CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 24 | T24I | T4164I | nonsyn | aCt | aTt | 11347 | 11347 | 1 | 12755-12757 |
Details of the mutation T24I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 11347 | 11347 | All | 0.00217 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 5701 | 5701 | AY.119 | 0.201292 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1467 | 1467 | B.1.1.7 | 0.001313 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1334 | 1334 | AY.10 | 0.706942 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 408 | 408 | B.1.617.2 | 0.001536 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 388 | 388 | AY.4 | 0.000604 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 125 | 125 | B.1 | 0.001145 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 120 | 120 | B.1.1.519 | 0.004765 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 111 | 111 | AY.61 | 0.01163 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 103 | 103 | AY.75 | 0.00577 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 99 | 99 | B.1.36 | 0.014444 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 95 | 95 | B.1.621 | 0.008409 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 91 | 91 | AY.103 | 0.000565 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 77 | 77 | AY.44 | 0.000469 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 76 | 76 | P.1 | 0.001197 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 74 | 74 | AY.43 | 0.000328 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 63 | 63 | B.1.2 | 0.000555 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 42 | 42 | AY.39 | 0.001038 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 41 | 41 | B.1.1.118 | 0.418367 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 41 | 41 | B.1.3 | 0.10733 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 39 | 39 | B.1.1 | 0.000707 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 37 | 37 | AY.102 | 0.000981 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 32 | 32 | AY.9.2 | 0.001175 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 29 | 29 | AY.75.1 | 0.005229 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 27 | 27 | AY.26 | 0.000764 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 27 | 27 | B.1.351 | 0.000803 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 23 | 23 | AY.25 | 0.000138 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 23 | 23 | B.1.526 | 0.000541 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 22 | 22 | B.1.258 | 0.001464 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 17 | 17 | B.1.1.464 | 0.025037 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 17 | 17 | B.1.221 | 0.001208 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 16 | 16 | AY.27 | 0.001036 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 13 | 13 | B.1.1.279 | 0.014574 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 13 | 13 | B.1.177.57 | 0.003653 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 11 | 11 | AY.54 | 0.001049 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 11 | 11 | Q.4 | 0.005002 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 8 | 8 | AY.74 | 0.000925 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 8 | 8 | B.1.422 | 0.006499 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 7 | 7 | AY.71 | 0.003325 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 7 | 7 | AY.88 | 0.006189 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 7 | 7 | B.1.1.515 | 0.14 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | AY.91 | 0.004383 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | B | 0.000767 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | B.1.1.326 | 0.010563 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | B.1.36.38 | 0.009852 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 5 | 5 | AY.69 | 0.000933 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | AY.52 | 0.003257 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | B.1.411 | 0.014815 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | B.1.93 | 0.003735 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | C.23 | 0.023256 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | B.1.336 | 0.007317 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | B.3.1 | 0.004975 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.1.219 | 0.01 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.1.333 | 0.002153 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.1.404 | 0.031746 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.466.1 | 0.014388 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.43 | 0.028571 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AK.1 | 0.012658 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.324 | 0.052632 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.511 | 0.034483 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp9 | 24 | T24I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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