CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF3a : CodonNum = 100

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF3a	100	G100C		nonsyn	Ggc	Tgc	19624	19520	0.9947	25690-25692
ORF3a	100	G100C		nonsyn	GgC	TgT	19624	104	0.00529963	25690-25692
ORF3a	100	G100V		nonsyn	gGc	gTc	2458	2456	0.999186	25690-25692
ORF3a	100	G100V		nonsyn	gGC	gTA	2458	1	0.000406835	25690-25692
ORF3a	100	G100V		nonsyn	gGC	gTT	2458	1	0.000406835	25690-25692
ORF3a	100	G100D		nonsyn	gGc	gAc	1395	1394	0.999283	25690-25692
ORF3a	100	G100D		nonsyn	gGC	gAT	1395	1	0.000716846	25690-25692
ORF3a	100	G100G		syn	ggC	ggT	1117	1082	0.968666	25690-25692
ORF3a	100	G100G		syn	ggC	ggA	1117	20	0.0179051	25690-25692
ORF3a	100	G100G		syn	ggC	ggG	1117	15	0.0134288	25690-25692
ORF3a	100	G100S		nonsyn	Ggc	Agc	1068	1065	0.997191	25690-25692
ORF3a	100	G100S		nonsyn	GGc	TCc	1068	2	0.00187266	25690-25692
ORF3a	100	G100S		nonsyn	GGC	TCA	1068	1	0.00093633	25690-25692
ORF3a	100	G100R		nonsyn	Ggc	Cgc	200	193	0.965	25690-25692
ORF3a	100	G100R		nonsyn	GgC	AgA	200	2	0.01	25690-25692
ORF3a	100	G100R		nonsyn	GgC	CgA	200	2	0.01	25690-25692
ORF3a	100	G100R		nonsyn	GgC	AgG	200	2	0.01	25690-25692
ORF3a	100	G100R		nonsyn	GgC	CgT	200	1	0.005	25690-25692
ORF3a	100	G100del		del	GGC	---	146	146	1	25690-25692
ORF3a	100	G100A		nonsyn	gGc	gCc	26	24	0.923077	25690-25692
ORF3a	100	G100A		nonsyn	gGC	gCT	26	1	0.0384615	25690-25692
ORF3a	100	G100A		nonsyn	gGC	gCA	26	1	0.0384615	25690-25692
ORF3a	100	G100F		nonsyn	GGc	TTc	18	17	0.944444	25690-25692
ORF3a	100	G100F		nonsyn	GGC	TTT	18	1	0.0555556	25690-25692
ORF3a	100	G100N		nonsyn	GGc	AAc	5	5	1	25690-25692
ORF3a	100	G100K		nonsyn	GGC	AAA	5	3	0.6	25690-25692
ORF3a	100	G100K		nonsyn	GGC	AAG	5	2	0.4	25690-25692
ORF3a	100	G100X		nonsyn	GgC	TgA	4	3	0.75	25690-25692
ORF3a	100	G100X		nonsyn	GGC	TAA	4	1	0.25	25690-25692
ORF3a	100	G100del1		del	Ggc	-gc	3	2	0.666667	25690-25692
ORF3a	100	G100E		nonsyn	gGC	gAG	3	2	0.666667	25690-25692
ORF3a	100	G100E		nonsyn	gGC	gAA	3	1	0.333333	25690-25692
ORF3a	100	G100del1		del	ggC	gg-	3	1	0.333333	25690-25692
ORF3a	100	G100I		nonsyn	GGc	ATc	2	2	1	25690-25692
ORF3a	100	G100L		nonsyn	GGC	CTT	2	1	0.5	25690-25692
ORF3a	100	G100L		nonsyn	GGc	CTc	2	1	0.5	25690-25692
ORF3a	100	G100del2		del	gGC	g--	1	1	1	25690-25692
ORF3a	100	G100W		nonsyn	GgC	TgG	1	1	1	25690-25692
ORF3a	100	G100Y		nonsyn	GGc	TAc	1	1	1	25690-25692
ORF3a	100	G100H		nonsyn	GGc	CAc	1	1	1	25690-25692
ORF3a	100	G100Q		nonsyn	GGC	CAA	1	1	1	25690-25692

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF3a	100	G100C	Ggc	Tgc	19520	19624	All	0.003733
ORF3a	100	G100C	GgC	TgT	104	19624	All	0.00002
ORF3a	100	G100C	Ggc	Tgc	9171	9271	B.1.1.7	0.00821
ORF3a	100	G100C	GgC	TgT	100	9271	B.1.1.7	0.00009
ORF3a	100	G100V	gGc	gTc	2456	2458	All	0.00047
ORF3a	100	G100V	gGC	gTA	1	2458	All	0
ORF3a	100	G100V	gGC	gTT	1	2458	All	0
ORF3a	100	G100C	Ggc	Tgc	2353	2353	AY.4	0.003662
ORF3a	100	G100V	gGc	gTc	1403	1403	AY.64	0.835119
ORF3a	100	G100D	gGc	gAc	1394	1395	All	0.000267
ORF3a	100	G100D	gGC	gAT	1	1395	All	0
ORF3a	100	G100G	ggC	ggT	1082	1117	All	0.000207
ORF3a	100	G100G	ggC	ggA	20	1117	All	0.000004
ORF3a	100	G100G	ggC	ggG	15	1117	All	0.000003
ORF3a	100	G100S	Ggc	Agc	1065	1068	All	0.000204
ORF3a	100	G100S	GGc	TCc	2	1068	All	0
ORF3a	100	G100S	GGC	TCA	1	1068	All	0
ORF3a	100	G100C	Ggc	Tgc	1000	1000	AY.103	0.006209
ORF3a	100	G100D	gGc	gAc	917	917	B.1.1.7	0.000821
ORF3a	100	G100C	Ggc	Tgc	620	622	B.1.617.2	0.002335
ORF3a	100	G100C	GgC	TgT	2	622	B.1.617.2	0.000008
ORF3a	100	G100C	Ggc	Tgc	521	521	AY.3	0.005182
ORF3a	100	G100S	Ggc	Agc	491	491	AY.25	0.002953
ORF3a	100	G100C	Ggc	Tgc	484	484	AY.43	0.002144
ORF3a	100	G100C	Ggc	Tgc	472	472	AY.44	0.002873
ORF3a	100	G100C	Ggc	Tgc	329	329	B.1.2	0.002897
ORF3a	100	G100V	gGc	gTc	319	319	B.1.1.7	0.000286
ORF3a	100	G100G	ggC	ggT	265	267	AY.4	0.000412
ORF3a	100	G100G	ggC	ggA	2	267	AY.4	0.000003
ORF3a	100	G100C	Ggc	Tgc	237	237	AY.42	0.009535
ORF3a	100	G100C	Ggc	Tgc	212	212	B.1.177	0.002792
ORF3a	100	G100R	Ggc	Cgc	193	200	All	0.000037
ORF3a	100	G100R	GgC	AgA	2	200	All	0
ORF3a	100	G100R	GgC	AgG	2	200	All	0
ORF3a	100	G100R	GgC	CgA	2	200	All	0
ORF3a	100	G100R	GgC	CgT	1	200	All	0
ORF3a	100	G100C	Ggc	Tgc	182	182	AY.102	0.004826
ORF3a	100	G100C	Ggc	Tgc	181	181	B.1	0.001658
ORF3a	100	G100C	Ggc	Tgc	170	170	AY.25	0.001023
ORF3a	100	G100del	GGC	---	146	146	All	0.000028
ORF3a	100	G100C	Ggc	Tgc	136	136	B.1.1	0.002467
ORF3a	100	G100C	Ggc	Tgc	134	134	AY.39	0.003311
ORF3a	100	G100C	Ggc	Tgc	132	132	AY.99.2	0.012165
ORF3a	100	G100D	gGc	gAc	123	123	B.1.258.11	0.048751
ORF3a	100	G100D	gGc	gAc	119	119	B.1.617.1	0.015347
ORF3a	100	G100C	Ggc	Tgc	118	118	AY.9.1	0.009879
ORF3a	100	G100C	Ggc	Tgc	116	116	AY.120	0.004313
ORF3a	100	G100R	Ggc	Cgc	116	116	AY.61	0.012154
ORF3a	100	G100G	ggC	ggT	112	114	B.1.1.7	0.0001
ORF3a	100	G100G	ggC	ggA	2	114	B.1.1.7	0.000002
ORF3a	100	G100C	Ggc	Tgc	107	107	AY.26	0.003029
ORF3a	100	G100C	Ggc	Tgc	100	100	AY.118	0.006265
ORF3a	100	G100C	Ggc	Tgc	100	100	B.1.177.27	0.943396
ORF3a	100	G100C	Ggc	Tgc	99	99	Q.1	0.012506
ORF3a	100	G100V	gGc	gTc	98	98	B.1.1.291	0.072754
ORF3a	100	G100C	Ggc	Tgc	91	91	B.1.429	0.002141
ORF3a	100	G100V	gGc	gTc	91	91	B.1.617.2	0.000343
ORF3a	100	G100S	Ggc	Agc	85	85	B.1.1.7	0.000076
ORF3a	100	G100C	Ggc	Tgc	84	84	AY.5	0.001735
ORF3a	100	G100V	gGc	gTc	81	81	AY.4	0.000126
ORF3a	100	G100C	Ggc	Tgc	81	81	B.1.258.17	0.008422
ORF3a	100	G100C	Ggc	Tgc	79	79	AY.109	0.058432
ORF3a	100	G100C	Ggc	Tgc	76	76	B.1.351	0.002259
ORF3a	100	G100S	Ggc	Agc	75	75	AY.4	0.000117
ORF3a	100	G100C	Ggc	Tgc	75	75	B.1.1.222	0.0153
ORF3a	100	G100C	Ggc	Tgc	68	68	P.1	0.001071
ORF3a	100	G100V	gGc	gTc	65	65	B.1.2	0.000572
ORF3a	100	G100C	Ggc	Tgc	63	63	AY.33	0.004207
ORF3a	100	G100C	Ggc	Tgc	61	61	B.1.400	0.026169
ORF3a	100	G100G	ggC	ggT	57	57	B.1.14	1
ORF3a	100	G100C	Ggc	Tgc	54	54	B.1.1.519	0.002144
ORF3a	100	G100G	ggC	ggT	54	54	B.1.177	0.000711
ORF3a	100	G100G	ggC	ggT	54	54	B.1.637	0.003946
ORF3a	100	G100C	Ggc	Tgc	52	52	B.1.160	0.001622
ORF3a	100	G100D	gGc	gAc	51	51	B.1.389	0.051102
ORF3a	100	G100G	ggC	ggT	50	50	AY.103	0.00031
ORF3a	100	G100C	Ggc	Tgc	48	48	B.1.177.16	0.031894
ORF3a	100	G100C	Ggc	Tgc	40	40	AY.4.2.1	0.005959
ORF3a	100	G100C	Ggc	Tgc	39	39	AY.98.1	0.001889
ORF3a	100	G100C	Ggc	Tgc	37	37	AY.74	0.004279
ORF3a	100	G100G	ggC	ggT	36	36	AY.26	0.001019
ORF3a	100	G100del	GGC	---	36	36	B.1.1.7	0.000032
ORF3a	100	G100G	ggC	ggT	33	36	B.1.617.2	0.000124
ORF3a	100	G100G	ggC	ggG	3	36	B.1.617.2	0.000011
ORF3a	100	G100V	gGc	gTc	33	33	AY.43	0.000146
ORF3a	100	G100V	gGc	gTc	32	32	AY.98	0.002528
ORF3a	100	G100C	Ggc	Tgc	32	32	B.1.1.306	0.014029
ORF3a	100	G100D	gGc	gAc	31	31	B.1	0.000284
ORF3a	100	G100C	Ggc	Tgc	30	30	AY.91	0.021914
ORF3a	100	G100C	Ggc	Tgc	30	30	B.1.1.12	0.223881
ORF3a	100	G100C	Ggc	Tgc	30	30	C.36	0.027322
ORF3a	100	G100S	Ggc	Agc	29	29	AY.3	0.000288
ORF3a	100	G100S	Ggc	Agc	29	29	AY.46.6	0.002094
ORF3a	100	G100G	ggC	ggT	29	29	AY.99.2	0.002673
ORF3a	100	G100C	Ggc	Tgc	28	28	AY.34	0.002715
ORF3a	100	G100C	Ggc	Tgc	28	28	B.1.258	0.001863
ORF3a	100	G100C	Ggc	Tgc	28	28	C.37	0.00325
ORF3a	100	G100S	Ggc	Agc	27	27	AY.103	0.000168
ORF3a	100	G100S	Ggc	Agc	27	27	AY.14	0.002376
ORF3a	100	G100C	Ggc	Tgc	27	27	AY.46	0.00281
ORF3a	100	G100C	Ggc	Tgc	27	27	AY.75	0.001513
ORF3a	100	G100C	Ggc	Tgc	27	27	AY.9.2	0.000992
ORF3a	100	G100C	Ggc	Tgc	27	27	B.1.399	0.052224
ORF3a	100	G100G	ggC	ggT	27	27	B.1.527	0.1
ORF3a	100	G100A	gGc	gCc	24	26	All	0.000005
ORF3a	100	G100A	gGC	gCT	1	26	All	0
ORF3a	100	G100A	gGC	gCA	1	26	All	0
ORF3a	100	G100C	Ggc	Tgc	26	26	AY.106	0.008707
ORF3a	100	G100C	Ggc	Tgc	25	25	AE.8	0.012225
ORF3a	100	G100V	gGc	gTc	25	25	AY.25	0.00015
ORF3a	100	G100C	Ggc	Tgc	25	25	AY.29	0.000394
ORF3a	100	G100C	Ggc	Tgc	25	25	B.1.36	0.003648
ORF3a	100	G100C	Ggc	Tgc	23	23	B.1.595	0.006002
ORF3a	100	G100G	ggC	ggT	22	22	AY.25	0.000132
ORF3a	100	G100S	Ggc	Agc	22	22	AY.44	0.000134
ORF3a	100	G100G	ggC	ggT	21	22	P.1	0.000331
ORF3a	100	G100G	ggC	ggG	1	22	P.1	0.000016
ORF3a	100	G100V	gGc	gTc	21	21	AY.65	0.011194
ORF3a	100	G100G	ggC	ggT	21	21	B.1.36.18	0.008824
ORF3a	100	G100C	Ggc	Tgc	21	21	P.1.17	0.003397
ORF3a	100	G100V	gGc	gTc	19	20	AY.44	0.000116
ORF3a	100	G100V	gGC	gTA	1	20	AY.44	0.000006
ORF3a	100	G100C	Ggc	Tgc	20	20	B.1.1.226	0.116279
ORF3a	100	G100C	Ggc	Tgc	20	20	Q.3	0.002901
ORF3a	100	G100C	Ggc	Tgc	19	19	AY.100	0.000874
ORF3a	100	G100G	ggC	ggT	19	19	AY.116.1	0.005917
ORF3a	100	G100C	Ggc	Tgc	19	19	AY.119	0.000671
ORF3a	100	G100R	Ggc	Cgc	19	19	B.1.1.7	0.000017
ORF3a	100	G100C	Ggc	Tgc	19	19	B.1.232	0.01021
ORF3a	100	G100S	Ggc	Agc	19	19	B.1.617.2	0.000072
ORF3a	100	G100C	Ggc	Tgc	19	19	R.1	0.00171
ORF3a	100	G100F	GGc	TTc	17	18	All	0.000003
ORF3a	100	G100F	GGC	TTT	1	18	All	0
ORF3a	100	G100C	Ggc	Tgc	18	18	AY.117	0.001521
ORF3a	100	G100G	ggC	ggT	18	18	AY.29	0.000284
ORF3a	100	G100D	gGc	gAc	18	18	AY.4	0.000028
ORF3a	100	G100C	Ggc	Tgc	18	18	B.1.1.241	0.037267
ORF3a	100	G100S	Ggc	Agc	18	18	B.1.2	0.000158
ORF3a	100	G100S	Ggc	Agc	18	18	R.1	0.00162
ORF3a	100	G100S	Ggc	Agc	17	17	AY.43	0.000075
ORF3a	100	G100C	Ggc	Tgc	17	17	AY.5.4	0.004704
ORF3a	100	G100C	Ggc	Tgc	17	17	AY.7	0.003332
ORF3a	100	G100V	gGc	gTc	17	17	AY.9.2	0.000624
ORF3a	100	G100C	Ggc	Tgc	17	17	B.1.1.294	0.021519
ORF3a	100	G100G	ggC	ggT	16	17	B.1.351	0.000476
ORF3a	100	G100G	ggC	ggA	1	17	B.1.351	0.00003
ORF3a	100	G100C	Ggc	Tgc	17	17	B.1.351.2	0.005144
ORF3a	100	G100S	Ggc	Agc	17	17	B.1.429	0.0004
ORF3a	100	G100C	Ggc	Tgc	17	17	P.1.17.1	0.014873
ORF3a	100	G100C	Ggc	Tgc	16	16	AY.4.2	0.000347
ORF3a	100	G100C	Ggc	Tgc	16	16	B.1.509	0.013853
ORF3a	100	G100C	Ggc	Tgc	16	16	B.1.526	0.000376
ORF3a	100	G100C	Ggc	Tgc	16	16	P.1.14	0.000765
ORF3a	100	G100C	Ggc	Tgc	15	15	AY.20	0.000583
ORF3a	100	G100C	Ggc	Tgc	15	15	AY.47	0.000467
ORF3a	100	G100C	Ggc	Tgc	15	15	AY.84	0.006562
ORF3a	100	G100S	Ggc	Agc	13	15	B.1	0.000119
ORF3a	100	G100S	GGC	TCA	1	15	B.1	0.000009
ORF3a	100	G100S	GGc	TCc	1	15	B.1	0.000009
ORF3a	100	G100C	Ggc	Tgc	15	15	B.1.561	0.005955
ORF3a	100	G100C	Ggc	Tgc	14	14	AY.23	0.000976
ORF3a	100	G100C	Ggc	Tgc	14	14	AY.59	0.007415
ORF3a	100	G100S	Ggc	Agc	13	13	AY.119	0.000459
ORF3a	100	G100C	Ggc	Tgc	13	13	AY.61	0.001362
ORF3a	100	G100del	GGC	---	13	13	B.1	0.000119
ORF3a	100	G100C	Ggc	Tgc	13	13	B.1.582	0.006379
ORF3a	100	G100C	Ggc	Tgc	13	13	D.2	0.000976
ORF3a	100	G100C	Ggc	Tgc	13	13	Q.8	0.002144
ORF3a	100	G100V	gGc	gTc	12	12	AY.103	0.000075
ORF3a	100	G100C	Ggc	Tgc	12	12	AY.114	0.002773
ORF3a	100	G100V	gGc	gTc	12	12	AY.119	0.000424
ORF3a	100	G100C	Ggc	Tgc	12	12	AY.70	0.002502
ORF3a	100	G100C	Ggc	Tgc	12	12	AY.73	0.007984
ORF3a	100	G100C	Ggc	Tgc	12	12	AY.9	0.000811
ORF3a	100	G100C	Ggc	Tgc	12	12	B.1.1.189	0.018154
ORF3a	100	G100C	Ggc	Tgc	12	12	B.1.1.312	0.022945
ORF3a	100	G100C	Ggc	Tgc	12	12	B.1.362	0.01849
ORF3a	100	G100V	gGc	gTc	12	12	P.1	0.000189
ORF3a	100	G100C	Ggc	Tgc	11	11	B.1.1.16	0.611111
ORF3a	100	G100C	Ggc	Tgc	11	11	B.1.1.318	0.003319
ORF3a	100	G100C	Ggc	Tgc	11	11	B.1.210	0.023454
ORF3a	100	G100C	Ggc	Tgc	10	11	B.1.221	0.00071
ORF3a	100	G100C	GgC	TgT	1	11	B.1.221	0.000071
ORF3a	100	G100S	Ggc	Agc	11	11	B.1.351	0.000327
ORF3a	100	G100V	gGc	gTc	10	10	AY.102	0.000265
ORF3a	100	G100D	gGc	gAc	10	10	AY.25	0.00006
ORF3a	100	G100G	ggC	ggT	8	10	AY.43	0.000035
ORF3a	100	G100G	ggC	ggA	2	10	AY.43	0.000009
ORF3a	100	G100G	ggC	ggT	10	10	AY.44	0.000061
ORF3a	100	G100G	ggC	ggT	10	10	AY.45	0.001217
ORF3a	100	G100C	Ggc	Tgc	10	10	AY.6	0.000411
ORF3a	100	G100V	gGc	gTc	10	10	AY.99.2	0.000922
ORF3a	100	G100G	ggC	ggT	8	10	B.1	0.000073
ORF3a	100	G100G	ggC	ggA	2	10	B.1	0.000018
ORF3a	100	G100S	Ggc	Agc	10	10	B.1.1	0.000181
ORF3a	100	G100C	Ggc	Tgc	10	10	B.1.1.121	0.024272
ORF3a	100	G100del	GGC	---	10	10	B.1.177	0.000132
ORF3a	100	G100G	ggC	ggT	10	10	B.1.2	0.000088
ORF3a	100	G100C	Ggc	Tgc	10	10	B.1.234	0.001319
ORF3a	100	G100G	ggC	ggT	10	10	B.1.36.24	0.061728
ORF3a	100	G100C	Ggc	Tgc	10	10	B.1.427	0.000505
ORF3a	100	G100C	Ggc	Tgc	10	10	C.16	0.010604
ORF3a	100	G100V	gGc	gTc	9	9	AY.13	0.001449
ORF3a	100	G100del	GGC	---	9	9	AY.43	0.00004
ORF3a	100	G100V	gGc	gTc	9	9	AY.5	0.000186
ORF3a	100	G100C	Ggc	Tgc	9	9	AY.75.1	0.001623
ORF3a	100	G100G	ggC	ggT	5	9	B.1.1	0.000091
ORF3a	100	G100G	ggC	ggA	3	9	B.1.1	0.000054
ORF3a	100	G100G	ggC	ggG	1	9	B.1.1	0.000018
ORF3a	100	G100G	ggC	ggT	9	9	B.1.177.86	0.001651
ORF3a	100	G100C	Ggc	Tgc	9	9	B.1.243	0.000626
ORF3a	100	G100del	GGC	---	9	9	B.1.351	0.000268
ORF3a	100	G100C	Ggc	Tgc	9	9	B.1.36.29	0.004656
ORF3a	100	G100C	Ggc	Tgc	9	9	B.1.428.2	0.3
ORF3a	100	G100C	Ggc	Tgc	9	9	B.1.617.1	0.001161
ORF3a	100	G100D	gGc	gAc	9	9	Q.8	0.001484
ORF3a	100	G100G	ggC	ggG	4	8		0.222222
ORF3a	100	G100G	ggC	ggA	2	8		0.111111
ORF3a	100	G100G	ggC	ggT	2	8		0.111111
ORF3a	100	G100G	ggC	ggT	8	8	AY.3	0.00008
ORF3a	100	G100C	Ggc	Tgc	8	8	AY.3.1	0.000682
ORF3a	100	G100C	Ggc	Tgc	8	8	AY.39.1	0.000317
ORF3a	100	G100G	ggC	ggT	8	8	AY.42	0.000322
ORF3a	100	G100V	gGc	gTc	8	8	B.1.1	0.000145
ORF3a	100	G100V	gGc	gTc	8	8	B.1.1.217	0.029091
ORF3a	100	G100C	Ggc	Tgc	8	8	B.1.474	0.015209
ORF3a	100	G100C	Ggc	Tgc	8	8	B.1.564	0.003407
ORF3a	100	G100D	gGc	gAc	8	8	B.1.617.2	0.00003
ORF3a	100	G100C	Ggc	Tgc	7	7	AY.113	0.000997
ORF3a	100	G100G	ggC	ggT	7	7	AY.46.2	0.004447
ORF3a	100	G100C	Ggc	Tgc	7	7	AY.46.6	0.000505
ORF3a	100	G100D	gGc	gAc	7	7	B.1.1.157	0.006393
ORF3a	100	G100C	Ggc	Tgc	7	7	B.1.1.159	0.03271
ORF3a	100	G100C	Ggc	Tgc	7	7	B.1.1.216	0.006233
ORF3a	100	G100C	Ggc	Tgc	7	7	B.1.1.232	0.012704
ORF3a	100	G100V	gGc	gTc	7	7	B.1.177	0.000092
ORF3a	100	G100S	Ggc	Agc	7	7	B.1.467	0.28
ORF3a	100	G100V	gGc	gTc	7	7	D.2	0.000525
ORF3a	100	G100del	GGC	---	7	7	P.1	0.00011
ORF3a	100	G100G	ggC	ggT	6	6	AY.100	0.000276
ORF3a	100	G100G	ggC	ggT	6	6	AY.13	0.000966
ORF3a	100	G100R	Ggc	Cgc	6	6	AY.4	0.000009
ORF3a	100	G100R	Ggc	Cgc	6	6	AY.43	0.000027
ORF3a	100	G100D	gGc	gAc	6	6	AY.44	0.000037
ORF3a	100	G100R	Ggc	Cgc	6	6	AY.54	0.000572
ORF3a	100	G100C	Ggc	Tgc	6	6	AY.56	0.009631
ORF3a	100	G100C	Ggc	Tgc	6	6	AY.77	0.006764
ORF3a	100	G100V	gGc	gTc	6	6	B.1	0.000055
ORF3a	100	G100D	gGc	gAc	6	6	B.1.1	0.000109
ORF3a	100	G100C	Ggc	Tgc	6	6	B.1.1.317	0.00247
ORF3a	100	G100C	Ggc	Tgc	6	6	B.1.1.369	0.002677
ORF3a	100	G100C	Ggc	Tgc	6	6	B.1.1.50	0.004073
ORF3a	100	G100G	ggC	ggT	5	6	B.1.160	0.000156
ORF3a	100	G100G	ggC	ggA	1	6	B.1.160	0.000031
ORF3a	100	G100D	gGc	gAc	6	6	B.1.2	0.000053
ORF3a	100	G100A	gGc	gCc	6	6	B.1.2	0.000053
ORF3a	100	G100S	Ggc	Agc	6	6	B.1.240	0.001293
ORF3a	100	G100V	gGc	gTc	6	6	B.1.351	0.000178
ORF3a	100	G100G	ggC	ggT	6	6	B.1.526	0.000141
ORF3a	100	G100G	ggC	ggT	6	6	B.1.617.1	0.000774
ORF3a	100	G100C	Ggc	Tgc	6	6	B.1.621	0.000531
ORF3a	100	G100R	Ggc	Cgc	6	6	B.1.625	0.014118
ORF3a	100	G100N	GGc	AAc	5	5	All	0.000001
ORF3a	100	G100K	GGC	AAA	3	5	All	0.000001
ORF3a	100	G100K	GGC	AAG	2	5	All	0
ORF3a	100	G100G	ggC	ggT	4	5	AY.102	0.000106
ORF3a	100	G100G	ggC	ggG	1	5	AY.102	0.000027
ORF3a	100	G100G	ggC	ggT	5	5	AY.113	0.000712
ORF3a	100	G100A	gGc	gCc	5	5	AY.116	0.001434
ORF3a	100	G100G	ggC	ggT	4	5	AY.118	0.000251
ORF3a	100	G100G	ggC	ggA	1	5	AY.118	0.000063
ORF3a	100	G100V	gGc	gTc	5	5	AY.120	0.000186
ORF3a	100	G100V	gGc	gTc	5	5	AY.24	0.002155
ORF3a	100	G100D	gGc	gAc	5	5	AY.26	0.000142
ORF3a	100	G100V	gGc	gTc	5	5	AY.3	0.00005
ORF3a	100	G100C	Ggc	Tgc	5	5	AY.34.1	0.00255
ORF3a	100	G100G	ggC	ggT	3	5	AY.39	0.000074
ORF3a	100	G100G	ggC	ggG	2	5	AY.39	0.000049
ORF3a	100	G100V	gGc	gTc	5	5	AY.4.2	0.000108
ORF3a	100	G100G	ggC	ggT	5	5	AY.4.2	0.000108
ORF3a	100	G100V	gGc	gTc	5	5	AY.4.5	0.000537
ORF3a	100	G100C	Ggc	Tgc	5	5	AY.71	0.002375
ORF3a	100	G100C	Ggc	Tgc	5	5	AY.95	0.003805
ORF3a	100	G100C	Ggc	Tgc	5	5	B.1.1.153	0.005476
ORF3a	100	G100C	Ggc	Tgc	5	5	B.1.1.33	0.002104
ORF3a	100	G100G	ggC	ggT	5	5	B.1.1.397	0.011261
ORF3a	100	G100C	Ggc	Tgc	5	5	B.1.1.486	0.007886
ORF3a	100	G100S	Ggc	Agc	5	5	B.1.1.519	0.000199
ORF3a	100	G100S	Ggc	Agc	5	5	B.1.160	0.000156
ORF3a	100	G100S	Ggc	Agc	5	5	B.1.177	0.000066
ORF3a	100	G100G	ggC	ggT	5	5	B.1.221	0.000355
ORF3a	100	G100S	Ggc	Agc	5	5	B.1.258	0.000333
ORF3a	100	G100D	gGc	gAc	5	5	B.1.36.8	0.005
ORF3a	100	G100C	Ggc	Tgc	5	5	B.1.403	0.01634
ORF3a	100	G100C	Ggc	Tgc	5	5	B.1.411	0.018519
ORF3a	100	G100G	ggC	ggT	5	5	B.1.429	0.000118
ORF3a	100	G100D	gGc	gAc	5	5	B.1.429	0.000118
ORF3a	100	G100del	GGC	---	5	5	B.1.525	0.000566
ORF3a	100	G100R	Ggc	Cgc	2	5	B.1.91	0.004149
ORF3a	100	G100R	GgC	CgA	2	5	B.1.91	0.004149
ORF3a	100	G100R	GgC	AgA	1	5	B.1.91	0.002075
ORF3a	100	G100R	GgC	AgG	2	4		0.111111
ORF3a	100	G100R	Ggc	Cgc	1	4		0.055556
ORF3a	100	G100R	GgC	CgT	1	4		0.055556
ORF3a	100	G100X	GgC	TgA	3	4	All	0.000001
ORF3a	100	G100X	GGC	TAA	1	4	All	0
ORF3a	100	G100S	Ggc	Agc	4	4	AY.102	0.000106
ORF3a	100	G100C	Ggc	Tgc	4	4	AY.16.1	0.00188
ORF3a	100	G100C	Ggc	Tgc	4	4	AY.19	0.004561
ORF3a	100	G100C	Ggc	Tgc	4	4	AY.24	0.001724
ORF3a	100	G100S	Ggc	Agc	4	4	AY.26	0.000113
ORF3a	100	G100D	gGc	gAc	4	4	AY.3	0.00004
ORF3a	100	G100S	Ggc	Agc	4	4	AY.32	0.00213
ORF3a	100	G100V	gGc	gTc	4	4	AY.39	0.000099
ORF3a	100	G100S	Ggc	Agc	4	4	AY.39	0.000099
ORF3a	100	G100S	Ggc	Agc	4	4	AY.5	0.000083
ORF3a	100	G100C	Ggc	Tgc	4	4	AY.54	0.000381
ORF3a	100	G100V	gGc	gTc	4	4	AY.61	0.000419
ORF3a	100	G100C	Ggc	Tgc	4	4	AY.68	0.001095
ORF3a	100	G100C	Ggc	Tgc	4	4	AY.7.1	0.000451
ORF3a	100	G100C	Ggc	Tgc	4	4	AY.98	0.000316
ORF3a	100	G100C	Ggc	Tgc	4	4	AY.99	0.004197
ORF3a	100	G100V	gGc	gTc	4	4	B.1.1.214	0.000222
ORF3a	100	G100D	gGc	gAc	4	4	B.1.1.277	0.003035
ORF3a	100	G100C	Ggc	Tgc	4	4	B.1.1.39	0.002039
ORF3a	100	G100V	gGc	gTc	4	4	B.1.177.86	0.000734
ORF3a	100	G100R	Ggc	Cgc	4	4	B.1.177.87	0.002911
ORF3a	100	G100V	gGc	gTc	4	4	B.1.241	0.003247
ORF3a	100	G100R	Ggc	Cgc	4	4	B.1.313	0.026316
ORF3a	100	G100V	gGc	gTc	4	4	B.1.36	0.000584
ORF3a	100	G100C	Ggc	Tgc	4	4	B.1.36.17	0.001976
ORF3a	100	G100C	Ggc	Tgc	4	4	B.1.525	0.000453
ORF3a	100	G100S	Ggc	Agc	4	4	B.1.526	0.000094
ORF3a	100	G100V	gGc	gTc	4	4	B.1.570	0.011765
ORF3a	100	G100C	Ggc	Tgc	4	4	B.1.591	0.042553
ORF3a	100	G100del	GGC	---	4	4	P.1.15	0.000929
ORF3a	100	G100C	Ggc	Tgc	4	4	P.1.7	0.001277
ORF3a	100	G100C	Ggc	Tgc	4	4	P.2	0.000747
ORF3a	100	G100C	Ggc	Tgc	2	3		0.111111
ORF3a	100	G100C	GgC	TgT	1	3		0.055556
ORF3a	100	G100E	gGC	gAG	2	3	All	0
ORF3a	100	G100del1	Ggc	-gc	2	3	All	0
ORF3a	100	G100del1	ggC	gg-	1	3	All	0
ORF3a	100	G100E	gGC	gAA	1	3	All	0
ORF3a	100	G100S	Ggc	Agc	3	3	AY.100	0.000138
ORF3a	100	G100D	gGc	gAc	3	3	AY.102	0.00008
ORF3a	100	G100V	gGc	gTc	3	3	AY.105	0.001929
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.108	0.003308
ORF3a	100	G100V	gGc	gTc	3	3	AY.118	0.000188
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.121	0.000406
ORF3a	100	G100G	ggC	ggT	3	3	AY.121	0.000406
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.13	0.000483
ORF3a	100	G100S	Ggc	Agc	3	3	AY.20	0.000117
ORF3a	100	G100del	GGC	---	3	3	AY.23	0.000209
ORF3a	100	G100del	GGC	---	3	3	AY.25	0.000018
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.27	0.000194
ORF3a	100	G100V	gGc	gTc	3	3	AY.33	0.0002
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.36	0.000445
ORF3a	100	G100F	GGc	TTc	3	3	AY.4	0.000005
ORF3a	100	G100G	ggC	ggT	3	3	AY.4.4	0.001227
ORF3a	100	G100del	GGC	---	3	3	AY.4.5	0.000322
ORF3a	100	G100D	gGc	gAc	2	3	AY.43	0.000009
ORF3a	100	G100D	gGC	gAT	1	3	AY.43	0.000004
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.45	0.000365
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.46.4	0.000494
ORF3a	100	G100S	Ggc	Agc	3	3	AY.47	0.000093
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.48	0.001395
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.49	0.009585
ORF3a	100	G100C	Ggc	Tgc	3	3	AY.53	0.000863
ORF3a	100	G100V	gGc	gTc	3	3	AY.60	0.002814
ORF3a	100	G100V	gGc	gTc	3	3	AY.67	0.001393
ORF3a	100	G100G	ggC	ggT	3	3	AY.9.1	0.000251
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.1.214	0.000166
ORF3a	100	G100S	Ggc	Agc	3	3	B.1.1.253	0.007519
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.1.286	0.008696
ORF3a	100	G100G	ggC	ggT	3	3	B.1.1.306	0.001315
ORF3a	100	G100S	Ggc	Agc	3	3	B.1.1.33	0.001263
ORF3a	100	G100G	ggC	ggT	2	3	B.1.1.519	0.000079
ORF3a	100	G100G	ggC	ggG	1	3	B.1.1.519	0.00004
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.108	0.017442
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.128	0.001906
ORF3a	100	G100D	gGc	gAc	3	3	B.1.160	0.000094
ORF3a	100	G100R	Ggc	Cgc	3	3	B.1.2	0.000026
ORF3a	100	G100S	Ggc	Agc	3	3	B.1.234	0.000396
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.241	0.002435
ORF3a	100	G100G	ggC	ggT	3	3	B.1.36	0.000438
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.369	0.000856
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.390	0.031915
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.396	0.002117
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.416	0.003807
ORF3a	100	G100S	Ggc	Agc	3	3	B.1.427	0.000151
ORF3a	100	G100D	gGc	gAc	3	3	B.1.427	0.000151
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.441	0.028846
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.538	0.024194
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.558	0.013699
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.575	0.00091
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.609	0.001438
ORF3a	100	G100del	GGC	---	3	3	B.1.617.2	0.000011
ORF3a	100	G100F	GGc	TTc	3	3	B.1.617.2	0.000011
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.620	0.002838
ORF3a	100	G100del	GGC	---	3	3	B.1.621	0.000266
ORF3a	100	G100C	Ggc	Tgc	3	3	B.1.621.1	0.001517
ORF3a	100	G100G	ggC	ggT	3	3	B.55	0.00885
ORF3a	100	G100F	GGc	TTc	3	3	C.36	0.002732
ORF3a	100	G100S	Ggc	Agc	3	3	P.1	0.000047
ORF3a	100	G100C	Ggc	Tgc	3	3	P.1.1	0.000953
ORF3a	100	G100S	Ggc	Agc	2	2		0.111111
ORF3a	100	G100N	GGc	AAc	2	2		0.111111
ORF3a	100	G100D	gGc	gAc	2	2		0.111111
ORF3a	100	G100K	GGC	AAG	2	2		0.111111
ORF3a	100	G100E	gGC	gAG	2	2		0.111111
ORF3a	100	G100V	gGC	gTT	1	2		0.055556
ORF3a	100	G100L	GGC	CTT	1	2		0.055556
ORF3a	100	G100L	GGc	CTc	1	2		0.055556
ORF3a	100	G100F	GGC	TTT	1	2		0.055556
ORF3a	100	G100V	gGc	gTc	1	2		0.055556
ORF3a	100	G100F	GGc	TTc	1	2		0.055556
ORF3a	100	G100I	GGc	ATc	2	2	All	0
ORF3a	100	G100L	GGC	CTT	1	2	All	0
ORF3a	100	G100L	GGc	CTc	1	2	All	0
ORF3a	100	G100V	gGc	gTc	2	2	AY.100	0.000092
ORF3a	100	G100del	GGC	---	2	2	AY.100	0.000092
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.101	0.000981
ORF3a	100	G100D	gGc	gAc	2	2	AY.103	0.000012
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.116	0.000574
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.12	0.000632
ORF3a	100	G100S	Ggc	Agc	2	2	AY.120	0.000074
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.120.2	0.002571
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.120.2.1	0.000997
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.14	0.000176
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.16	0.000759
ORF3a	100	G100G	ggC	ggT	2	2	AY.2	0.000712
ORF3a	100	G100G	ggC	ggT	2	2	AY.20	0.000078
ORF3a	100	G100V	gGc	gTc	2	2	AY.23	0.000139
ORF3a	100	G100R	Ggc	Cgc	2	2	AY.25	0.000012
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.29.1	0.000441
ORF3a	100	G100V	gGc	gTc	2	2	AY.30	0.000791
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.32	0.001065
ORF3a	100	G100D	gGc	gAc	2	2	AY.33	0.000134
ORF3a	100	G100S	Ggc	Agc	2	2	AY.36	0.000296
ORF3a	100	G100del	GGC	---	2	2	AY.4	0.000003
ORF3a	100	G100G	ggC	ggT	2	2	AY.4.1	0.001475
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.4.3	0.001684
ORF3a	100	G100S	Ggc	Agc	2	2	AY.4.4	0.000818
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.4.4	0.000818
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.4.5	0.000215
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.40	0.001929
ORF3a	100	G100S	Ggc	Agc	2	2	AY.42	0.00008
ORF3a	100	G100S	Ggc	Agc	2	2	AY.46	0.000208
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.46.2	0.001271
ORF3a	100	G100S	Ggc	Agc	2	2	AY.46.4	0.000329
ORF3a	100	G100G	ggC	ggT	2	2	AY.47	0.000062
ORF3a	100	G100V	gGc	gTc	2	2	AY.5.3	0.000675
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.52	0.001629
ORF3a	100	G100S	Ggc	Agc	2	2	AY.53	0.000575
ORF3a	100	G100S	Ggc	Agc	2	2	AY.54	0.000191
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.58	0.001815
ORF3a	100	G100G	ggC	ggT	2	2	AY.61	0.00021
ORF3a	100	G100V	gGc	gTc	2	2	AY.62	0.000871
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.63	0.000774
ORF3a	100	G100I	GGc	ATc	2	2	AY.64	0.00119
ORF3a	100	G100V	gGc	gTc	2	2	AY.73	0.001331
ORF3a	100	G100V	gGc	gTc	2	2	AY.75	0.000112
ORF3a	100	G100D	gGc	gAc	2	2	AY.75	0.000112
ORF3a	100	G100V	gGc	gTc	2	2	AY.80	0.002257
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.81	0.003984
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.82	0.002714
ORF3a	100	G100S	Ggc	Agc	2	2	AY.88	0.001768
ORF3a	100	G100A	gGc	gCc	2	2	AY.9.1	0.000167
ORF3a	100	G100G	ggC	ggT	2	2	AY.9.2	0.000073
ORF3a	100	G100C	Ggc	Tgc	2	2	AY.94	0.000885
ORF3a	100	G100S	Ggc	Agc	2	2	AY.98.1	0.000097
ORF3a	100	G100V	gGc	gTc	2	2	B	0.000256
ORF3a	100	G100C	Ggc	Tgc	2	2	B	0.000256
ORF3a	100	G100R	Ggc	Cgc	2	2	B.1	0.000018
ORF3a	100	G100A	gGc	gCc	1	2	B.1	0.000009
ORF3a	100	G100A	gGC	gCA	1	2	B.1	0.000009
ORF3a	100	G100F	GGc	TTc	2	2	B.1.1	0.000036
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.1.161	0.007067
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.1.163	0.015267
ORF3a	100	G100V	gGc	gTc	2	2	B.1.1.222	0.000408
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.1.25	0.001137
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.1.256	0.027397
ORF3a	100	G100G	ggC	ggT	2	2	B.1.1.279	0.002242
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.1.28	0.000622
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.1.326	0.003521
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.1.372	0.001377
ORF3a	100	G100G	ggC	ggT	2	2	B.1.1.39	0.001019
ORF3a	100	G100A	gGc	gCc	1	2	B.1.1.519	0.00004
ORF3a	100	G100A	gGC	gCT	1	2	B.1.1.519	0.00004
ORF3a	100	G100A	gGc	gCc	2	2	B.1.1.7	0.000002
ORF3a	100	G100F	GGc	TTc	2	2	B.1.1.7	0.000002
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.127	0.004396
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.147	0.001512
ORF3a	100	G100S	Ggc	Agc	2	2	B.1.177.15	0.001262
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.177.4	0.000422
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.177.80	0.003824
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.177.82	0.000955
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.177.86	0.000367
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.179	0.007519
ORF3a	100	G100D	gGc	gAc	2	2	B.1.221	0.000142
ORF3a	100	G100R	Ggc	Cgc	2	2	B.1.234	0.000264
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.236	0.004107
ORF3a	100	G100F	GGc	TTc	2	2	B.1.243	0.000139
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.311	0.000549
ORF3a	100	G100D	gGc	gAc	2	2	B.1.36	0.000292
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.36.31	0.003503
ORF3a	100	G100V	gGc	gTc	2	2	B.1.36.31	0.003503
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.36.8	0.002
ORF3a	100	G100G	ggC	ggT	2	2	B.1.397	0.009709
ORF3a	100	G100V	gGc	gTc	2	2	B.1.429	0.000047
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.466.2	0.000782
ORF3a	100	G100S	Ggc	Agc	2	2	B.1.516	0.003914
ORF3a	100	G100A	gGc	gCc	2	2	B.1.524	0.002813
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.576	0.001813
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.596	0.000174
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.605	0.011905
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.623	0.001073
ORF3a	100	G100del1	Ggc	-gc	2	2	B.1.627	0.00404
ORF3a	100	G100C	Ggc	Tgc	2	2	B.1.637	0.000146
ORF3a	100	G100X	GGC	TAA	1	2	B.1.91	0.002075
ORF3a	100	G100X	GgC	TgA	1	2	B.1.91	0.002075
ORF3a	100	G100G	ggC	ggT	2	2	C.37	0.000232
ORF3a	100	G100V	gGc	gTc	2	2	P.1.12	0.000968
ORF3a	100	G100V	gGc	gTc	2	2	P.1.14	0.000096
ORF3a	100	G100C	Ggc	Tgc	2	2	P.6	0.006289
ORF3a	100	G100C	Ggc	Tgc	2	2	Q.2	0.001227
ORF3a	100	G100V	gGc	gTc	2	2	Q.8	0.00033
ORF3a	100	G100W	GgC	TgG	1	1		0.055556
ORF3a	100	G100del	GGC	---	1	1	A	0.000387
ORF3a	100	G100S	Ggc	Agc	1	1	A.2	0.000662
ORF3a	100	G100G	ggC	ggT	1	1	A.2	0.000662
ORF3a	100	G100C	Ggc	Tgc	1	1	A.2.2	0.001689
ORF3a	100	G100G	ggC	ggT	1	1	A.2.4	0.003367
ORF3a	100	G100C	Ggc	Tgc	1	1	A.2.5	0.000499
ORF3a	100	G100C	Ggc	Tgc	1	1	A.29	0.005319
ORF3a	100	G100C	Ggc	Tgc	1	1	A.5	0.001923
ORF3a	100	G100G	ggC	ggT	1	1	AD.2	0.000219
ORF3a	100	G100C	Ggc	Tgc	1	1	AE.4	0.043478
ORF3a	100	G100V	gGc	gTc	1	1	AE.8	0.000489
ORF3a	100	G100S	Ggc	Agc	1	1	AE.8	0.000489
ORF3a	100	G100del	GGC	---	1	1	AH.3	0.003802
ORF3a	100	G100W	GgC	TgG	1	1	All	0
ORF3a	100	G100del2	gGC	g--	1	1	All	0
ORF3a	100	G100H	GGc	CAc	1	1	All	0
ORF3a	100	G100Y	GGc	TAc	1	1	All	0
ORF3a	100	G100Q	GGC	CAA	1	1	All	0
ORF3a	100	G100del	GGC	---	1	1	AV.1	0.005051
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.1	0.000396
ORF3a	100	G100V	gGc	gTc	1	1	AY.10	0.00053
ORF3a	100	G100D	gGc	gAc	1	1	AY.100	0.000046
ORF3a	100	G100G	ggC	ggT	1	1	AY.101	0.00049
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.104	0.001984
ORF3a	100	G100G	ggC	ggT	1	1	AY.106	0.000335
ORF3a	100	G100D	gGc	gAc	1	1	AY.107	0.000466
ORF3a	100	G100G	ggC	ggT	1	1	AY.108	0.001103
ORF3a	100	G100del	GGC	---	1	1	AY.108	0.001103
ORF3a	100	G100V	gGc	gTc	1	1	AY.110	0.000113
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.110	0.000113
ORF3a	100	G100del	GGC	---	1	1	AY.111	0.000183
ORF3a	100	G100D	gGc	gAc	1	1	AY.113	0.000142
ORF3a	100	G100del	GGC	---	1	1	AY.113	0.000142
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.115	0.005208
ORF3a	100	G100G	ggC	ggT	1	1	AY.116	0.000287
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.116.1	0.000311
ORF3a	100	G100S	Ggc	Agc	1	1	AY.117	0.000085
ORF3a	100	G100G	ggC	ggT	1	1	AY.117	0.000085
ORF3a	100	G100D	gGc	gAc	1	1	AY.12	0.000316
ORF3a	100	G100G	ggC	ggT	1	1	AY.120	0.000037
ORF3a	100	G100D	gGc	gAc	1	1	AY.120	0.000037
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.120.1	0.000321
ORF3a	100	G100D	gGc	gAc	1	1	AY.14	0.000088
ORF3a	100	G100R	Ggc	Cgc	1	1	AY.16	0.00038
ORF3a	100	G100V	gGc	gTc	1	1	AY.16	0.00038
ORF3a	100	G100G	ggC	ggT	1	1	AY.16.1	0.00047
ORF3a	100	G100V	gGc	gTc	1	1	AY.2	0.000356
ORF3a	100	G100del	GGC	---	1	1	AY.20	0.000039
ORF3a	100	G100D	gGc	gAc	1	1	AY.20	0.000039
ORF3a	100	G100V	gGc	gTc	1	1	AY.20	0.000039
ORF3a	100	G100S	Ggc	Agc	1	1	AY.23	0.00007
ORF3a	100	G100G	ggC	ggT	1	1	AY.23	0.00007
ORF3a	100	G100R	Ggc	Cgc	1	1	AY.26	0.000028
ORF3a	100	G100G	ggC	ggT	1	1	AY.27	0.000065
ORF3a	100	G100S	Ggc	Agc	1	1	AY.29	0.000016
ORF3a	100	G100del	GGC	---	1	1	AY.29	0.000016
ORF3a	100	G100S	Ggc	Agc	1	1	AY.3.1	0.000085
ORF3a	100	G100V	gGc	gTc	1	1	AY.3.1	0.000085
ORF3a	100	G100D	gGc	gAc	1	1	AY.3.1	0.000085
ORF3a	100	G100S	Ggc	Agc	1	1	AY.30	0.000396
ORF3a	100	G100G	ggC	ggT	1	1	AY.32	0.000532
ORF3a	100	G100S	Ggc	Agc	1	1	AY.33	0.000067
ORF3a	100	G100del	GGC	---	1	1	AY.33	0.000067
ORF3a	100	G100G	ggC	ggT	1	1	AY.33	0.000067
ORF3a	100	G100G	ggC	ggT	1	1	AY.34	0.000097
ORF3a	100	G100del	GGC	---	1	1	AY.34.1	0.00051
ORF3a	100	G100D	gGc	gAc	1	1	AY.35	0.000233
ORF3a	100	G100del	GGC	---	1	1	AY.35	0.000233
ORF3a	100	G100del1	ggC	gg-	1	1	AY.35	0.000233
ORF3a	100	G100V	gGc	gTc	1	1	AY.37	0.000316
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.37	0.000316
ORF3a	100	G100R	Ggc	Cgc	1	1	AY.39	0.000025
ORF3a	100	G100del	GGC	---	1	1	AY.39	0.000025
ORF3a	100	G100D	gGc	gAc	1	1	AY.39	0.000025
ORF3a	100	G100G	ggC	ggT	1	1	AY.39.1	0.00004
ORF3a	100	G100V	gGc	gTc	1	1	AY.39.1	0.00004
ORF3a	100	G100N	GGc	AAc	1	1	AY.4	0.000002
ORF3a	100	G100S	Ggc	Agc	1	1	AY.4.2	0.000022
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.41	0.000294
ORF3a	100	G100V	gGc	gTc	1	1	AY.42	0.00004
ORF3a	100	G100del2	gGC	g--	1	1	AY.43	0.000004
ORF3a	100	G100F	GGc	TTc	1	1	AY.43	0.000004
ORF3a	100	G100R	Ggc	Cgc	1	1	AY.44	0.000006
ORF3a	100	G100V	gGc	gTc	1	1	AY.45	0.000122
ORF3a	100	G100D	gGc	gAc	1	1	AY.45	0.000122
ORF3a	100	G100V	gGc	gTc	1	1	AY.46	0.000104
ORF3a	100	G100V	gGc	gTc	1	1	AY.46.1	0.001027
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.46.5	0.000198
ORF3a	100	G100V	gGc	gTc	1	1	AY.47	0.000031
ORF3a	100	G100D	gGc	gAc	1	1	AY.5	0.000021
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.5.1	0.003759
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.5.3	0.000337
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.50	0.000799
ORF3a	100	G100G	ggC	ggT	1	1	AY.51	0.000909
ORF3a	100	G100G	ggC	ggT	1	1	AY.52	0.000814
ORF3a	100	G100G	ggC	ggT	1	1	AY.54	0.000095
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.55	0.000917
ORF3a	100	G100D	gGc	gAc	1	1	AY.57	0.000656
ORF3a	100	G100G	ggC	ggT	1	1	AY.59	0.00053
ORF3a	100	G100G	ggC	ggT	1	1	AY.6	0.000041
ORF3a	100	G100D	gGc	gAc	1	1	AY.61	0.000105
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.62	0.000436
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.67	0.000464
ORF3a	100	G100del	GGC	---	1	1	AY.68	0.000274
ORF3a	100	G100G	ggC	ggT	1	1	AY.7.1	0.000113
ORF3a	100	G100S	Ggc	Agc	1	1	AY.7.1	0.000113
ORF3a	100	G100S	Ggc	Agc	1	1	AY.71	0.000475
ORF3a	100	G100V	gGc	gTc	1	1	AY.74	0.000116
ORF3a	100	G100R	Ggc	Cgc	1	1	AY.75.1	0.00018
ORF3a	100	G100S	Ggc	Agc	1	1	AY.78	0.001541
ORF3a	100	G100V	gGc	gTc	1	1	AY.79	0.001211
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.85	0.000427
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.86	0.00083
ORF3a	100	G100G	ggC	ggT	1	1	AY.88	0.000884
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.89	0.004902
ORF3a	100	G100S	Ggc	Agc	1	1	AY.9.2	0.000037
ORF3a	100	G100D	gGc	gAc	1	1	AY.9.2	0.000037
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.92	0.000287
ORF3a	100	G100S	Ggc	Agc	1	1	AY.92	0.000287
ORF3a	100	G100C	Ggc	Tgc	1	1	AY.93	0.000273
ORF3a	100	G100V	gGc	gTc	1	1	AY.93	0.000273
ORF3a	100	G100R	Ggc	Cgc	1	1	AY.98.1	0.000048
ORF3a	100	G100V	gGc	gTc	1	1	AY.98.1	0.000048
ORF3a	100	G100S	Ggc	Agc	1	1	AY.99	0.001049
ORF3a	100	G100S	Ggc	Agc	1	1	AY.99.2	0.000092
ORF3a	100	G100D	gGc	gAc	1	1	AY.99.2	0.000092
ORF3a	100	G100V	gGc	gTc	1	1	AZ.2	0.000821
ORF3a	100	G100C	Ggc	Tgc	1	1	AZ.5	0.003509
ORF3a	100	G100G	ggC	ggT	1	1	B	0.000128
ORF3a	100	G100del	GGC	---	1	1	B	0.000128
ORF3a	100	G100X	GgC	TgA	1	1	B.1	0.000009
ORF3a	100	G100A	gGc	gCc	1	1	B.1.1	0.000018
ORF3a	100	G100del	GGC	---	1	1	B.1.1	0.000018
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.1	0.000327
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.129	0.009174
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.1.134	0.011364
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.135	0.004695
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.155	0.071429
ORF3a	100	G100G	ggC	ggG	1	1	B.1.1.161	0.003534
ORF3a	100	G100V	gGc	gTc	1	1	B.1.1.163	0.007634
ORF3a	100	G100D	gGc	gAc	1	1	B.1.1.164	0.005155
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.171	0.003676
ORF3a	100	G100D	gGc	gAc	1	1	B.1.1.172	0.018182
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.176	0.000439
ORF3a	100	G100V	gGc	gTc	1	1	B.1.1.189	0.001513
ORF3a	100	G100G	ggC	ggT	1	1	B.1.1.189	0.001513
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.192	0.002309
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.210	0.005714
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.219	0.005
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.1.222	0.000204
ORF3a	100	G100G	ggC	ggT	1	1	B.1.1.25	0.000569
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.265	0.003155
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.277	0.000759
ORF3a	100	G100G	ggC	ggT	1	1	B.1.1.28	0.000311
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.1.28	0.000311
ORF3a	100	G100G	ggC	ggA	1	1	B.1.1.304	0.002809
ORF3a	100	G100D	gGc	gAc	1	1	B.1.1.311	0.000358
ORF3a	100	G100del	GGC	---	1	1	B.1.1.315	0.008475
ORF3a	100	G100D	gGc	gAc	1	1	B.1.1.317	0.000412
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.322	0.008772
ORF3a	100	G100G	ggC	ggG	1	1	B.1.1.326	0.001761
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.329	0.003846
ORF3a	100	G100R	GgC	AgA	1	1	B.1.1.33	0.000421
ORF3a	100	G100G	ggC	ggA	1	1	B.1.1.33	0.000421
ORF3a	100	G100K	GGC	AAA	1	1	B.1.1.33	0.000421
ORF3a	100	G100N	GGc	AAc	1	1	B.1.1.33	0.000421
ORF3a	100	G100E	gGC	gAA	1	1	B.1.1.33	0.000421
ORF3a	100	G100D	gGc	gAc	1	1	B.1.1.33	0.000421
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.1.334	0.016393
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.337	0.003597
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.1.348	0.000796
ORF3a	100	G100V	gGc	gTc	1	1	B.1.1.361	0.045455
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.365	0.005587
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.368	0.003086
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.37	0.000193
ORF3a	100	G100G	ggC	ggT	1	1	B.1.1.376	0.005952
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.380	0.009804
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.388	0.045455
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.389	0.006061
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.1.39	0.00051
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.397	0.002252
ORF3a	100	G100del	GGC	---	1	1	B.1.1.409	0.002833
ORF3a	100	G100del	GGC	---	1	1	B.1.1.420	0.001006
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.1.425	0.045455
ORF3a	100	G100G	ggC	ggT	1	1	B.1.1.432	0.001266
ORF3a	100	G100G	ggC	ggA	1	1	B.1.1.434	0.000349
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.442	0.018519
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.485	0.016667
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.51	0.001718
ORF3a	100	G100D	gGc	gAc	1	1	B.1.1.519	0.00004
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.521	0.005348
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.523	0.001563
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.1.525	0.005464
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.1.63	0.000386
ORF3a	100	G100K	GGC	AAA	1	1	B.1.1.7	0.000001
ORF3a	100	G100V	gGc	gTc	1	1	B.1.104	0.00369
ORF3a	100	G100D	gGc	gAc	1	1	B.1.105	0.009615
ORF3a	100	G100D	gGc	gAc	1	1	B.1.111	0.001175
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.139	0.000733
ORF3a	100	G100del	GGC	---	1	1	B.1.140	0.018868
ORF3a	100	G100del	GGC	---	1	1	B.1.157	0.002985
ORF3a	100	G100del	GGC	---	1	1	B.1.160	0.000031
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.160.16	0.000929
ORF3a	100	G100del	GGC	---	1	1	B.1.160.23	0.004831
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.170	0.00431
ORF3a	100	G100D	gGc	gAc	1	1	B.1.177	0.000013
ORF3a	100	G100G	ggC	ggT	1	1	B.1.177.14	0.006098
ORF3a	100	G100A	gGc	gCc	1	1	B.1.177.20	0.001517
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.177.21	0.000076
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.177.35	0.000691
ORF3a	100	G100R	Ggc	Cgc	1	1	B.1.177.4	0.000211
ORF3a	100	G100G	ggC	ggT	1	1	B.1.177.44	0.000519
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.177.44	0.000519
ORF3a	100	G100del	GGC	---	1	1	B.1.177.51	0.004566
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.177.51	0.004566
ORF3a	100	G100G	ggC	ggT	1	1	B.1.177.56	0.000668
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.177.56	0.000668
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.177.57	0.000281
ORF3a	100	G100del	GGC	---	1	1	B.1.177.6	0.000977
ORF3a	100	G100D	gGc	gAc	1	1	B.1.177.6	0.000977
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.177.62	0.001192
ORF3a	100	G100del	GGC	---	1	1	B.1.177.62	0.001192
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.177.63	0.002703
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.177.7	0.000165
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.177.73	0.000566
ORF3a	100	G100R	Ggc	Cgc	1	1	B.1.177.73	0.000566
ORF3a	100	G100del	GGC	---	1	1	B.1.2	0.000009
ORF3a	100	G100G	ggC	ggT	1	1	B.1.206	0.000816
ORF3a	100	G100G	ggC	ggT	1	1	B.1.210	0.002132
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.212	0.016667
ORF3a	100	G100V	gGc	gTc	1	1	B.1.214	0.003663
ORF3a	100	G100V	gGc	gTc	1	1	B.1.22	0.001318
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.221	0.000071
ORF3a	100	G100R	Ggc	Cgc	1	1	B.1.221	0.000071
ORF3a	100	G100A	gGc	gCc	1	1	B.1.234	0.000132
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.239	0.001221
ORF3a	100	G100G	ggC	ggT	1	1	B.1.240	0.000216
ORF3a	100	G100D	gGc	gAc	1	1	B.1.258	0.000067
ORF3a	100	G100V	gGc	gTc	1	1	B.1.258	0.000067
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.264	0.012346
ORF3a	100	G100D	gGc	gAc	1	1	B.1.279	0.000514
ORF3a	100	G100G	ggC	ggT	1	1	B.1.298	0.002114
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.301	0.005917
ORF3a	100	G100R	Ggc	Cgc	1	1	B.1.311	0.000275
ORF3a	100	G100D	gGc	gAc	1	1	B.1.351	0.00003
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.351.3	0.000876
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.351.5	0.0006
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.36.12	0.009615
ORF3a	100	G100G	ggC	ggT	1	1	B.1.36.21	0.00216
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.36.22	0.001208
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.36.27	0.000763
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.36.29	0.000517
ORF3a	100	G100G	ggC	ggT	1	1	B.1.36.29	0.000517
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.36.36	0.000602
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.36.38	0.001642
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.36.8	0.001
ORF3a	100	G100del	GGC	---	1	1	B.1.362	0.001541
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.362.2	0.004717
ORF3a	100	G100S	GGc	TCc	1	1	B.1.362.2	0.004717
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.367	0.000792
ORF3a	100	G100D	gGc	gAc	1	1	B.1.381	0.007812
ORF3a	100	G100G	ggC	ggT	1	1	B.1.396	0.000706
ORF3a	100	G100G	ggC	ggT	1	1	B.1.416	0.001269
ORF3a	100	G100del	GGC	---	1	1	B.1.416.1	0.001563
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.428	0.00102
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.439	0.005917
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.453	0.003236
ORF3a	100	G100D	gGc	gAc	1	1	B.1.456	0.003268
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.456	0.003268
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.468	0.005714
ORF3a	100	G100V	gGc	gTc	1	1	B.1.468	0.005714
ORF3a	100	G100G	ggC	ggT	1	1	B.1.469	0.00361
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.470	0.001404
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.471	0.002732
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.497	0.000315
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.501	0.007353
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.517	0.000427
ORF3a	100	G100V	gGc	gTc	1	1	B.1.523	0.002451
ORF3a	100	G100G	ggC	ggT	1	1	B.1.525	0.000113
ORF3a	100	G100A	gGc	gCc	1	1	B.1.526	0.000024
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.527	0.003704
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.540	0.009709
ORF3a	100	G100A	gGc	gCc	1	1	B.1.544	0.006024
ORF3a	100	G100V	gGc	gTc	1	1	B.1.554	0.004405
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.556	0.007519
ORF3a	100	G100V	gGc	gTc	1	1	B.1.560	0.00463
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.567	0.003333
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.570	0.002941
ORF3a	100	G100G	ggC	ggT	1	1	B.1.575	0.000303
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.577	0.000687
ORF3a	100	G100del	GGC	---	1	1	B.1.596	0.000087
ORF3a	100	G100V	gGc	gTc	1	1	B.1.596	0.000087
ORF3a	100	G100D	gGc	gAc	1	1	B.1.596	0.000087
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.599	0.00365
ORF3a	100	G100D	gGc	gAc	1	1	B.1.609	0.000479
ORF3a	100	G100V	gGc	gTc	1	1	B.1.609	0.000479
ORF3a	100	G100del	GGC	---	1	1	B.1.617.1	0.000129
ORF3a	100	G100V	gGc	gTc	1	1	B.1.617.1	0.000129
ORF3a	100	G100R	Ggc	Cgc	1	1	B.1.617.1	0.000129
ORF3a	100	G100R	Ggc	Cgc	1	1	B.1.617.2	0.000004
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.617.3	0.002985
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.619	0.000871
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.621	0.000089
ORF3a	100	G100R	Ggc	Cgc	1	1	B.1.621	0.000089
ORF3a	100	G100del	GGC	---	1	1	B.1.638	0.052632
ORF3a	100	G100C	Ggc	Tgc	1	1	B.1.91	0.002075
ORF3a	100	G100H	GGc	CAc	1	1	B.1.91	0.002075
ORF3a	100	G100N	GGc	AAc	1	1	B.1.91	0.002075
ORF3a	100	G100G	ggC	ggA	1	1	B.1.91	0.002075
ORF3a	100	G100Y	GGc	TAc	1	1	B.1.91	0.002075
ORF3a	100	G100K	GGC	AAA	1	1	B.1.91	0.002075
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.91	0.002075
ORF3a	100	G100Q	GGC	CAA	1	1	B.1.91	0.002075
ORF3a	100	G100S	Ggc	Agc	1	1	B.1.93	0.000934
ORF3a	100	G100V	gGc	gTc	1	1	B.28	0.003279
ORF3a	100	G100X	GgC	TgA	1	1	B.31	0.003731
ORF3a	100	G100C	Ggc	Tgc	1	1	B.40	0.000364
ORF3a	100	G100V	gGc	gTc	1	1	B.6	0.00091
ORF3a	100	G100G	ggC	ggT	1	1	B.6.6	0.000889
ORF3a	100	G100G	ggC	ggT	1	1	C.26	0.007353
ORF3a	100	G100C	Ggc	Tgc	1	1	C.26	0.007353
ORF3a	100	G100G	ggC	ggT	1	1	C.30.1	0.006711
ORF3a	100	G100S	Ggc	Agc	1	1	C.36	0.000911
ORF3a	100	G100S	Ggc	Agc	1	1	C.37	0.000116
ORF3a	100	G100del	GGC	---	1	1	C.37	0.000116
ORF3a	100	G100D	gGc	gAc	1	1	C.37	0.000116
ORF3a	100	G100V	gGc	gTc	1	1	C.37	0.000116
ORF3a	100	G100C	Ggc	Tgc	1	1	L.3	0.003546
ORF3a	100	G100G	ggC	ggT	1	1	N.3	0.005814
ORF3a	100	G100D	gGc	gAc	1	1	N.5	0.001767
ORF3a	100	G100D	gGc	gAc	1	1	P.1	0.000016
ORF3a	100	G100C	Ggc	Tgc	1	1	P.1.12	0.000484
ORF3a	100	G100R	Ggc	Cgc	1	1	P.1.14	0.000048
ORF3a	100	G100V	gGc	gTc	1	1	P.2	0.000187
ORF3a	100	G100D	gGc	gAc	1	1	Q.1	0.000126
ORF3a	100	G100C	Ggc	Tgc	1	1	Q.4	0.000455
ORF3a	100	G100del	GGC	---	1	1	Q.4	0.000455
ORF3a	100	G100G	ggC	ggT	1	1	Q.6	0.006623
ORF3a	100	G100S	Ggc	Agc	1	1	Q.8	0.000165
ORF3a	100	G100del	GGC	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.