CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF3a | 100 | G100C | nonsyn | Ggc | Tgc | 19624 | 19520 | 0.9947 | 25690-25692 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF3a | 100 | G100C | Ggc | Tgc | 19520 | 19624 | All | 0.003733 |
ORF3a | 100 | G100C | Ggc | Tgc | 9171 | 9271 | B.1.1.7 | 0.00821 |
ORF3a | 100 | G100C | Ggc | Tgc | 2353 | 2353 | AY.4 | 0.003662 |
ORF3a | 100 | G100C | Ggc | Tgc | 1000 | 1000 | AY.103 | 0.006209 |
ORF3a | 100 | G100C | Ggc | Tgc | 620 | 622 | B.1.617.2 | 0.002335 |
ORF3a | 100 | G100C | Ggc | Tgc | 521 | 521 | AY.3 | 0.005182 |
ORF3a | 100 | G100C | Ggc | Tgc | 484 | 484 | AY.43 | 0.002144 |
ORF3a | 100 | G100C | Ggc | Tgc | 472 | 472 | AY.44 | 0.002873 |
ORF3a | 100 | G100C | Ggc | Tgc | 329 | 329 | B.1.2 | 0.002897 |
ORF3a | 100 | G100C | Ggc | Tgc | 237 | 237 | AY.42 | 0.009535 |
ORF3a | 100 | G100C | Ggc | Tgc | 212 | 212 | B.1.177 | 0.002792 |
ORF3a | 100 | G100C | Ggc | Tgc | 182 | 182 | AY.102 | 0.004826 |
ORF3a | 100 | G100C | Ggc | Tgc | 181 | 181 | B.1 | 0.001658 |
ORF3a | 100 | G100C | Ggc | Tgc | 170 | 170 | AY.25 | 0.001023 |
ORF3a | 100 | G100C | Ggc | Tgc | 136 | 136 | B.1.1 | 0.002467 |
ORF3a | 100 | G100C | Ggc | Tgc | 134 | 134 | AY.39 | 0.003311 |
ORF3a | 100 | G100C | Ggc | Tgc | 132 | 132 | AY.99.2 | 0.012165 |
ORF3a | 100 | G100C | Ggc | Tgc | 118 | 118 | AY.9.1 | 0.009879 |
ORF3a | 100 | G100C | Ggc | Tgc | 116 | 116 | AY.120 | 0.004313 |
ORF3a | 100 | G100C | Ggc | Tgc | 107 | 107 | AY.26 | 0.003029 |
ORF3a | 100 | G100C | Ggc | Tgc | 100 | 100 | AY.118 | 0.006265 |
ORF3a | 100 | G100C | Ggc | Tgc | 100 | 100 | B.1.177.27 | 0.943396 |
ORF3a | 100 | G100C | Ggc | Tgc | 99 | 99 | Q.1 | 0.012506 |
ORF3a | 100 | G100C | Ggc | Tgc | 91 | 91 | B.1.429 | 0.002141 |
ORF3a | 100 | G100C | Ggc | Tgc | 84 | 84 | AY.5 | 0.001735 |
ORF3a | 100 | G100C | Ggc | Tgc | 81 | 81 | B.1.258.17 | 0.008422 |
ORF3a | 100 | G100C | Ggc | Tgc | 79 | 79 | AY.109 | 0.058432 |
ORF3a | 100 | G100C | Ggc | Tgc | 76 | 76 | B.1.351 | 0.002259 |
ORF3a | 100 | G100C | Ggc | Tgc | 75 | 75 | B.1.1.222 | 0.0153 |
ORF3a | 100 | G100C | Ggc | Tgc | 68 | 68 | P.1 | 0.001071 |
ORF3a | 100 | G100C | Ggc | Tgc | 63 | 63 | AY.33 | 0.004207 |
ORF3a | 100 | G100C | Ggc | Tgc | 61 | 61 | B.1.400 | 0.026169 |
ORF3a | 100 | G100C | Ggc | Tgc | 54 | 54 | B.1.1.519 | 0.002144 |
ORF3a | 100 | G100C | Ggc | Tgc | 52 | 52 | B.1.160 | 0.001622 |
ORF3a | 100 | G100C | Ggc | Tgc | 48 | 48 | B.1.177.16 | 0.031894 |
ORF3a | 100 | G100C | Ggc | Tgc | 40 | 40 | AY.4.2.1 | 0.005959 |
ORF3a | 100 | G100C | Ggc | Tgc | 39 | 39 | AY.98.1 | 0.001889 |
ORF3a | 100 | G100C | Ggc | Tgc | 37 | 37 | AY.74 | 0.004279 |
ORF3a | 100 | G100C | Ggc | Tgc | 32 | 32 | B.1.1.306 | 0.014029 |
ORF3a | 100 | G100C | Ggc | Tgc | 30 | 30 | AY.91 | 0.021914 |
ORF3a | 100 | G100C | Ggc | Tgc | 30 | 30 | B.1.1.12 | 0.223881 |
ORF3a | 100 | G100C | Ggc | Tgc | 30 | 30 | C.36 | 0.027322 |
ORF3a | 100 | G100C | Ggc | Tgc | 28 | 28 | AY.34 | 0.002715 |
ORF3a | 100 | G100C | Ggc | Tgc | 28 | 28 | B.1.258 | 0.001863 |
ORF3a | 100 | G100C | Ggc | Tgc | 28 | 28 | C.37 | 0.00325 |
ORF3a | 100 | G100C | Ggc | Tgc | 27 | 27 | AY.46 | 0.00281 |
ORF3a | 100 | G100C | Ggc | Tgc | 27 | 27 | AY.75 | 0.001513 |
ORF3a | 100 | G100C | Ggc | Tgc | 27 | 27 | AY.9.2 | 0.000992 |
ORF3a | 100 | G100C | Ggc | Tgc | 27 | 27 | B.1.399 | 0.052224 |
ORF3a | 100 | G100C | Ggc | Tgc | 26 | 26 | AY.106 | 0.008707 |
ORF3a | 100 | G100C | Ggc | Tgc | 25 | 25 | AE.8 | 0.012225 |
ORF3a | 100 | G100C | Ggc | Tgc | 25 | 25 | AY.29 | 0.000394 |
ORF3a | 100 | G100C | Ggc | Tgc | 25 | 25 | B.1.36 | 0.003648 |
ORF3a | 100 | G100C | Ggc | Tgc | 23 | 23 | B.1.595 | 0.006002 |
ORF3a | 100 | G100C | Ggc | Tgc | 21 | 21 | P.1.17 | 0.003397 |
ORF3a | 100 | G100C | Ggc | Tgc | 20 | 20 | B.1.1.226 | 0.116279 |
ORF3a | 100 | G100C | Ggc | Tgc | 20 | 20 | Q.3 | 0.002901 |
ORF3a | 100 | G100C | Ggc | Tgc | 19 | 19 | AY.100 | 0.000874 |
ORF3a | 100 | G100C | Ggc | Tgc | 19 | 19 | AY.119 | 0.000671 |
ORF3a | 100 | G100C | Ggc | Tgc | 19 | 19 | B.1.232 | 0.01021 |
ORF3a | 100 | G100C | Ggc | Tgc | 19 | 19 | R.1 | 0.00171 |
ORF3a | 100 | G100C | Ggc | Tgc | 18 | 18 | AY.117 | 0.001521 |
ORF3a | 100 | G100C | Ggc | Tgc | 18 | 18 | B.1.1.241 | 0.037267 |
ORF3a | 100 | G100C | Ggc | Tgc | 17 | 17 | AY.5.4 | 0.004704 |
ORF3a | 100 | G100C | Ggc | Tgc | 17 | 17 | AY.7 | 0.003332 |
ORF3a | 100 | G100C | Ggc | Tgc | 17 | 17 | B.1.1.294 | 0.021519 |
ORF3a | 100 | G100C | Ggc | Tgc | 17 | 17 | B.1.351.2 | 0.005144 |
ORF3a | 100 | G100C | Ggc | Tgc | 17 | 17 | P.1.17.1 | 0.014873 |
ORF3a | 100 | G100C | Ggc | Tgc | 16 | 16 | AY.4.2 | 0.000347 |
ORF3a | 100 | G100C | Ggc | Tgc | 16 | 16 | B.1.509 | 0.013853 |
ORF3a | 100 | G100C | Ggc | Tgc | 16 | 16 | B.1.526 | 0.000376 |
ORF3a | 100 | G100C | Ggc | Tgc | 16 | 16 | P.1.14 | 0.000765 |
ORF3a | 100 | G100C | Ggc | Tgc | 15 | 15 | AY.20 | 0.000583 |
ORF3a | 100 | G100C | Ggc | Tgc | 15 | 15 | AY.47 | 0.000467 |
ORF3a | 100 | G100C | Ggc | Tgc | 15 | 15 | AY.84 | 0.006562 |
ORF3a | 100 | G100C | Ggc | Tgc | 15 | 15 | B.1.561 | 0.005955 |
ORF3a | 100 | G100C | Ggc | Tgc | 14 | 14 | AY.23 | 0.000976 |
ORF3a | 100 | G100C | Ggc | Tgc | 14 | 14 | AY.59 | 0.007415 |
ORF3a | 100 | G100C | Ggc | Tgc | 13 | 13 | AY.61 | 0.001362 |
ORF3a | 100 | G100C | Ggc | Tgc | 13 | 13 | B.1.582 | 0.006379 |
ORF3a | 100 | G100C | Ggc | Tgc | 13 | 13 | D.2 | 0.000976 |
ORF3a | 100 | G100C | Ggc | Tgc | 13 | 13 | Q.8 | 0.002144 |
ORF3a | 100 | G100C | Ggc | Tgc | 12 | 12 | AY.114 | 0.002773 |
ORF3a | 100 | G100C | Ggc | Tgc | 12 | 12 | AY.70 | 0.002502 |
ORF3a | 100 | G100C | Ggc | Tgc | 12 | 12 | AY.73 | 0.007984 |
ORF3a | 100 | G100C | Ggc | Tgc | 12 | 12 | AY.9 | 0.000811 |
ORF3a | 100 | G100C | Ggc | Tgc | 12 | 12 | B.1.1.189 | 0.018154 |
ORF3a | 100 | G100C | Ggc | Tgc | 12 | 12 | B.1.1.312 | 0.022945 |
ORF3a | 100 | G100C | Ggc | Tgc | 12 | 12 | B.1.362 | 0.01849 |
ORF3a | 100 | G100C | Ggc | Tgc | 11 | 11 | B.1.1.16 | 0.611111 |
ORF3a | 100 | G100C | Ggc | Tgc | 11 | 11 | B.1.1.318 | 0.003319 |
ORF3a | 100 | G100C | Ggc | Tgc | 11 | 11 | B.1.210 | 0.023454 |
ORF3a | 100 | G100C | Ggc | Tgc | 10 | 11 | B.1.221 | 0.00071 |
ORF3a | 100 | G100C | Ggc | Tgc | 10 | 10 | AY.6 | 0.000411 |
ORF3a | 100 | G100C | Ggc | Tgc | 10 | 10 | B.1.1.121 | 0.024272 |
ORF3a | 100 | G100C | Ggc | Tgc | 10 | 10 | B.1.234 | 0.001319 |
ORF3a | 100 | G100C | Ggc | Tgc | 10 | 10 | B.1.427 | 0.000505 |
ORF3a | 100 | G100C | Ggc | Tgc | 10 | 10 | C.16 | 0.010604 |
ORF3a | 100 | G100C | Ggc | Tgc | 9 | 9 | AY.75.1 | 0.001623 |
ORF3a | 100 | G100C | Ggc | Tgc | 9 | 9 | B.1.243 | 0.000626 |
ORF3a | 100 | G100C | Ggc | Tgc | 9 | 9 | B.1.36.29 | 0.004656 |
ORF3a | 100 | G100C | Ggc | Tgc | 9 | 9 | B.1.428.2 | 0.3 |
ORF3a | 100 | G100C | Ggc | Tgc | 9 | 9 | B.1.617.1 | 0.001161 |
ORF3a | 100 | G100C | Ggc | Tgc | 8 | 8 | AY.3.1 | 0.000682 |
ORF3a | 100 | G100C | Ggc | Tgc | 8 | 8 | AY.39.1 | 0.000317 |
ORF3a | 100 | G100C | Ggc | Tgc | 8 | 8 | B.1.474 | 0.015209 |
ORF3a | 100 | G100C | Ggc | Tgc | 8 | 8 | B.1.564 | 0.003407 |
ORF3a | 100 | G100C | Ggc | Tgc | 7 | 7 | AY.113 | 0.000997 |
ORF3a | 100 | G100C | Ggc | Tgc | 7 | 7 | AY.46.6 | 0.000505 |
ORF3a | 100 | G100C | Ggc | Tgc | 7 | 7 | B.1.1.159 | 0.03271 |
ORF3a | 100 | G100C | Ggc | Tgc | 7 | 7 | B.1.1.216 | 0.006233 |
ORF3a | 100 | G100C | Ggc | Tgc | 7 | 7 | B.1.1.232 | 0.012704 |
ORF3a | 100 | G100C | Ggc | Tgc | 6 | 6 | AY.56 | 0.009631 |
ORF3a | 100 | G100C | Ggc | Tgc | 6 | 6 | AY.77 | 0.006764 |
ORF3a | 100 | G100C | Ggc | Tgc | 6 | 6 | B.1.1.317 | 0.00247 |
ORF3a | 100 | G100C | Ggc | Tgc | 6 | 6 | B.1.1.369 | 0.002677 |
ORF3a | 100 | G100C | Ggc | Tgc | 6 | 6 | B.1.1.50 | 0.004073 |
ORF3a | 100 | G100C | Ggc | Tgc | 6 | 6 | B.1.621 | 0.000531 |
ORF3a | 100 | G100C | Ggc | Tgc | 5 | 5 | AY.34.1 | 0.00255 |
ORF3a | 100 | G100C | Ggc | Tgc | 5 | 5 | AY.71 | 0.002375 |
ORF3a | 100 | G100C | Ggc | Tgc | 5 | 5 | AY.95 | 0.003805 |
ORF3a | 100 | G100C | Ggc | Tgc | 5 | 5 | B.1.1.153 | 0.005476 |
ORF3a | 100 | G100C | Ggc | Tgc | 5 | 5 | B.1.1.33 | 0.002104 |
ORF3a | 100 | G100C | Ggc | Tgc | 5 | 5 | B.1.1.486 | 0.007886 |
ORF3a | 100 | G100C | Ggc | Tgc | 5 | 5 | B.1.403 | 0.01634 |
ORF3a | 100 | G100C | Ggc | Tgc | 5 | 5 | B.1.411 | 0.018519 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | AY.16.1 | 0.00188 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | AY.19 | 0.004561 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | AY.24 | 0.001724 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | AY.54 | 0.000381 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | AY.68 | 0.001095 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | AY.7.1 | 0.000451 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | AY.98 | 0.000316 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | AY.99 | 0.004197 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | B.1.1.39 | 0.002039 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | B.1.36.17 | 0.001976 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | B.1.525 | 0.000453 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | B.1.591 | 0.042553 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | P.1.7 | 0.001277 |
ORF3a | 100 | G100C | Ggc | Tgc | 4 | 4 | P.2 | 0.000747 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 3 | 0.111111 | |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.108 | 0.003308 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.121 | 0.000406 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.13 | 0.000483 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.27 | 0.000194 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.36 | 0.000445 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.45 | 0.000365 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.46.4 | 0.000494 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.48 | 0.001395 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.49 | 0.009585 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | AY.53 | 0.000863 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.1.214 | 0.000166 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.1.286 | 0.008696 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.108 | 0.017442 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.128 | 0.001906 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.241 | 0.002435 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.369 | 0.000856 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.390 | 0.031915 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.396 | 0.002117 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.416 | 0.003807 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.441 | 0.028846 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.538 | 0.024194 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.558 | 0.013699 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.575 | 0.00091 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.609 | 0.001438 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.620 | 0.002838 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | B.1.621.1 | 0.001517 |
ORF3a | 100 | G100C | Ggc | Tgc | 3 | 3 | P.1.1 | 0.000953 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.101 | 0.000981 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.116 | 0.000574 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.12 | 0.000632 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.120.2 | 0.002571 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.14 | 0.000176 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.16 | 0.000759 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.29.1 | 0.000441 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.32 | 0.001065 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.4.3 | 0.001684 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.4.4 | 0.000818 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.4.5 | 0.000215 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.40 | 0.001929 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.46.2 | 0.001271 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.52 | 0.001629 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.58 | 0.001815 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.63 | 0.000774 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.81 | 0.003984 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.82 | 0.002714 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | AY.94 | 0.000885 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B | 0.000256 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.1.161 | 0.007067 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.1.163 | 0.015267 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.1.25 | 0.001137 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.1.256 | 0.027397 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.1.28 | 0.000622 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.1.326 | 0.003521 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.1.372 | 0.001377 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.127 | 0.004396 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.147 | 0.001512 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.177.4 | 0.000422 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.177.80 | 0.003824 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.177.82 | 0.000955 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.177.86 | 0.000367 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.179 | 0.007519 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.236 | 0.004107 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.311 | 0.000549 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.36.31 | 0.003503 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.36.8 | 0.002 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.576 | 0.001813 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.596 | 0.000174 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.605 | 0.011905 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.623 | 0.001073 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | B.1.637 | 0.000146 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | P.6 | 0.006289 |
ORF3a | 100 | G100C | Ggc | Tgc | 2 | 2 | Q.2 | 0.001227 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | A.2.2 | 0.001689 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | A.2.5 | 0.000499 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | A.29 | 0.005319 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | A.5 | 0.001923 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AE.4 | 0.043478 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.1 | 0.000396 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.104 | 0.001984 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.110 | 0.000113 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.115 | 0.005208 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.116.1 | 0.000311 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.120.1 | 0.000321 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.37 | 0.000316 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.41 | 0.000294 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.46.5 | 0.000198 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.5.1 | 0.003759 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.5.3 | 0.000337 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.50 | 0.000799 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.55 | 0.000917 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.62 | 0.000436 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.67 | 0.000464 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.85 | 0.000427 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.86 | 0.00083 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.89 | 0.004902 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.92 | 0.000287 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AY.93 | 0.000273 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | AZ.5 | 0.003509 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.129 | 0.009174 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.135 | 0.004695 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.155 | 0.071429 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.171 | 0.003676 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.192 | 0.002309 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.210 | 0.005714 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.219 | 0.005 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.265 | 0.003155 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.277 | 0.000759 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.322 | 0.008772 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.329 | 0.003846 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.337 | 0.003597 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.365 | 0.005587 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.368 | 0.003086 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.380 | 0.009804 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.388 | 0.045455 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.389 | 0.006061 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.442 | 0.018519 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.485 | 0.016667 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.51 | 0.001718 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.521 | 0.005348 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.523 | 0.001563 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.1.525 | 0.005464 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.139 | 0.000733 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.170 | 0.00431 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.177.35 | 0.000691 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.177.51 | 0.004566 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.177.56 | 0.000668 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.177.57 | 0.000281 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.177.63 | 0.002703 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.212 | 0.016667 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.239 | 0.001221 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.264 | 0.012346 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.301 | 0.005917 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.351.5 | 0.0006 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.36.12 | 0.009615 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.36.22 | 0.001208 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.36.27 | 0.000763 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.36.36 | 0.000602 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.36.38 | 0.001642 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.362.2 | 0.004717 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.428 | 0.00102 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.439 | 0.005917 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.453 | 0.003236 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.456 | 0.003268 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.470 | 0.001404 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.471 | 0.002732 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.497 | 0.000315 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.501 | 0.007353 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.517 | 0.000427 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.527 | 0.003704 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.540 | 0.009709 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.556 | 0.007519 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.567 | 0.003333 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.570 | 0.002941 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.577 | 0.000687 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.599 | 0.00365 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.619 | 0.000871 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.1.91 | 0.002075 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | B.40 | 0.000364 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | C.26 | 0.007353 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | L.3 | 0.003546 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | P.1.12 | 0.000484 |
ORF3a | 100 | G100C | Ggc | Tgc | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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