CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 100 | G100G | syn | ggC | ggT | 1117 | 1082 | 0.968666 | 25690-25692 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 100 | G100G | ggC | ggT | 1082 | 1117 | All | 0.000207 |
ORF3a | 100 | G100G | ggC | ggT | 265 | 267 | AY.4 | 0.000412 |
ORF3a | 100 | G100G | ggC | ggT | 112 | 114 | B.1.1.7 | 0.0001 |
ORF3a | 100 | G100G | ggC | ggT | 57 | 57 | B.1.14 | 1 |
ORF3a | 100 | G100G | ggC | ggT | 54 | 54 | B.1.177 | 0.000711 |
ORF3a | 100 | G100G | ggC | ggT | 54 | 54 | B.1.637 | 0.003946 |
ORF3a | 100 | G100G | ggC | ggT | 50 | 50 | AY.103 | 0.00031 |
ORF3a | 100 | G100G | ggC | ggT | 36 | 36 | AY.26 | 0.001019 |
ORF3a | 100 | G100G | ggC | ggT | 33 | 36 | B.1.617.2 | 0.000124 |
ORF3a | 100 | G100G | ggC | ggT | 29 | 29 | AY.99.2 | 0.002673 |
ORF3a | 100 | G100G | ggC | ggT | 27 | 27 | B.1.527 | 0.1 |
ORF3a | 100 | G100G | ggC | ggT | 22 | 22 | AY.25 | 0.000132 |
ORF3a | 100 | G100G | ggC | ggT | 21 | 22 | P.1 | 0.000331 |
ORF3a | 100 | G100G | ggC | ggT | 21 | 21 | B.1.36.18 | 0.008824 |
ORF3a | 100 | G100G | ggC | ggT | 19 | 19 | AY.116.1 | 0.005917 |
ORF3a | 100 | G100G | ggC | ggT | 18 | 18 | AY.29 | 0.000284 |
ORF3a | 100 | G100G | ggC | ggT | 16 | 17 | B.1.351 | 0.000476 |
ORF3a | 100 | G100G | ggC | ggT | 8 | 10 | AY.43 | 0.000035 |
ORF3a | 100 | G100G | ggC | ggT | 10 | 10 | AY.44 | 0.000061 |
ORF3a | 100 | G100G | ggC | ggT | 10 | 10 | AY.45 | 0.001217 |
ORF3a | 100 | G100G | ggC | ggT | 8 | 10 | B.1 | 0.000073 |
ORF3a | 100 | G100G | ggC | ggT | 10 | 10 | B.1.2 | 0.000088 |
ORF3a | 100 | G100G | ggC | ggT | 10 | 10 | B.1.36.24 | 0.061728 |
ORF3a | 100 | G100G | ggC | ggT | 5 | 9 | B.1.1 | 0.000091 |
ORF3a | 100 | G100G | ggC | ggT | 9 | 9 | B.1.177.86 | 0.001651 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 8 | 0.111111 | |
ORF3a | 100 | G100G | ggC | ggT | 8 | 8 | AY.3 | 0.00008 |
ORF3a | 100 | G100G | ggC | ggT | 8 | 8 | AY.42 | 0.000322 |
ORF3a | 100 | G100G | ggC | ggT | 7 | 7 | AY.46.2 | 0.004447 |
ORF3a | 100 | G100G | ggC | ggT | 6 | 6 | AY.100 | 0.000276 |
ORF3a | 100 | G100G | ggC | ggT | 6 | 6 | AY.13 | 0.000966 |
ORF3a | 100 | G100G | ggC | ggT | 5 | 6 | B.1.160 | 0.000156 |
ORF3a | 100 | G100G | ggC | ggT | 6 | 6 | B.1.526 | 0.000141 |
ORF3a | 100 | G100G | ggC | ggT | 6 | 6 | B.1.617.1 | 0.000774 |
ORF3a | 100 | G100G | ggC | ggT | 4 | 5 | AY.102 | 0.000106 |
ORF3a | 100 | G100G | ggC | ggT | 5 | 5 | AY.113 | 0.000712 |
ORF3a | 100 | G100G | ggC | ggT | 4 | 5 | AY.118 | 0.000251 |
ORF3a | 100 | G100G | ggC | ggT | 3 | 5 | AY.39 | 0.000074 |
ORF3a | 100 | G100G | ggC | ggT | 5 | 5 | AY.4.2 | 0.000108 |
ORF3a | 100 | G100G | ggC | ggT | 5 | 5 | B.1.1.397 | 0.011261 |
ORF3a | 100 | G100G | ggC | ggT | 5 | 5 | B.1.221 | 0.000355 |
ORF3a | 100 | G100G | ggC | ggT | 5 | 5 | B.1.429 | 0.000118 |
ORF3a | 100 | G100G | ggC | ggT | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 100 | G100G | ggC | ggT | 3 | 3 | AY.4.4 | 0.001227 |
ORF3a | 100 | G100G | ggC | ggT | 3 | 3 | AY.9.1 | 0.000251 |
ORF3a | 100 | G100G | ggC | ggT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 3 | B.1.1.519 | 0.000079 |
ORF3a | 100 | G100G | ggC | ggT | 3 | 3 | B.1.36 | 0.000438 |
ORF3a | 100 | G100G | ggC | ggT | 3 | 3 | B.55 | 0.00885 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | AY.2 | 0.000712 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | AY.20 | 0.000078 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | AY.4.1 | 0.001475 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | AY.47 | 0.000062 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | AY.61 | 0.00021 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | AY.9.2 | 0.000073 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | B.1.397 | 0.009709 |
ORF3a | 100 | G100G | ggC | ggT | 2 | 2 | C.37 | 0.000232 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | A.2 | 0.000662 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | A.2.4 | 0.003367 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AD.2 | 0.000219 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.101 | 0.00049 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.106 | 0.000335 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.108 | 0.001103 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.116 | 0.000287 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.117 | 0.000085 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.120 | 0.000037 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.16.1 | 0.00047 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.23 | 0.00007 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.27 | 0.000065 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.32 | 0.000532 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.33 | 0.000067 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.34 | 0.000097 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.39.1 | 0.00004 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.51 | 0.000909 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.52 | 0.000814 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.54 | 0.000095 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.59 | 0.00053 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.6 | 0.000041 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.7.1 | 0.000113 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | AY.88 | 0.000884 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B | 0.000128 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.177.14 | 0.006098 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.206 | 0.000816 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.210 | 0.002132 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.240 | 0.000216 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.298 | 0.002114 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.396 | 0.000706 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.416 | 0.001269 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.469 | 0.00361 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.525 | 0.000113 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.1.575 | 0.000303 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | B.6.6 | 0.000889 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | C.26 | 0.007353 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | C.30.1 | 0.006711 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | N.3 | 0.005814 |
ORF3a | 100 | G100G | ggC | ggT | 1 | 1 | Q.6 | 0.006623 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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