | cCt | cAt | 5 | 5 | B.1.2 | 0.000044 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | B.1.240 | 0.001078 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF3a | 104 | P104del | CCT | --- | 5 | 5 | B.1.525 | 0.000566 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | B.1.596 | 0.000436 |
ORF3a | 104 | P104S | Cct | Tct | 5 | 5 | B.1.609 | 0.002397 |
ORF3a | 104 | P104del | CCT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF3a | 104 | P104F | CCt | TTt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | C.37 | 0.00058 |
ORF3a | 104 | P104S | Cct | Tct | 5 | 5 | P.1.12 | 0.00242 |
ORF3a | 104 | P104S | Cct | Tct | 5 | 5 | Q.3 | 0.000725 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | Q.4 | 0.002274 |
ORF3a | 104 | P104L | cCt | cTt | 5 | 5 | Q.8 | 0.000825 |
ORF3a | 104 | P104C | CCt | TGt | 4 | 4 | All | 0.000001 |
ORF3a | 104 | P104C | CCt | TGt | 4 | 4 | AY.103 | 0.000025 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | AY.116 | 0.001147 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | AY.13 | 0.000644 |
ORF3a | 104 | P104P | ccT | ccC | 4 | 4 | AY.20 | 0.000155 |
ORF3a | 104 | P104del | CCT | --- | 4 | 4 | AY.25 | 0.000024 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | AY.37 | 0.001264 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | AY.39 | 0.000099 |
ORF3a | 104 | P104del | CCT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | AY.4.2 | 0.000087 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | AY.40 | 0.003857 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | AY.42 | 0.000161 |
ORF3a | 104 | P104H | cCt | cAt | 4 | 4 | AY.43 | 0.000018 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | AY.46 | 0.000416 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | AY.47 | 0.000124 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | AY.58 | 0.00363 |
ORF3a | 104 | P104P | ccT | ccG | 4 | 4 | AY.61 | 0.000419 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | AY.92 | 0.001149 |
ORF3a | 104 | P104F | CCt | TTt | 4 | 4 | B.1.1 | 0.000073 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.1.157 | 0.003653 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | B.1.1.263 | 0.006231 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.1.316 | 0.0037 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.177.17 | 0.003284 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | B.1.177.40 | 0.020619 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.177.65 | 0.002661 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.177.73 | 0.002265 |
ORF3a | 104 | P104P | ccT | ccC | 3 | 4 | B.1.2 | 0.000026 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 4 | B.1.2 | 0.000009 |
ORF3a | 104 | P104P | ccT | ccC | 4 | 4 | B.1.221 | 0.000284 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | B.1.234 | 0.000528 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.497 | 0.001259 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 104 | P104T | Cct | Act | 4 | 4 | B.1.526 | 0.000094 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.618 | 0.016129 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | B.1.621 | 0.000354 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 4 | B.1.91 | 0.004149 |
ORF3a | 104 | P104T | Cct | Act | 2 | 4 | B.1.91 | 0.004149 |
ORF3a | 104 | P104T | CcT | AcC | 1 | 4 | B.1.91 | 0.002075 |
ORF3a | 104 | P104T | CcT | AcG | 1 | 4 | B.1.91 | 0.002075 |
ORF3a | 104 | P104S | CcT | TcC | 1 | 4 | B.1.91 | 0.002075 |
ORF3a | 104 | P104S | CcT | TcG | 1 | 4 | B.1.91 | 0.002075 |
ORF3a | 104 | P104del | CCT | --- | 4 | 4 | P.1 | 0.000063 |
ORF3a | 104 | P104S | Cct | Tct | 4 | 4 | P.1.15 | 0.000929 |
ORF3a | 104 | P104del | CCT | --- | 4 | 4 | P.1.15 | 0.000929 |
ORF3a | 104 | P104L | cCt | cTt | 4 | 4 | P.1.15 | 0.000929 |
ORF3a | 104 | P104T | Cct | Act | 3 | 3 | A.23.1 | 0.002113 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AD.2 | 0.000657 |
ORF3a | 104 | P104P | ccT | ccA | 2 | 3 | AY.102 | 0.000053 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 3 | AY.102 | 0.000027 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | AY.113 | 0.000427 |
ORF3a | 104 | P104T | Cct | Act | 3 | 3 | AY.117 | 0.000254 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.118 | 0.000188 |
ORF3a | 104 | P104R | cCt | cGt | 3 | 3 | AY.26 | 0.000085 |
ORF3a | 104 | P104H | cCt | cAt | 3 | 3 | AY.3 | 0.00003 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | AY.32 | 0.001597 |
ORF3a | 104 | P104T | Cct | Act | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 104 | P104A | CcT | GcC | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | AY.34 | 0.000291 |
ORF3a | 104 | P104P | ccT | ccG | 3 | 3 | AY.35 | 0.000699 |
ORF3a | 104 | P104H | cCt | cAt | 3 | 3 | AY.39 | 0.000074 |
ORF3a | 104 | P104del2 | cCT | c-- | 3 | 3 | AY.4 | 0.000005 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.42 | 0.000121 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.46.1 | 0.00308 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | AY.67 | 0.001393 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.74 | 0.000347 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | AY.75 | 0.000168 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.9 | 0.000203 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | AY.9.2 | 0.00011 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.91.1 | 0.012195 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | AY.92 | 0.000862 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | AY.99 | 0.003148 |
ORF3a | 104 | P104R | cCt | cGt | 3 | 3 | B.1 | 0.000027 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | B.1.1.189 | 0.004539 |
ORF3a | 104 | P104H | cCt | cAt | 3 | 3 | B.1.1.234 | 0.036145 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF3a | 104 | P104P | ccT | ccG | 3 | 3 | B.1.1.318 | 0.000905 |
ORF3a | 104 | P104del1 | ccT | cc- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 104 | P104F | CCt | TTt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.177.32 | 0.004049 |
ORF3a | 104 | P104R | cCt | cGt | 3 | 3 | B.1.2 | 0.000026 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.243 | 0.000209 |
ORF3a | 104 | P104P | ccT | ccC | 3 | 3 | B.1.36 | 0.000438 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | B.1.36.27 | 0.00229 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | B.1.427 | 0.000151 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | B.1.575 | 0.00091 |
ORF3a | 104 | P104del | CCT | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF3a | 104 | P104H | cCt | cAt | 3 | 3 | B.1.637 | 0.000219 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | C.14 | 0.012987 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | P.1.1 | 0.000953 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | P.1.14 | 0.000143 |
ORF3a | 104 | P104L | cCt | cTt | 3 | 3 | P.1.16 | 0.001122 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | P.1.2 | 0.003468 |
ORF3a | 104 | P104S | Cct | Tct | 3 | 3 | P.2 | 0.00056 |
ORF3a | 104 | P104H | cCt | cAt | 3 | 3 | P.2 | 0.00056 |
ORF3a | 104 | P104F | CCt | TTt | 2 | 2 | 0.111111 | |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | A.1 | 0.000564 |
ORF3a | 104 | P104I | CCt | ATt | 1 | 2 | All | 0 |
ORF3a | 104 | P104I | CCT | ATC | 1 | 2 | All | 0 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | AY.1 | 0.000791 |
ORF3a | 104 | P104H | cCt | cAt | 2 | 2 | AY.102 | 0.000053 |
ORF3a | 104 | P104T | Cct | Act | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 104 | P104A | Cct | Gct | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 104 | P104del | CCT | --- | 2 | 2 | AY.108 | 0.002205 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.114 | 0.000462 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 104 | P104H | cCt | cAt | 2 | 2 | AY.120.1 | 0.000642 |
ORF3a | 104 | P104del | CCT | --- | 2 | 2 | AY.23 | 0.000139 |
ORF3a | 104 | P104T | Cct | Act | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 104 | P104H | cCt | cAt | 2 | 2 | AY.26 | 0.000057 |
ORF3a | 104 | P104del | CCT | --- | 2 | 2 | AY.29 | 0.000032 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF3a | 104 | P104H | cCt | cAt | 2 | 2 | AY.33 | 0.000134 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | AY.38 | 0.000999 |
ORF3a | 104 | P104R | cCt | cGt | 2 | 2 | AY.4 | 0.000003 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 104 | P104del | CCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 2 | AY.42 | 0.00004 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 2 | AY.42 | 0.00004 |
ORF3a | 104 | P104A | CcT | GcA | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 104 | P104A | Cct | Gct | 1 | 2 | AY.43 | 0.000004 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | AY.46.4 | 0.000329 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | AY.46.5 | 0.000397 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.48 | 0.00093 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.55 | 0.001835 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | AY.57 | 0.001312 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | AY.58 | 0.001815 |
ORF3a | 104 | P104P | ccT | ccC | 2 | 2 | AY.60 | 0.001876 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 2 | AY.62 | 0.000436 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 2 | AY.62 | 0.000436 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | AY.74 | 0.000231 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.88 | 0.001768 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.9.1 | 0.000167 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | AY.96 | 0.004149 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | AY.98 | 0.000158 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF3a | 104 | P104del1 | ccT | cc- | 2 | 2 | B.1 | 0.000018 |
ORF3a | 104 | P104H | cCt | cAt | 2 | 2 | B.1 | 0.000018 |
ORF3a | 104 | P104T | Cct | Act | 2 | 2 | B.1 | 0.000018 |
ORF3a | 104 | P104A | Cct | Gct | 2 | 2 | B.1.1 | 0.000036 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.153 | 0.002191 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.1.1.214 | 0.000111 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.265 | 0.006309 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.294 | 0.002532 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.1.1.317 | 0.000823 |
ORF3a | 104 | P104P | ccT | ccA | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 2 | B.1.1.33 | 0.000421 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | B.1.1.337 | 0.007194 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.1.1.39 | 0.001019 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF3a | 104 | P104F | CCt | TTt | 2 | 2 | B.1.1.507 | 0.017391 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.147 | 0.001512 |
ORF3a | 104 | P104P | ccT | ccC | 2 | 2 | B.1.177.15 | 0.001262 |
ORF3a | 104 | P104P | ccT | ccC | 2 | 2 | B.1.177.16 | 0.001329 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.177.57 | 0.000562 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.1.177.57 | 0.000562 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.177.79 | 0.004684 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.1.177.83 | 0.002963 |
ORF3a | 104 | P104del | CCT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.214.2 | 0.001199 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.1.221 | 0.000142 |
ORF3a | 104 | P104del | CCT | --- | 2 | 2 | B.1.240 | 0.000431 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.241 | 0.001623 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.258 | 0.000133 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.311 | 0.000549 |
ORF3a | 104 | P104F | CCt | TTt | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 104 | P104H | cCt | cAt | 2 | 2 | B.1.351 | 0.000059 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 2 | B.1.351 | 0.00003 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 2 | B.1.351 | 0.00003 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.36 | 0.000292 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.36.22 | 0.002415 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.1.369 | 0.00057 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.397 | 0.009709 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.400 | 0.000858 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.413 | 0.008511 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.426 | 0.002018 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.1.451 | 0.016393 |
ORF3a | 104 | P104R | cCt | cGt | 2 | 2 | B.1.595 | 0.000522 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | B.1.595 | 0.000522 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.1.621.1 | 0.001012 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | B.1.625 | 0.004706 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | B.1.628 | 0.000705 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | B.1.631 | 0.006734 |
ORF3a | 104 | P104F | CCt | TTt | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 104 | P104F | CCT | TTC | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 104 | P104L | cCT | cTC | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 104 | P104I | CCt | ATt | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 104 | P104I | CCT | ATC | 1 | 2 | B.1.91 | 0.002075 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | B.52 | 0.020202 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | C.35 | 0.001548 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 2 | C.37 | 0.000116 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 2 | C.37 | 0.000116 |
ORF3a | 104 | P104S | Cct | Tct | 2 | 2 | P.1.10 | 0.000539 |
ORF3a | 104 | P104F | CCt | TTt | 2 | 2 | P.1.17 | 0.000324 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | P.1.17 | 0.000324 |
ORF3a | 104 | P104P | ccT | ccG | 2 | 2 | P.1.17 | 0.000324 |
ORF3a | 104 | P104L | cCt | cTt | 2 | 2 | R.1 | 0.00018 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | A | 0.000387 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | A | 0.000387 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | A.12 | 0.166667 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | A.2.2 | 0.001689 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | A.2.5.1 | 0.004808 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AH.3 | 0.003802 |
ORF3a | 104 | P104Y | CCt | TAt | 1 | 1 | All | 0 |
ORF3a | 104 | P104W | CCT | TGG | 1 | 1 | All | 0 |
ORF3a | 104 | P104X | CCT | TAG | 1 | 1 | All | 0 |
ORF3a | 104 | P104N | CCt | AAt | 1 | 1 | All | 0 |
ORF3a | 104 | P104D | CCt | GAt | 1 | 1 | All | 0 |
ORF3a | 104 | P104Q | cCT | cAA | 1 | 1 | All | 0 |
ORF3a | 104 | P104V | CCt | GTt | 1 | 1 | All | 0 |
ORF3a | 104 | P104K | CCT | AAG | 1 | 1 | All | 0 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AM.1 | 0.111111 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AM.4 | 0.003571 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AV.1 | 0.005051 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.100 | 0.000046 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.105 | 0.000643 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.107 | 0.000466 |
ORF3a | 104 | P104F | CCt | TTt | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.113 | 0.000142 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.119 | 0.000035 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | AY.12 | 0.000316 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.16 | 0.00038 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 104 | P104del2 | CCt | --t | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.24 | 0.000431 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.29.1 | 0.000221 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.30 | 0.000396 |
ORF3a | 104 | P104P | ccT | ccA | 1 | 1 | AY.31 | 0.018519 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AY.35 | 0.000233 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.36 | 0.000148 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 104 | P104A | Cct | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.4.1 | 0.000737 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.4.3 | 0.000842 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.4.4 | 0.000409 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF3a | 104 | P104del1 | ccT | cc- | 1 | 1 | AY.43 | 0.000004 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | AY.44 | 0.000006 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | AY.45 | 0.000122 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | AY.46 | 0.000104 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | AY.46.2 | 0.000635 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.46.6 | 0.000072 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.48 | 0.000465 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.53 | 0.000288 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.56 | 0.001605 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.61 | 0.000105 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.63 | 0.000387 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.69 | 0.000187 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.7 | 0.000196 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.72 | 0.001361 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.73 | 0.000665 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.79 | 0.001211 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.84 | 0.000437 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | AY.9 | 0.000068 |
ORF3a | 104 | P104del2 | cCT | c-- | 1 | 1 | AY.9.1 | 0.000084 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.9.2 | 0.000037 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AY.90 | 0.000684 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.91 | 0.00073 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.94 | 0.000443 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | AY.95 | 0.000761 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AY.98 | 0.000079 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | AZ.1 | 0.000867 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | AZ.3 | 0.00152 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B | 0.000128 |
ORF3a | 104 | P104F | CCt | TTt | 1 | 1 | B | 0.000128 |
ORF3a | 104 | P104A | Cct | Gct | 1 | 1 | B.1 | 0.000009 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 104 | P104D | CCt | GAt | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 104 | P104V | CCt | GTt | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 104 | P104del1 | ccT | cc- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | B.1.1 | 0.000018 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.171 | 0.003676 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | B.1.1.194 | 0.00495 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.1.204 | 0.00304 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.207 | 0.001182 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 104 | P104del1 | ccT | cc- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.243 | 0.004082 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.266 | 0.012195 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF3a | 104 | P104F | CCt | TTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.312 | 0.001912 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.328 | 0.016949 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.329 | 0.003846 |
ORF3a | 104 | P104Q | cCT | cAA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 104 | P104H | cCT | cAC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.344 | 0.010753 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.351 | 0.002793 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | B.1.1.369 | 0.000446 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.385 | 0.004464 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.388 | 0.045455 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.446 | 0.076923 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.47 | 0.005348 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.1.515 | 0.02 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 104 | P104del1 | ccT | cc- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.524 | 0.020833 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF3a | 104 | P104A | Cct | Gct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 104 | P104W | CCT | TGG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.115 | 0.021739 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 104 | P104P | ccT | ccA | 1 | 1 | B.1.14 | 0.017544 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | B.1.147 | 0.000756 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | B.1.160 | 0.000031 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.160.14 | 0.002119 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | B.1.160.15 | 0.00495 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.160.25 | 0.011111 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.160.32 | 0.004292 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | B.1.177 | 0.000013 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | B.1.177.32 | 0.00135 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.177.41 | 0.0025 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.177.50 | 0.004695 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF3a | 104 | P104F | CCt | TTt | 1 | 1 | B.1.2 | 0.000009 |
ORF3a | 104 | P104F | CCt | TTt | 1 | 1 | B.1.214 | 0.003663 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.218 | 0.005155 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.234 | 0.000132 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.236 | 0.002053 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | B.1.243 | 0.00007 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.243.1 | 0.022222 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.258.11 | 0.000396 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.258.12 | 0.007874 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.258.15 | 0.018868 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.318 | 0.038462 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.320 | 0.001245 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.324 | 0.001605 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.336 | 0.002439 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.340 | 0.004292 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.350 | 0.002933 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.356 | 0.001727 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 104 | P104del1 | ccT | cc- | 1 | 1 | B.1.362 | 0.001541 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 104 | P104F | CCt | TTt | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.367 | 0.000792 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.375 | 0.00082 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | B.1.381 | 0.007812 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.391 | 0.001127 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.399 | 0.001934 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.401 | 0.008197 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | B.1.408 | 0.00369 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.409 | 0.000781 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.422 | 0.000812 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | B.1.425 | 0.002994 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.429 | 0.000024 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | B.1.438.1 | 0.000107 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | B.1.459 | 0.004082 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.474 | 0.001901 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.499 | 0.00105 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.509 | 0.000866 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.530 | 0.007143 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.533 | 0.009615 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.555 | 0.022222 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.560 | 0.00463 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.564 | 0.000426 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.565 | 0.00081 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.576 | 0.000907 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.580 | 0.004065 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.582 | 0.000491 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.595 | 0.000261 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | B.1.596 | 0.000087 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.606 | 0.006024 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF3a | 104 | P104del1 | ccT | cc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.620 | 0.000946 |
ORF3a | 104 | P104del1 | ccT | cc- | 1 | 1 | B.1.621 | 0.000089 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | B.1.621.1 | 0.000506 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.623 | 0.000536 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.627 | 0.00202 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 104 | P104F | CCt | TTt | 1 | 1 | B.1.628 | 0.000352 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | B.1.631 | 0.003367 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.9.4 | 0.006135 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.1.9.5 | 0.005682 |
ORF3a | 104 | P104N | CCt | AAt | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 104 | P104X | CCT | TAG | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 104 | P104Y | CCt | TAt | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 104 | P104K | CCT | AAG | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.3 | 0.000831 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | B.40 | 0.000364 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.40 | 0.000364 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | B.55 | 0.00295 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | B.6 | 0.00091 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | C.14 | 0.004329 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | C.2 | 0.016129 |
ORF3a | 104 | P104del1 | ccT | cc- | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | C.36.3 | 0.000567 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | C.39 | 0.018868 |
ORF3a | 104 | P104F | CCt | TTt | 1 | 1 | P.1 | 0.000016 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | P.1.1 | 0.000318 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 104 | P104R | cCt | cGt | 1 | 1 | P.1.14 | 0.000048 |
ORF3a | 104 | P104H | cCt | cAt | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | P.1.17 | 0.000162 |
ORF3a | 104 | P104L | cCt | cTt | 1 | 1 | P.1.7 | 0.000319 |
ORF3a | 104 | P104P | ccT | ccC | 1 | 1 | P.2 | 0.000187 |
ORF3a | 104 | P104P | ccT | ccG | 1 | 1 | Q.1 | 0.000126 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | Q.4 | 0.000455 |
ORF3a | 104 | P104T | Cct | Act | 1 | 1 | Q.8 | 0.000165 |
ORF3a | 104 | P104S | Cct | Tct | 1 | 1 | R.1 | 0.00009 |
ORF3a | 104 | P104del1 | ccT | cc- | 1 | 1 | R.1 | 0.00009 |
ORF3a | 104 | P104del | CCT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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