CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 104

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF3a104P104SnonsynCctTct32762327570.99984725702-25704
ORF3a104P104SnonsynCcTTcA3276220.000061046325702-25704
ORF3a104P104SnonsynCcTTcC3276220.000061046325702-25704
ORF3a104P104SnonsynCcTTcG3276210.000030523225702-25704
ORF3a104P104LnonsyncCtcTt14679146650.99904625702-25704
ORF3a104P104LnonsyncCTcTC1467970.00047687225702-25704
ORF3a104P104LnonsyncCTcTA1467930.00020437425702-25704
ORF3a104P104LnonsynCCTTTA1467920.00013624925702-25704
ORF3a104P104LnonsyncCTcTG1467920.00013624925702-25704
ORF3a104P104FnonsynCCtTTt244924480.99959225702-25704
ORF3a104P104FnonsynCCTTTC244910.0004083325702-25704
ORF3a104P104PsynccTccG11448560.74825225702-25704
ORF3a104P104PsynccTccC11442680.23426625702-25704
ORF3a104P104PsynccTccA1144200.017482525702-25704
ORF3a104P104HnonsyncCtcAt1901890.99473725702-25704
ORF3a104P104HnonsyncCTcAC19010.0052631625702-25704
ORF3a104P104TnonsynCctAct1541520.98701325702-25704
ORF3a104P104TnonsynCcTAcG15410.0064935125702-25704
ORF3a104P104TnonsynCcTAcC15410.0064935125702-25704
ORF3a104P104deldelCCT---141141125702-25704
ORF3a104P104RnonsyncCtcGt5858125702-25704
ORF3a104P104AnonsynCctGct25210.8425702-25704
ORF3a104P104AnonsynCcTGcC2530.1225702-25704
ORF3a104P104AnonsynCcTGcA2510.0425702-25704
ORF3a104P104del1delccTcc-1414125702-25704
ORF3a104P104del2delcCTc--540.825702-25704
ORF3a104P104del2delCCt--t510.225702-25704
ORF3a104P104CnonsynCCtTGt44125702-25704
ORF3a104P104InonsynCCtATt210.525702-25704
ORF3a104P104InonsynCCTATC210.525702-25704
ORF3a104P104KnonsynCCTAAG11125702-25704
ORF3a104P104NnonsynCCtAAt11125702-25704
ORF3a104P104QnonsyncCTcAA11125702-25704
ORF3a104P104XnonsynCCTTAG11125702-25704
ORF3a104P104DnonsynCCtGAt11125702-25704
ORF3a104P104WnonsynCCTTGG11125702-25704
ORF3a104P104YnonsynCCtTAt11125702-25704
ORF3a104P104VnonsynCCtGTt11125702-25704

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF3a104P104SCctTct3275732762All0.006265
ORF3a104P104SCcTTcC232762All0
ORF3a104P104SCcTTcA232762All0
ORF3a104P104SCcTTcG132762All0
ORF3a104P104SCctTct2444624446AY.1030.151787
ORF3a104P104LcCtcTt1466514679All0.002805
ORF3a104P104LcCTcTC714679All0.000001
ORF3a104P104LcCTcTA314679All0.000001
ORF3a104P104LcCTcTG214679All0
ORF3a104P104LCCTTTA214679All0
ORF3a104P104LcCtcTt84828488B.1.6370.619803
ORF3a104P104LcCTcTC68488B.1.6370.000438
ORF3a104P104SCctTct26532653B.1.1.70.002375
ORF3a104P104FCCtTTt24482449All0.000468
ORF3a104P104FCCTTTC12449All0
ORF3a104P104SCctTct22652265AY.240.976293
ORF3a104P104FCCtTTt21772177B.1.6370.159079
ORF3a104P104LcCtcTt15001500B.1.5260.035257
ORF3a104P104SCctTct13921392B.1.617.20.005241
ORF3a104P104LcCtcTt11551155B.1.1.70.001034
ORF3a104P104PccTccG8561144All0.000164
ORF3a104P104PccTccC2681144All0.000051
ORF3a104P104PccTccA201144All0.000004
ORF3a104P104SCctTct528528AY.40.000822
ORF3a104P104LcCtcTt463463AY.40.000721
ORF3a104P104LcCtcTt458459B.10.004195
ORF3a104P104LcCTcTA1459B.10.000009
ORF3a104P104PccTccG330338AY.40.000514
ORF3a104P104PccTccC8338AY.40.000012
ORF3a104P104LcCtcTt297297B.1.1.40.883929
ORF3a104P104PccTccG190244B.1.1.70.00017
ORF3a104P104PccTccC52244B.1.1.70.000047
ORF3a104P104PccTccA2244B.1.1.70.000002
ORF3a104P104LcCtcTt231231B.1.1770.003042
ORF3a104P104LcCtcTt214214AY.440.001303
ORF3a104P104HcCtcAt189190All0.000036
ORF3a104P104HcCTcAC1190All0
ORF3a104P104FCCtTTt163163AY.1030.001012
ORF3a104P104LcCtcTt158158AY.250.00095
ORF3a104P104SCctTct156156AY.1080.171996
ORF3a104P104TCctAct152154All0.000029
ORF3a104P104TCcTAcG1154All0
ORF3a104P104TCcTAcC1154All0
ORF3a104P104delCCT---141141All0.000027
ORF3a104P104SCctTct141141AY.60.005799
ORF3a104P104LcCtcTt139139B.1.617.20.000523
ORF3a104P104LcCtcTt9191B.1.20.000801
ORF3a104P104SCctTct8989AY.430.000394
ORF3a104P104LcCtcTt8888P.10.001386
ORF3a104P104SCctTct8787AY.250.000523
ORF3a104P104SCctTct8585B.1.2580.005656
ORF3a104P104LcCtcTt8585B.1.4290.002
ORF3a104P104SCctTct8282B.10.000751
ORF3a104P104SCctTct7474B.1.20.000652
ORF3a104P104FCCtTTt7171B.10.00065
ORF3a104P104LcCtcTt6666AY.430.000292
ORF3a104P104RcCtcGt5858All0.000011
ORF3a104P104SCctTct5454AY.440.000329
ORF3a104P104LcCtcTt4747B.1.1.3530.979167
ORF3a104P104LcCtcTt4747B.1.177.600.010266
ORF3a104P104LcCtcTt4444AY.30.000438
ORF3a104P104SCctTct4444B.1.1600.001372
ORF3a104P104LcCtcTt4444B.1.2210.003125
ORF3a104P104HcCtcAt4141AY.60.001686
ORF3a104P104LcCtcTt4141B.1.10.000744
ORF3a104P104PccTccG3840P.10.000599
ORF3a104P104PccTccC240P.10.000032
ORF3a104P104LcCtcTt3939B.1.1.4860.061514
ORF3a104P104PccTccC3437AY.340.003297
ORF3a104P104PccTccG337AY.340.000291
ORF3a104P104delCCT---3737B.1.1.70.000033
ORF3a104P104LcCtcTt3434AY.1030.000211
ORF3a104P104SCctTct3434AY.330.00227
ORF3a104P104HcCtcAt3434AY.40.000053
ORF3a104P104PccTccG3333AY.46.60.002383
ORF3a104P104SCctTct3333B.1.1770.000435
ORF3a104P104PccTccG1931B.1.617.20.000072
ORF3a104P104PccTccC631B.1.617.20.000023
ORF3a104P104PccTccA631B.1.617.20.000023
ORF3a104P104LcCtcTt3030AY.1020.000795
ORF3a104P104TCctAct2929AY.390.000717
ORF3a104P104LcCtcTt2929P.1.140.001386
ORF3a104P104LcCtcTt2727B.1.177.40.005699
ORF3a104P104LcCtcTt2727B.1.5250.003055
ORF3a104P104SCctTct2626AY.1170.002197
ORF3a104P104SCctTct2626C.370.003018
ORF3a104P104LcCtcTt2626D.20.001951
ORF3a104P104SCctTct2626P.10.00041
ORF3a104P104ACctGct2125All0.000004
ORF3a104P104ACcTGcC325All0.000001
ORF3a104P104ACcTGcA125All0
ORF3a104P104LcCtcTt2525AY.200.000972
ORF3a104P104SCctTct2424AY.30.000239
ORF3a104P104HcCtcAt2323AY.1030.000143
ORF3a104P104LcCtcTt2323AY.120.2.10.01146
ORF3a104P104PccTccC1323AY.430.000058
ORF3a104P104PccTccG1023AY.430.000044
ORF3a104P104RcCtcGt2323B.1.1.70.000021
ORF3a104P104LcCtcTt2222AY.390.000544
ORF3a104P104LcCtcTt2222AY.610.002305
ORF3a104P104LcCtcTt2222B.1.3200.027397
ORF3a104P104LcCtcTt2020B.1.1.5190.000794
ORF3a104P104LcCtcTt2020B.1.3510.000595
ORF3a104P104LcCtcTt1919AY.1000.000874
ORF3a104P104LcCtcTt1818AY.1200.000669
ORF3a104P104PccTccC1118AY.440.000067
ORF3a104P104PccTccG718AY.440.000043
ORF3a104P104PccTccG1017AY.4.20.000217
ORF3a104P104PccTccC717AY.4.20.000152
ORF3a104P104LcCtcTt1616AY.1060.005358
ORF3a104P104PccTccC1016AY.250.00006
ORF3a104P104PccTccG616AY.250.000036
ORF3a104P104SCctTct1616B.1.10.00029
ORF3a104P104PccTccC1416B.1.1770.000184
ORF3a104P104PccTccG216B.1.1770.000026
ORF3a104P104TCctAct1616R.10.00144
ORF3a104P104LcCtcTt1515B.1.1.3020.03112
ORF3a104P104LcCtcTt1515B.1.1600.000468
ORF3a104P104PccTccG1515B.1.5260.000353
ORF3a104P104PccTccG1215B.1.6210.001062
ORF3a104P104PccTccC315B.1.6210.000266
ORF3a104P104SCctTct1515Q.80.002474
ORF3a104P104del1ccTcc-1414All0.000003
ORF3a104P104LcCtcTt1414AY.1190.000494
ORF3a104P104LcCtcTt1414AY.290.000221
ORF3a104P104PccTccG1114AY.30.000109
ORF3a104P104PccTccC314AY.30.00003
ORF3a104P104PccTccC1014B.1.10.000181
ORF3a104P104PccTccA214B.1.10.000036
ORF3a104P104PccTccG214B.1.10.000036
ORF3a104P104LcCtcTt1414B.1.177.70.002308
ORF3a104P104LcCtcTt1414P.20.002613
ORF3a104P104SCctTct1313AY.200.000505
ORF3a104P104LcCtcTt1313AY.840.005687
ORF3a104P104TCctAct1313B.1.1770.000171
ORF3a104P104delCCT---1313B.1.1770.000171
ORF3a104P104ACctGct1313B.1.20.000114
ORF3a104P104LcCtcTt1313C.160.013786
ORF3a104P104TCctAct1212AY.250.000072
ORF3a104P104LcCtcTt1212AY.260.00034
ORF3a104P104SCctTct1212AY.620.005229
ORF3a104P104LcCtcTt1212B0.001534
ORF3a104P104delCCT---1212B.10.00011
ORF3a104P104LcCtcTt1212B.1.36.360.007225
ORF3a104P104PccTccG1212Q.30.00174
ORF3a104P104LcCtcTt5110.277778
ORF3a104P104LCCTTTA2110.111111
ORF3a104P104LcCTcTG2110.111111
ORF3a104P104LcCTcTA2110.111111
ORF3a104P104SCctTct1111AY.260.000311
ORF3a104P104SCctTct1111AY.50.000227
ORF3a104P104PccTccG1111AY.980.000869
ORF3a104P104LcCtcTt1111B.1.1.2140.00061
ORF3a104P104HcCtcAt1111B.1.1.70.00001
ORF3a104P104SCctTct1111B.1.258.170.001144
ORF3a104P104SCctTct1111B.1.5960.000959
ORF3a104P104PccTccG1111P.1.100.002964
ORF3a104P104PccTccG610AY.1030.000037
ORF3a104P104PccTccC410AY.1030.000025
ORF3a104P104LcCtcTt1010AY.540.000953
ORF3a104P104TCctAct1010B.1.20.000088
ORF3a104P104SCctTct1010B.1.6370.000731
ORF3a104P104SCctTct1010Q.10.001263
ORF3a104P104PccTccG99AY.1110.001648
ORF3a104P104PccTccG99AY.1200.000335
ORF3a104P104PccTccG99AY.130.001449
ORF3a104P104SCctTct99AY.230.000628
ORF3a104P104HcCtcAt99AY.290.000142
ORF3a104P104SCctTct99AY.370.002845
ORF3a104P104LcCtcTt99AY.60.00037
ORF3a104P104PccTccC69AY.60.000247
ORF3a104P104PccTccG39AY.60.000123
ORF3a104P104PccTccC79B.10.000064
ORF3a104P104PccTccA29B.10.000018
ORF3a104P104TCctAct99B.1.1.70.000008
ORF3a104P104LcCtcTt99B.1.177.530.021531
ORF3a104P104LcCtcTt99B.1.2340.001187
ORF3a104P104SCctTct99B.1.264.10.428571
ORF3a104P104SCctTct99B.1.3510.000268
ORF3a104P104SCctTct99B.1.4270.000454
ORF3a104P104LcCtcTt88AU.10.010127
ORF3a104P104SCctTct88AY.1180.000501
ORF3a104P104PccTccG88AY.20.002849
ORF3a104P104HcCtcAt88AY.250.000048
ORF3a104P104LcCtcTt88AY.50.000165
ORF3a104P104PccTccG88AY.50.000165
ORF3a104P104SCctTct88AY.90.000541
ORF3a104P104FCCtTTt88B.1.1.1890.012103
ORF3a104P104SCctTct88B.1.1.5190.000318
ORF3a104P104SCctTct88B.1.2370.039801
ORF3a104P104SCctTct88B.1.6210.000708
ORF3a104P104SCctTct470.222222
ORF3a104P104SCcTTcA270.111111
ORF3a104P104SCcTTcC170.055556
ORF3a104P104LcCtcTt77AY.1170.000592
ORF3a104P104SCctTct77AY.1190.000247
ORF3a104P104LcCtcTt77AY.39.10.000277
ORF3a104P104HcCtcAt77AY.440.000043
ORF3a104P104SCctTct77AY.450.000852
ORF3a104P104LcCtcTt77AY.460.000729
ORF3a104P104PccTccC57AY.470.000156
ORF3a104P104PccTccG27AY.470.000062
ORF3a104P104SCctTct77B.1.1.250.00398
ORF3a104P104LcCtcTt77B.1.1.5250.038251
ORF3a104P104TCctAct77B.1.3510.000208
ORF3a104P104TCctAct77B.1.4290.000165
ORF3a104P104SCctTct77B.1.4290.000165
ORF3a104P104SCctTct77B.1.5260.000165
ORF3a104P104HcCtcAt77B.1.617.20.000026
ORF3a104P104LcCtcTt77B.1.6360.04698
ORF3a104P104PccTccG66AY.750.000336
ORF3a104P104LcCtcTt66AY.750.000336
ORF3a104P104LcCtcTt66AZ.30.009119
ORF3a104P104SCctTct66B.1.1.2160.005343
ORF3a104P104LcCtcTt66B.1.1.5070.052174
ORF3a104P104PccTccC66B.1.2430.000418
ORF3a104P104RcCtcGt66B.1.3510.000178
ORF3a104P104SCctTct66B.1.360.000875
ORF3a104P104RcCtcGt66B.1.617.20.000023
ORF3a104P104TCctAct66B.1.617.20.000023
ORF3a104P104PccTccC66D.20.00045
ORF3a104P104PccTccC350.166667
ORF3a104P104PccTccA250.111111
ORF3a104P104del2cCTc--45All0.000001
ORF3a104P104del2CCt--t15All0
ORF3a104P104LcCtcTt55AY.1110.000916
ORF3a104P104PccTccG55AY.1180.000313
ORF3a104P104PccTccG55AY.140.00044
ORF3a104P104LcCtcTt55AY.230.000349
ORF3a104P104PccTccG35AY.260.000085
ORF3a104P104PccTccC25AY.260.000057
ORF3a104P104PccTccC25AY.390.000049
ORF3a104P104PccTccG25AY.390.000049
ORF3a104P104PccTccA15AY.390.000025
ORF3a104P104TCctAct55AY.40.000008
ORF3a104P104SCctTct55AY.4.2.10.000745
ORF3a104P104delCCT---55AY.430.000022
ORF3a104P104TCctAct55AY.440.00003
ORF3a104P104LcCtcTt55AY.46.40.000823
ORF3a104P104LcCtcTt55AY.470.000156
ORF3a104P104SCctTct55AY.600.00469
ORF3a104P104SCctTct55AY.700.001043
ORF3a104P104SCctTct55AY.98.10.000242
ORF3a104P104SCctTct55B0.000639
ORF3a104P104PccTccC55B.1.1.1760.002197
ORF3a104P104LcCtcTt55B.1.177.190.007153
ORF3a104P104HcCtcAt55B.1.20.000044
ORF3a104P104LcCtcTt55B.1.2400.001078
ORF3a104P104LcCtcTt55B.1.36.290.002587
ORF3a104P104delCCT---55B.1.5250.000566
ORF3a104P104LcCtcTt55B.1.5960.000436
ORF3a104P104SCctTct55B.1.6090.002397
ORF3a104P104delCCT---55B.1.617.20.000019
ORF3a104P104FCCtTTt55B.1.617.20.000019
ORF3a104P104LcCtcTt55C.370.00058
ORF3a104P104SCctTct55P.1.120.00242
ORF3a104P104SCctTct55Q.30.000725
ORF3a104P104LcCtcTt55Q.40.002274
ORF3a104P104LcCtcTt55Q.80.000825
ORF3a104P104CCCtTGt44All0.000001
ORF3a104P104CCCtTGt44AY.1030.000025
ORF3a104P104SCctTct44AY.1160.001147
ORF3a104P104SCctTct44AY.130.000644
ORF3a104P104PccTccC44AY.200.000155
ORF3a104P104delCCT---44AY.250.000024
ORF3a104P104LcCtcTt44AY.370.001264
ORF3a104P104SCctTct44AY.390.000099
ORF3a104P104delCCT---44AY.40.000006
ORF3a104P104SCctTct44AY.4.20.000087
ORF3a104P104LcCtcTt44AY.400.003857
ORF3a104P104SCctTct44AY.420.000161
ORF3a104P104HcCtcAt44AY.430.000018
ORF3a104P104SCctTct44AY.460.000416
ORF3a104P104SCctTct44AY.470.000124
ORF3a104P104LcCtcTt44AY.580.00363
ORF3a104P104PccTccG44AY.610.000419
ORF3a104P104LcCtcTt44AY.920.001149
ORF3a104P104FCCtTTt44B.1.10.000073
ORF3a104P104LcCtcTt44B.1.1.1570.003653
ORF3a104P104SCctTct44B.1.1.2630.006231
ORF3a104P104LcCtcTt44B.1.1.3160.0037
ORF3a104P104LcCtcTt44B.1.177.170.003284
ORF3a104P104SCctTct44B.1.177.400.020619
ORF3a104P104LcCtcTt44B.1.177.650.002661
ORF3a104P104LcCtcTt44B.1.177.730.002265
ORF3a104P104PccTccC34B.1.20.000026
ORF3a104P104PccTccG14B.1.20.000009
ORF3a104P104PccTccC44B.1.2210.000284
ORF3a104P104SCctTct44B.1.2340.000528
ORF3a104P104LcCtcTt44B.1.4970.001259
ORF3a104P104SCctTct44B.1.5250.000453
ORF3a104P104TCctAct44B.1.5260.000094
ORF3a104P104LcCtcTt44B.1.6180.016129
ORF3a104P104LcCtcTt44B.1.6210.000354
ORF3a104P104SCctTct24B.1.910.004149
ORF3a104P104TCctAct24B.1.910.004149
ORF3a104P104TCcTAcC14B.1.910.002075
ORF3a104P104TCcTAcG14B.1.910.002075
ORF3a104P104SCcTTcC14B.1.910.002075
ORF3a104P104SCcTTcG14B.1.910.002075
ORF3a104P104delCCT---44P.10.000063
ORF3a104P104SCctTct44P.1.150.000929
ORF3a104P104delCCT---44P.1.150.000929
ORF3a104P104LcCtcTt44P.1.150.000929
ORF3a104P104TCctAct33A.23.10.002113
ORF3a104P104LcCtcTt33AD.20.000657
ORF3a104P104PccTccA23AY.1020.000053
ORF3a104P104PccTccC13AY.1020.000027
ORF3a104P104SCctTct33AY.1130.000427
ORF3a104P104TCctAct33AY.1170.000254
ORF3a104P104LcCtcTt33AY.1180.000188
ORF3a104P104RcCtcGt33AY.260.000085
ORF3a104P104HcCtcAt33AY.30.00003
ORF3a104P104SCctTct33AY.320.001597
ORF3a104P104TCctAct33AY.340.000291
ORF3a104P104ACcTGcC33AY.340.000291
ORF3a104P104SCctTct33AY.340.000291
ORF3a104P104PccTccG33AY.350.000699
ORF3a104P104HcCtcAt33AY.390.000074
ORF3a104P104del2cCTc--33AY.40.000005
ORF3a104P104LcCtcTt33AY.420.000121
ORF3a104P104LcCtcTt33AY.46.10.00308
ORF3a104P104SCctTct33AY.670.001393
ORF3a104P104LcCtcTt33AY.740.000347
ORF3a104P104SCctTct33AY.750.000168
ORF3a104P104LcCtcTt33AY.90.000203
ORF3a104P104LcCtcTt33AY.9.20.00011
ORF3a104P104SCctTct33AY.9.20.00011
ORF3a104P104LcCtcTt33AY.91.10.012195
ORF3a104P104SCctTct33AY.920.000862
ORF3a104P104LcCtcTt33AY.990.003148
ORF3a104P104RcCtcGt33B.10.000027
ORF3a104P104LcCtcTt33B.1.1.10.00098
ORF3a104P104SCctTct33B.1.1.1890.004539
ORF3a104P104HcCtcAt33B.1.1.2340.036145
ORF3a104P104LcCtcTt33B.1.1.3170.001235
ORF3a104P104PccTccG33B.1.1.3180.000905
ORF3a104P104del1ccTcc-33B.1.1.70.000003
ORF3a104P104FCCtTTt33B.1.1.70.000003
ORF3a104P104LcCtcTt33B.1.177.320.004049
ORF3a104P104RcCtcGt33B.1.20.000026
ORF3a104P104LcCtcTt33B.1.2430.000209
ORF3a104P104PccTccC33B.1.360.000438
ORF3a104P104SCctTct33B.1.36.270.00229
ORF3a104P104LcCtcTt33B.1.4270.000151
ORF3a104P104SCctTct33B.1.5750.00091
ORF3a104P104delCCT---33B.1.6210.000266
ORF3a104P104HcCtcAt33B.1.6370.000219
ORF3a104P104SCctTct33C.140.012987
ORF3a104P104SCctTct33P.1.10.000953
ORF3a104P104SCctTct33P.1.140.000143
ORF3a104P104LcCtcTt33P.1.160.001122
ORF3a104P104SCctTct33P.1.20.003468
ORF3a104P104SCctTct33P.20.00056
ORF3a104P104HcCtcAt33P.20.00056
ORF3a104P104FCCtTTt220.111111
ORF3a104P104LcCtcTt22A.10.000564
ORF3a104P104ICCtATt12All0
ORF3a104P104ICCTATC12All0
ORF3a104P104PccTccG22AY.10.000791
ORF3a104P104HcCtcAt22AY.1020.000053
ORF3a104P104TCctAct22AY.1080.002205
ORF3a104P104ACctGct22AY.1080.002205
ORF3a104P104delCCT---22AY.1080.002205
ORF3a104P104LcCtcTt22AY.1140.000462
ORF3a104P104LcCtcTt22AY.120.000632
ORF3a104P104HcCtcAt22AY.120.10.000642
ORF3a104P104delCCT---22AY.230.000139
ORF3a104P104TCctAct22AY.260.000057
ORF3a104P104HcCtcAt22AY.260.000057
ORF3a104P104delCCT---22AY.290.000032
ORF3a104P104LcCtcTt22AY.3.10.000171
ORF3a104P104HcCtcAt22AY.330.000134
ORF3a104P104PccTccG22AY.380.000999
ORF3a104P104RcCtcGt22AY.40.000003
ORF3a104P104LcCtcTt22AY.4.20.000043
ORF3a104P104PccTccG22AY.4.2.10.000298
ORF3a104P104LcCtcTt22AY.4.40.000818
ORF3a104P104delCCT---22AY.4.50.000215
ORF3a104P104PccTccG12AY.420.00004
ORF3a104P104PccTccC12AY.420.00004
ORF3a104P104ACcTGcA12AY.430.000004
ORF3a104P104ACctGct12AY.430.000004
ORF3a104P104SCctTct22AY.46.40.000329
ORF3a104P104PccTccG22AY.46.50.000397
ORF3a104P104LcCtcTt22AY.480.00093
ORF3a104P104LcCtcTt22AY.550.001835
ORF3a104P104SCctTct22AY.570.001312
ORF3a104P104SCctTct22AY.580.001815
ORF3a104P104PccTccC22AY.600.001876
ORF3a104P104PccTccG12AY.620.000436
ORF3a104P104PccTccC12AY.620.000436
ORF3a104P104SCctTct22AY.740.000231
ORF3a104P104LcCtcTt22AY.75.10.000361
ORF3a104P104LcCtcTt22AY.810.003984
ORF3a104P104LcCtcTt22AY.880.001768
ORF3a104P104LcCtcTt22AY.9.10.000167
ORF3a104P104PccTccG22AY.960.004149
ORF3a104P104SCctTct22AY.980.000158
ORF3a104P104SCctTct22AY.99.20.000184
ORF3a104P104LcCtcTt22AY.99.20.000184
ORF3a104P104del1ccTcc-22B.10.000018
ORF3a104P104HcCtcAt22B.10.000018
ORF3a104P104TCctAct22B.10.000018
ORF3a104P104ACctGct22B.1.10.000036
ORF3a104P104LcCtcTt22B.1.1.1530.002191
ORF3a104P104SCctTct22B.1.1.2140.000111
ORF3a104P104LcCtcTt22B.1.1.2650.006309
ORF3a104P104LcCtcTt22B.1.1.280.000622
ORF3a104P104LcCtcTt22B.1.1.2840.000215
ORF3a104P104LcCtcTt22B.1.1.2940.002532
ORF3a104P104SCctTct22B.1.1.3170.000823
ORF3a104P104PccTccA12B.1.1.330.000421
ORF3a104P104PccTccC12B.1.1.330.000421
ORF3a104P104PccTccG22B.1.1.3370.007194
ORF3a104P104SCctTct22B.1.1.390.001019
ORF3a104P104LcCtcTt22B.1.1.4340.000697
ORF3a104P104FCCtTTt22B.1.1.5070.017391
ORF3a104P104LcCtcTt22B.1.1470.001512
ORF3a104P104PccTccC22B.1.177.150.001262
ORF3a104P104PccTccC22B.1.177.160.001329
ORF3a104P104LcCtcTt22B.1.177.440.001038
ORF3a104P104LcCtcTt22B.1.177.570.000562
ORF3a104P104SCctTct22B.1.177.570.000562
ORF3a104P104LcCtcTt22B.1.177.790.004684
ORF3a104P104SCctTct22B.1.177.830.002963
ORF3a104P104delCCT---22B.1.20.000018
ORF3a104P104LcCtcTt22B.1.214.20.001199
ORF3a104P104SCctTct22B.1.2210.000142
ORF3a104P104delCCT---22B.1.2400.000431
ORF3a104P104LcCtcTt22B.1.2410.001623
ORF3a104P104LcCtcTt22B.1.2580.000133
ORF3a104P104LcCtcTt22B.1.258.170.000208
ORF3a104P104LcCtcTt22B.1.3110.000549
ORF3a104P104FCCtTTt22B.1.3510.000059
ORF3a104P104HcCtcAt22B.1.3510.000059
ORF3a104P104PccTccG12B.1.3510.00003
ORF3a104P104PccTccC12B.1.3510.00003
ORF3a104P104LcCtcTt22B.1.360.000292
ORF3a104P104LcCtcTt22B.1.36.220.002415
ORF3a104P104SCctTct22B.1.3690.00057
ORF3a104P104LcCtcTt22B.1.3970.009709
ORF3a104P104LcCtcTt22B.1.4000.000858
ORF3a104P104LcCtcTt22B.1.4130.008511
ORF3a104P104LcCtcTt22B.1.4260.002018
ORF3a104P104SCctTct22B.1.4510.016393
ORF3a104P104RcCtcGt22B.1.5950.000522
ORF3a104P104LcCtcTt22B.1.5950.000522
ORF3a104P104SCctTct22B.1.621.10.001012
ORF3a104P104PccTccG22B.1.6250.004706
ORF3a104P104PccTccG22B.1.6280.000705
ORF3a104P104PccTccG22B.1.6310.006734
ORF3a104P104FCCtTTt12B.1.910.002075
ORF3a104P104LcCtcTt12B.1.910.002075
ORF3a104P104FCCTTTC12B.1.910.002075
ORF3a104P104LcCTcTC12B.1.910.002075
ORF3a104P104ICCtATt12B.1.910.002075
ORF3a104P104ICCTATC12B.1.910.002075
ORF3a104P104SCctTct22B.520.020202
ORF3a104P104SCctTct22C.350.001548
ORF3a104P104PccTccG12C.370.000116
ORF3a104P104PccTccC12C.370.000116
ORF3a104P104SCctTct22P.1.100.000539
ORF3a104P104FCCtTTt22P.1.170.000324
ORF3a104P104LcCtcTt22P.1.170.000324
ORF3a104P104PccTccG22P.1.170.000324
ORF3a104P104LcCtcTt22R.10.00018
ORF3a104P104delCCT---11A0.000387
ORF3a104P104LcCtcTt11A0.000387
ORF3a104P104SCctTct11A.120.166667
ORF3a104P104HcCtcAt11A.2.20.001689
ORF3a104P104PccTccG11A.2.50.000499
ORF3a104P104SCctTct11A.2.5.10.004808
ORF3a104P104SCctTct11AD.20.000219
ORF3a104P104delCCT---11AH.30.003802
ORF3a104P104YCCtTAt11All0
ORF3a104P104WCCTTGG11All0
ORF3a104P104XCCTTAG11All0
ORF3a104P104NCCtAAt11All0
ORF3a104P104DCCtGAt11All0
ORF3a104P104QcCTcAA11All0
ORF3a104P104VCCtGTt11All0
ORF3a104P104KCCTAAG11All0
ORF3a104P104SCctTct11AM.10.111111
ORF3a104P104LcCtcTt11AM.40.003571
ORF3a104P104delCCT---11AV.10.005051
ORF3a104P104SCctTct11AY.1000.000046
ORF3a104P104delCCT---11AY.1000.000046
ORF3a104P104RcCtcGt11AY.1000.000046
ORF3a104P104PccTccG11AY.1000.000046
ORF3a104P104SCctTct11AY.1010.00049
ORF3a104P104LcCtcTt11AY.1040.001984
ORF3a104P104LcCtcTt11AY.1050.000643
ORF3a104P104delCCT---11AY.1060.000335
ORF3a104P104LcCtcTt11AY.1070.000466
ORF3a104P104FCCtTTt11AY.1080.001103
ORF3a104P104delCCT---11AY.1110.000183
ORF3a104P104LcCtcTt11AY.1130.000142
ORF3a104P104LcCtcTt11AY.1160.000287
ORF3a104P104SCctTct11AY.116.10.000311
ORF3a104P104PccTccG11AY.1190.000035
ORF3a104P104PccTccC11AY.120.000316
ORF3a104P104SCctTct11AY.160.00038
ORF3a104P104delCCT---11AY.200.000039
ORF3a104P104TCctAct11AY.230.00007
ORF3a104P104del2CCt--t11AY.230.00007
ORF3a104P104LcCtcTt11AY.240.000431
ORF3a104P104LcCtcTt11AY.270.000065
ORF3a104P104SCctTct11AY.29.10.000221
ORF3a104P104LcCtcTt11AY.300.000396
ORF3a104P104PccTccG11AY.300.000396
ORF3a104P104PccTccA11AY.310.018519
ORF3a104P104LcCtcTt11AY.330.000067
ORF3a104P104RcCtcGt11AY.330.000067
ORF3a104P104delCCT---11AY.330.000067
ORF3a104P104LcCtcTt11AY.340.000097
ORF3a104P104delCCT---11AY.34.10.00051
ORF3a104P104SCctTct11AY.350.000233
ORF3a104P104LcCtcTt11AY.350.000233
ORF3a104P104delCCT---11AY.350.000233
ORF3a104P104LcCtcTt11AY.360.000148
ORF3a104P104PccTccG11AY.370.000316
ORF3a104P104RcCtcGt11AY.390.000025
ORF3a104P104delCCT---11AY.390.000025
ORF3a104P104SCctTct11AY.39.10.00004
ORF3a104P104TCctAct11AY.39.10.00004
ORF3a104P104ACctGct11AY.40.000002
ORF3a104P104PccTccG11AY.4.10.000737
ORF3a104P104SCctTct11AY.4.30.000842
ORF3a104P104PccTccG11AY.4.40.000409
ORF3a104P104LcCtcTt11AY.4.50.000107
ORF3a104P104del1ccTcc-11AY.430.000004
ORF3a104P104RcCtcGt11AY.440.000006
ORF3a104P104LcCtcTt11AY.450.000122
ORF3a104P104PccTccG11AY.450.000122
ORF3a104P104HcCtcAt11AY.450.000122
ORF3a104P104PccTccC11AY.460.000104
ORF3a104P104PccTccC11AY.46.20.000635
ORF3a104P104SCctTct11AY.46.60.000072
ORF3a104P104SCctTct11AY.480.000465
ORF3a104P104PccTccG11AY.480.000465
ORF3a104P104SCctTct11AY.5.30.000337
ORF3a104P104LcCtcTt11AY.5.40.000277
ORF3a104P104SCctTct11AY.530.000288
ORF3a104P104SCctTct11AY.540.000095
ORF3a104P104PccTccG11AY.540.000095
ORF3a104P104PccTccG11AY.560.001605
ORF3a104P104SCctTct11AY.610.000105
ORF3a104P104TCctAct11AY.620.000436
ORF3a104P104SCctTct11AY.630.000387
ORF3a104P104LcCtcTt11AY.670.000464
ORF3a104P104delCCT---11AY.680.000274
ORF3a104P104SCctTct11AY.690.000187
ORF3a104P104LcCtcTt11AY.690.000187
ORF3a104P104PccTccG11AY.70.000196
ORF3a104P104LcCtcTt11AY.7.10.000113
ORF3a104P104LcCtcTt11AY.720.001361
ORF3a104P104LcCtcTt11AY.730.000665
ORF3a104P104SCctTct11AY.75.10.00018
ORF3a104P104LcCtcTt11AY.790.001211
ORF3a104P104SCctTct11AY.840.000437
ORF3a104P104PccTccC11AY.850.000427
ORF3a104P104SCctTct11AY.860.00083
ORF3a104P104PccTccC11AY.90.000068
ORF3a104P104del2cCTc--11AY.9.10.000084
ORF3a104P104PccTccG11AY.9.20.000037
ORF3a104P104HcCtcAt11AY.900.000684
ORF3a104P104PccTccG11AY.900.000684
ORF3a104P104SCctTct11AY.910.00073
ORF3a104P104LcCtcTt11AY.930.000273
ORF3a104P104LcCtcTt11AY.940.000443
ORF3a104P104SCctTct11AY.950.000761
ORF3a104P104LcCtcTt11AY.980.000079
ORF3a104P104LcCtcTt11AZ.10.000867
ORF3a104P104PccTccG11AZ.30.00152
ORF3a104P104delCCT---11B0.000128
ORF3a104P104FCCtTTt11B0.000128
ORF3a104P104ACctGct11B.10.000009
ORF3a104P104TCctAct11B.1.10.000018
ORF3a104P104DCCtGAt11B.1.10.000018
ORF3a104P104VCCtGTt11B.1.10.000018
ORF3a104P104del1ccTcc-11B.1.10.000018
ORF3a104P104delCCT---11B.1.10.000018
ORF3a104P104RcCtcGt11B.1.10.000018
ORF3a104P104SCctTct11B.1.1.1710.003676
ORF3a104P104LcCtcTt11B.1.1.1890.001513
ORF3a104P104TCctAct11B.1.1.1940.00495
ORF3a104P104delCCT---11B.1.1.2040.00304
ORF3a104P104SCctTct11B.1.1.2070.001182
ORF3a104P104PccTccC11B.1.1.2140.000055
ORF3a104P104RcCtcGt11B.1.1.2160.00089
ORF3a104P104del1ccTcc-11B.1.1.2160.00089
ORF3a104P104SCctTct11B.1.1.2220.000204
ORF3a104P104LcCtcTt11B.1.1.2220.000204
ORF3a104P104LcCtcTt11B.1.1.2430.004082
ORF3a104P104LcCtcTt11B.1.1.2660.012195
ORF3a104P104LcCtcTt11B.1.1.2790.001121
ORF3a104P104PccTccC11B.1.1.280.000311
ORF3a104P104LcCtcTt11B.1.1.2800.003086
ORF3a104P104LcCtcTt11B.1.1.2910.000742
ORF3a104P104FCCtTTt11B.1.1.3010.001179
ORF3a104P104LcCtcTt11B.1.1.3060.000438
ORF3a104P104SCctTct11B.1.1.3110.000358
ORF3a104P104PccTccG11B.1.1.3110.000358
ORF3a104P104LcCtcTt11B.1.1.3110.000358
ORF3a104P104delCCT---11B.1.1.3120.001912
ORF3a104P104SCctTct11B.1.1.3120.001912
ORF3a104P104delCCT---11B.1.1.3150.008475
ORF3a104P104HcCtcAt11B.1.1.3180.000302
ORF3a104P104LcCtcTt11B.1.1.3180.000302
ORF3a104P104LcCtcTt11B.1.1.3280.016949
ORF3a104P104SCctTct11B.1.1.3290.003846
ORF3a104P104QcCTcAA11B.1.1.330.000421
ORF3a104P104HcCTcAC11B.1.1.330.000421
ORF3a104P104SCctTct11B.1.1.3440.010753
ORF3a104P104LcCtcTt11B.1.1.3480.000796
ORF3a104P104SCctTct11B.1.1.3510.002793
ORF3a104P104PccTccG11B.1.1.3690.000446
ORF3a104P104PccTccC11B.1.1.370.000193
ORF3a104P104LcCtcTt11B.1.1.3720.000689
ORF3a104P104SCctTct11B.1.1.3850.004464
ORF3a104P104LcCtcTt11B.1.1.3880.045455
ORF3a104P104LcCtcTt11B.1.1.390.00051
ORF3a104P104PccTccC11B.1.1.390.00051
ORF3a104P104delCCT---11B.1.1.4090.002833
ORF3a104P104delCCT---11B.1.1.4200.001006
ORF3a104P104HcCtcAt11B.1.1.4320.001266
ORF3a104P104LcCtcTt11B.1.1.4460.076923
ORF3a104P104LcCtcTt11B.1.1.4480.002033
ORF3a104P104SCctTct11B.1.1.470.005348
ORF3a104P104LcCtcTt11B.1.1.500.000679
ORF3a104P104SCctTct11B.1.1.5150.02
ORF3a104P104TCctAct11B.1.1.5190.00004
ORF3a104P104del1ccTcc-11B.1.1.5190.00004
ORF3a104P104LcCtcTt11B.1.1.5240.020833
ORF3a104P104RcCtcGt11B.1.1.5260.003546
ORF3a104P104LcCtcTt11B.1.1.5280.004808
ORF3a104P104ACctGct11B.1.1.70.000001
ORF3a104P104WCCTTGG11B.1.1.70.000001
ORF3a104P104LcCtcTt11B.1.1.700.000341
ORF3a104P104SCctTct11B.1.1150.021739
ORF3a104P104LcCtcTt11B.1.1390.000733
ORF3a104P104PccTccA11B.1.140.017544
ORF3a104P104delCCT---11B.1.1400.018868
ORF3a104P104HcCtcAt11B.1.1470.000756
ORF3a104P104delCCT---11B.1.1570.002985
ORF3a104P104delCCT---11B.1.1600.000031
ORF3a104P104PccTccG11B.1.1600.000031
ORF3a104P104LcCtcTt11B.1.160.140.002119
ORF3a104P104PccTccG11B.1.160.150.00495
ORF3a104P104delCCT---11B.1.160.230.004831
ORF3a104P104SCctTct11B.1.160.250.011111
ORF3a104P104LcCtcTt11B.1.160.320.004292
ORF3a104P104HcCtcAt11B.1.1770.000013
ORF3a104P104delCCT---11B.1.177.180.00116
ORF3a104P104LcCtcTt11B.1.177.210.000076
ORF3a104P104PccTccG11B.1.177.320.00135
ORF3a104P104SCctTct11B.1.177.410.0025
ORF3a104P104PccTccC11B.1.177.440.000519
ORF3a104P104SCctTct11B.1.177.440.000519
ORF3a104P104LcCtcTt11B.1.177.500.004695
ORF3a104P104PccTccC11B.1.177.500.004695
ORF3a104P104delCCT---11B.1.177.510.004566
ORF3a104P104LcCtcTt11B.1.177.520.001757
ORF3a104P104delCCT---11B.1.177.620.001192
ORF3a104P104LcCtcTt11B.1.177.620.001192
ORF3a104P104LcCtcTt11B.1.177.750.001041
ORF3a104P104SCctTct11B.1.177.750.001041
ORF3a104P104LcCtcTt11B.1.177.830.001481
ORF3a104P104HcCtcAt11B.1.177.860.000183
ORF3a104P104LcCtcTt11B.1.177.860.000183
ORF3a104P104LcCtcTt11B.1.177.870.000728
ORF3a104P104FCCtTTt11B.1.20.000009
ORF3a104P104FCCtTTt11B.1.2140.003663
ORF3a104P104LcCtcTt11B.1.2180.005155
ORF3a104P104PccTccC11B.1.2340.000132
ORF3a104P104PccTccC11B.1.2360.002053
ORF3a104P104TCctAct11B.1.2430.00007
ORF3a104P104RcCtcGt11B.1.2430.00007
ORF3a104P104LcCtcTt11B.1.243.10.022222
ORF3a104P104SCctTct11B.1.258.110.000396
ORF3a104P104PccTccC11B.1.258.110.000396
ORF3a104P104SCctTct11B.1.258.120.007874
ORF3a104P104LcCtcTt11B.1.258.150.018868
ORF3a104P104PccTccC11B.1.258.170.000104
ORF3a104P104LcCtcTt11B.1.2980.002114
ORF3a104P104LcCtcTt11B.1.3180.038462
ORF3a104P104PccTccC11B.1.3200.001245
ORF3a104P104LcCtcTt11B.1.3240.001605
ORF3a104P104LcCtcTt11B.1.3360.002439
ORF3a104P104SCctTct11B.1.3360.002439
ORF3a104P104LcCtcTt11B.1.3400.004292
ORF3a104P104LcCtcTt11B.1.3500.002933
ORF3a104P104LcCtcTt11B.1.3560.001727
ORF3a104P104HcCtcAt11B.1.3620.001541
ORF3a104P104delCCT---11B.1.3620.001541
ORF3a104P104del1ccTcc-11B.1.3620.001541
ORF3a104P104LcCtcTt11B.1.3670.000792
ORF3a104P104FCCtTTt11B.1.3670.000792
ORF3a104P104SCctTct11B.1.3670.000792
ORF3a104P104LcCtcTt11B.1.3750.00082
ORF3a104P104HcCtcAt11B.1.3810.007812
ORF3a104P104SCctTct11B.1.3910.001127
ORF3a104P104LcCtcTt11B.1.3960.000706
ORF3a104P104SCctTct11B.1.3990.001934
ORF3a104P104LcCtcTt11B.1.3990.001934
ORF3a104P104LcCtcTt11B.1.4010.008197
ORF3a104P104TCctAct11B.1.4080.00369
ORF3a104P104SCctTct11B.1.4090.000781
ORF3a104P104delCCT---11B.1.416.10.001563
ORF3a104P104SCctTct11B.1.4220.000812
ORF3a104P104TCctAct11B.1.4250.002994
ORF3a104P104HcCtcAt11B.1.4290.000024
ORF3a104P104PccTccC11B.1.4290.000024
ORF3a104P104SCctTct11B.1.438.10.000107
ORF3a104P104LcCtcTt11B.1.438.10.000107
ORF3a104P104PccTccG11B.1.438.10.000107
ORF3a104P104TCctAct11B.1.4590.004082
ORF3a104P104SCctTct11B.1.466.20.000391
ORF3a104P104SCctTct11B.1.4700.001404
ORF3a104P104LcCtcTt11B.1.4740.001901
ORF3a104P104SCctTct11B.1.4990.00105
ORF3a104P104LcCtcTt11B.1.5090.000866
ORF3a104P104LcCtcTt11B.1.5300.007143
ORF3a104P104LcCtcTt11B.1.5330.009615
ORF3a104P104SCctTct11B.1.5550.022222
ORF3a104P104LcCtcTt11B.1.5600.00463
ORF3a104P104LcCtcTt11B.1.5640.000426
ORF3a104P104LcCtcTt11B.1.5650.00081
ORF3a104P104SCctTct11B.1.5650.00081
ORF3a104P104LcCtcTt11B.1.5760.000907
ORF3a104P104SCctTct11B.1.5800.004065
ORF3a104P104SCctTct11B.1.5820.000491
ORF3a104P104SCctTct11B.1.5950.000261
ORF3a104P104PccTccC11B.1.5950.000261
ORF3a104P104delCCT---11B.1.5960.000087
ORF3a104P104RcCtcGt11B.1.5960.000087
ORF3a104P104PccTccC11B.1.6060.006024
ORF3a104P104LcCtcTt11B.1.617.10.000129
ORF3a104P104PccTccC11B.1.617.10.000129
ORF3a104P104SCctTct11B.1.617.10.000129
ORF3a104P104delCCT---11B.1.617.10.000129
ORF3a104P104del1ccTcc-11B.1.617.20.000004
ORF3a104P104SCctTct11B.1.6200.000946
ORF3a104P104del1ccTcc-11B.1.6210.000089
ORF3a104P104LcCtcTt11B.1.621.10.000506
ORF3a104P104PccTccG11B.1.621.10.000506
ORF3a104P104LcCtcTt11B.1.6230.000536
ORF3a104P104LcCtcTt11B.1.6270.00202
ORF3a104P104LcCtcTt11B.1.6280.000352
ORF3a104P104FCCtTTt11B.1.6280.000352
ORF3a104P104SCctTct11B.1.6310.003367
ORF3a104P104delCCT---11B.1.6380.052632
ORF3a104P104LcCtcTt11B.1.9.40.006135
ORF3a104P104LcCtcTt11B.1.9.50.005682
ORF3a104P104NCCtAAt11B.1.910.002075
ORF3a104P104XCCTTAG11B.1.910.002075
ORF3a104P104YCCtTAt11B.1.910.002075
ORF3a104P104KCCTAAG11B.1.910.002075
ORF3a104P104PccTccC11B.1.910.002075
ORF3a104P104LcCtcTt11B.30.000831
ORF3a104P104TCctAct11B.400.000364
ORF3a104P104LcCtcTt11B.400.000364
ORF3a104P104HcCtcAt11B.550.00295
ORF3a104P104LcCtcTt11B.60.00091
ORF3a104P104LcCtcTt11C.140.004329
ORF3a104P104LcCtcTt11C.20.016129
ORF3a104P104del1ccTcc-11C.36.30.000567
ORF3a104P104SCctTct11C.36.30.000567
ORF3a104P104LcCtcTt11C.36.3.10.002717
ORF3a104P104SCctTct11C.390.018868
ORF3a104P104FCCtTTt11P.10.000016
ORF3a104P104LcCtcTt11P.1.10.000318
ORF3a104P104LcCtcTt11P.1.120.000484
ORF3a104P104PccTccG11P.1.120.000484
ORF3a104P104PccTccC11P.1.140.000048
ORF3a104P104RcCtcGt11P.1.140.000048
ORF3a104P104HcCtcAt11P.1.170.000162
ORF3a104P104SCctTct11P.1.170.000162
ORF3a104P104LcCtcTt11P.1.70.000319
ORF3a104P104PccTccC11P.20.000187
ORF3a104P104PccTccG11Q.10.000126
ORF3a104P104delCCT---11Q.40.000455
ORF3a104P104TCctAct11Q.80.000165
ORF3a104P104SCctTct11R.10.00009
ORF3a104P104del1ccTcc-11R.10.00009
ORF3a104P104delCCT---11U.30.003861