CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = T77I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp977T77IT4217InonsynaCaaTa14781478112914-12916

Details of the mutation T77I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp977T77IaCaaTa14781478All0.000283
ORF1ab/nsp977T77IaCaaTa250250B.1.1.70.000224
ORF1ab/nsp977T77IaCaaTa175175AY.430.000775
ORF1ab/nsp977T77IaCaaTa8181B.1.1600.002526
ORF1ab/nsp977T77IaCaaTa7070AY.40.000109
ORF1ab/nsp977T77IaCaaTa6868B.10.000623
ORF1ab/nsp977T77IaCaaTa6363B.1.2250.969231
ORF1ab/nsp977T77IaCaaTa6262B.1.617.20.000233
ORF1ab/nsp977T77IaCaaTa5252AY.390.001285
ORF1ab/nsp977T77IaCaaTa4242AY.30.000418
ORF1ab/nsp977T77IaCaaTa3030B.1.3960.021171
ORF1ab/nsp977T77IaCaaTa2626AY.440.000158
ORF1ab/nsp977T77IaCaaTa2525B.1.20.00022
ORF1ab/nsp977T77IaCaaTa2222AY.1020.000583
ORF1ab/nsp977T77IaCaaTa2222AY.1030.000137
ORF1ab/nsp977T77IaCaaTa2121AY.4.20.000455
ORF1ab/nsp977T77IaCaaTa2121B.1.2320.011284
ORF1ab/nsp977T77IaCaaTa2121P.10.000331
ORF1ab/nsp977T77IaCaaTa1919AY.750.001064
ORF1ab/nsp977T77IaCaaTa1818B.1.4290.000424
ORF1ab/nsp977T77IaCaaTa1717AY.1200.000632
ORF1ab/nsp977T77IaCaaTa1616B.1.5260.000376
ORF1ab/nsp977T77IaCaaTa1515B.1.1.1890.022693
ORF1ab/nsp977T77IaCaaTa1414AY.250.000084
ORF1ab/nsp977T77IaCaaTa1414AY.7.10.001578
ORF1ab/nsp977T77IaCaaTa1414B.1.258.170.001456
ORF1ab/nsp977T77IaCaaTa1313P.20.002426
ORF1ab/nsp977T77IaCaaTa1111AY.160.004176
ORF1ab/nsp977T77IaCaaTa1111AY.99.20.001014
ORF1ab/nsp977T77IaCaaTa1111B.1.177.600.002403
ORF1ab/nsp977T77IaCaaTa1010B.1.6210.000885
ORF1ab/nsp977T77IaCaaTa77AY.3.10.000597
ORF1ab/nsp977T77IaCaaTa77AY.680.001916
ORF1ab/nsp977T77IaCaaTa66AY.1210.000812
ORF1ab/nsp977T77IaCaaTa66AY.23.10.002504
ORF1ab/nsp977T77IaCaaTa66AY.260.00017
ORF1ab/nsp977T77IaCaaTa66B.1.10.000109
ORF1ab/nsp977T77IaCaaTa66B.1.2210.000426
ORF1ab/nsp977T77IaCaaTa66P.1.70.001916
ORF1ab/nsp977T77IaCaaTa55AY.140.00044
ORF1ab/nsp977T77IaCaaTa55AY.460.00052
ORF1ab/nsp977T77IaCaaTa55AY.50.000103
ORF1ab/nsp977T77IaCaaTa55B.1.1770.000066
ORF1ab/nsp977T77IaCaaTa44AY.1190.000141
ORF1ab/nsp977T77IaCaaTa44AY.4.50.00043
ORF1ab/nsp977T77IaCaaTa44AY.450.000487
ORF1ab/nsp977T77IaCaaTa44AY.75.10.000721
ORF1ab/nsp977T77IaCaaTa44AY.980.000316
ORF1ab/nsp977T77IaCaaTa44B.1.1.3480.003185
ORF1ab/nsp977T77IaCaaTa33AY.1000.000138
ORF1ab/nsp977T77IaCaaTa33AY.200.000117
ORF1ab/nsp977T77IaCaaTa33AY.290.000047
ORF1ab/nsp977T77IaCaaTa33AY.330.0002
ORF1ab/nsp977T77IaCaaTa33AY.470.000093
ORF1ab/nsp977T77IaCaaTa33AY.900.002053
ORF1ab/nsp977T77IaCaaTa33B.1.1.1520.12
ORF1ab/nsp977T77IaCaaTa33B.1.177.430.004431
ORF1ab/nsp977T77IaCaaTa33B.1.5960.000261
ORF1ab/nsp977T77IaCaaTa22AY.1100.000225
ORF1ab/nsp977T77IaCaaTa22AY.1170.000169
ORF1ab/nsp977T77IaCaaTa22AY.120.10.000642
ORF1ab/nsp977T77IaCaaTa22AY.130.000322
ORF1ab/nsp977T77IaCaaTa22AY.420.00008
ORF1ab/nsp977T77IaCaaTa22AY.5.30.000675
ORF1ab/nsp977T77IaCaaTa22AY.540.000191
ORF1ab/nsp977T77IaCaaTa22AY.9.10.000167
ORF1ab/nsp977T77IaCaaTa22AY.98.10.000097
ORF1ab/nsp977T77IaCaaTa22B.1.1.5190.000079
ORF1ab/nsp977T77IaCaaTa22B.1.177.730.001133
ORF1ab/nsp977T77IaCaaTa22B.1.2400.000431
ORF1ab/nsp977T77IaCaaTa22B.1.2430.000139
ORF1ab/nsp977T77IaCaaTa22B.1.3110.000549
ORF1ab/nsp977T77IaCaaTa22B.1.350.016949
ORF1ab/nsp977T77IaCaaTa22B.1.466.20.000782
ORF1ab/nsp977T77IaCaaTa22B.1.5640.000852
ORF1ab/nsp977T77IaCaaTa22B.1.5750.000607
ORF1ab/nsp977T77IaCaaTa22B.1.5760.001813
ORF1ab/nsp977T77IaCaaTa22B.1.5820.000981
ORF1ab/nsp977T77IaCaaTa22D.20.00015
ORF1ab/nsp977T77IaCaaTa22D.50.00995
ORF1ab/nsp977T77IaCaaTa22N.60.014184
ORF1ab/nsp977T77IaCaaTa22P.1.140.000096
ORF1ab/nsp977T77IaCaaTa22Q.10.000253
ORF1ab/nsp977T77IaCaaTa11A.10.000282
ORF1ab/nsp977T77IaCaaTa11A.2.20.001689
ORF1ab/nsp977T77IaCaaTa11A.2.50.000499
ORF1ab/nsp977T77IaCaaTa11AE.80.000489
ORF1ab/nsp977T77IaCaaTa11AY.100.00053
ORF1ab/nsp977T77IaCaaTa11AY.1110.000183
ORF1ab/nsp977T77IaCaaTa11AY.1160.000287
ORF1ab/nsp977T77IaCaaTa11AY.1180.000063
ORF1ab/nsp977T77IaCaaTa11AY.280.00189
ORF1ab/nsp977T77IaCaaTa11AY.320.000532
ORF1ab/nsp977T77IaCaaTa11AY.340.000097
ORF1ab/nsp977T77IaCaaTa11AY.34.10.00051
ORF1ab/nsp977T77IaCaaTa11AY.360.000148
ORF1ab/nsp977T77IaCaaTa11AY.39.10.00004
ORF1ab/nsp977T77IaCaaTa11AY.39.20.001541
ORF1ab/nsp977T77IaCaaTa11AY.400.000964
ORF1ab/nsp977T77IaCaaTa11AY.46.10.001027
ORF1ab/nsp977T77IaCaaTa11AY.550.000917
ORF1ab/nsp977T77IaCaaTa11AY.570.000656
ORF1ab/nsp977T77IaCaaTa11AY.60.000041
ORF1ab/nsp977T77IaCaaTa11AY.610.000105
ORF1ab/nsp977T77IaCaaTa11AY.650.000533
ORF1ab/nsp977T77IaCaaTa11AY.700.000209
ORF1ab/nsp977T77IaCaaTa11AY.780.001541
ORF1ab/nsp977T77IaCaaTa11AY.790.001211
ORF1ab/nsp977T77IaCaaTa11AY.80.000606
ORF1ab/nsp977T77IaCaaTa11B0.000128
ORF1ab/nsp977T77IaCaaTa11B.1.1.100.001115
ORF1ab/nsp977T77IaCaaTa11B.1.1.1210.002427
ORF1ab/nsp977T77IaCaaTa11B.1.1.1230.017857
ORF1ab/nsp977T77IaCaaTa11B.1.1.1610.003534
ORF1ab/nsp977T77IaCaaTa11B.1.1.2040.00304
ORF1ab/nsp977T77IaCaaTa11B.1.1.2140.000055
ORF1ab/nsp977T77IaCaaTa11B.1.1.2430.004082
ORF1ab/nsp977T77IaCaaTa11B.1.1.280.000311
ORF1ab/nsp977T77IaCaaTa11B.1.1.3120.001912
ORF1ab/nsp977T77IaCaaTa11B.1.1.3680.003086
ORF1ab/nsp977T77IaCaaTa11B.1.1.3690.000446
ORF1ab/nsp977T77IaCaaTa11B.1.1.390.00051
ORF1ab/nsp977T77IaCaaTa11B.1.1.820.038462
ORF1ab/nsp977T77IaCaaTa11B.1.1470.000756
ORF1ab/nsp977T77IaCaaTa11B.1.177.160.000664
ORF1ab/nsp977T77IaCaaTa11B.1.177.200.001517
ORF1ab/nsp977T77IaCaaTa11B.1.177.570.000281
ORF1ab/nsp977T77IaCaaTa11B.1.2120.016667
ORF1ab/nsp977T77IaCaaTa11B.1.230.006061
ORF1ab/nsp977T77IaCaaTa11B.1.2580.000067
ORF1ab/nsp977T77IaCaaTa11B.1.2640.012346
ORF1ab/nsp977T77IaCaaTa11B.1.3240.001605
ORF1ab/nsp977T77IaCaaTa11B.1.3380.008621
ORF1ab/nsp977T77IaCaaTa11B.1.351.30.000876
ORF1ab/nsp977T77IaCaaTa11B.1.3550.011111
ORF1ab/nsp977T77IaCaaTa11B.1.360.000146
ORF1ab/nsp977T77IaCaaTa11B.1.36.380.001642
ORF1ab/nsp977T77IaCaaTa11B.1.4270.00005
ORF1ab/nsp977T77IaCaaTa11B.1.4520.013699
ORF1ab/nsp977T77IaCaaTa11B.1.5170.000427
ORF1ab/nsp977T77IaCaaTa11B.1.5250.000113
ORF1ab/nsp977T77IaCaaTa11B.1.5610.000397
ORF1ab/nsp977T77IaCaaTa11B.1.5800.004065
ORF1ab/nsp977T77IaCaaTa11B.1.617.10.000129
ORF1ab/nsp977T77IaCaaTa11B.1.6250.002353
ORF1ab/nsp977T77IaCaaTa11B.1.780.008547
ORF1ab/nsp977T77IaCaaTa11B.30.000831
ORF1ab/nsp977T77IaCaaTa11B.310.003731
ORF1ab/nsp977T77IaCaaTa11C.10.002392
ORF1ab/nsp977T77IaCaaTa11C.140.004329
ORF1ab/nsp977T77IaCaaTa11C.350.000774
ORF1ab/nsp977T77IaCaaTa11P.1.150.000232
ORF1ab/nsp977T77IaCaaTa11P.1.40.000977
ORF1ab/nsp977T77IaCaaTa11Q.20.000613
ORF1ab/nsp977T77IaCaaTa11Q.30.000145
ORF1ab/nsp977T77IaCaaTa11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.