CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = T21T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp921T21TT4161TsynacTacC148110910.73666412746-12748
ORF1ab/nsp921T21TT4161TsynacTacA14813650.24645512746-12748
ORF1ab/nsp921T21TT4161TsynacTacG1481250.016880512746-12748

Details of the mutation T21T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp921T21TacTacC10911481All0.000209
ORF1ab/nsp921T21TacTacA3651481All0.00007
ORF1ab/nsp921T21TacTacG251481All0.000005
ORF1ab/nsp921T21TacTacC531800B.1.1.70.000475
ORF1ab/nsp921T21TacTacA258800B.1.1.70.000231
ORF1ab/nsp921T21TacTacG11800B.1.1.70.00001
ORF1ab/nsp921T21TacTacC326326AW.10.993902
ORF1ab/nsp921T21TacTacC5454B.1.177.120.008192
ORF1ab/nsp921T21TacTacA4040AY.660.042781
ORF1ab/nsp921T21TacTacC3939AY.1020.001034
ORF1ab/nsp921T21TacTacC1616B.1.5750.004854
ORF1ab/nsp921T21TacTacC1414AY.260.000396
ORF1ab/nsp921T21TacTacA1314B.1.10.000236
ORF1ab/nsp921T21TacTacC114B.1.10.000018
ORF1ab/nsp921T21TacTacA1414B.1.3510.000416
ORF1ab/nsp921T21TacTacC1113AY.440.000067
ORF1ab/nsp921T21TacTacG113AY.440.000006
ORF1ab/nsp921T21TacTacA113AY.440.000006
ORF1ab/nsp921T21TacTacC1112AY.430.000049
ORF1ab/nsp921T21TacTacG112AY.430.000004
ORF1ab/nsp921T21TacTacC812B.10.000073
ORF1ab/nsp921T21TacTacA412B.10.000037
ORF1ab/nsp921T21TacTacC811B.1.617.20.00003
ORF1ab/nsp921T21TacTacA211B.1.617.20.000008
ORF1ab/nsp921T21TacTacG111B.1.617.20.000004
ORF1ab/nsp921T21TacTacC48AY.40.000006
ORF1ab/nsp921T21TacTacA38AY.40.000005
ORF1ab/nsp921T21TacTacG18AY.40.000002
ORF1ab/nsp921T21TacTacC77B.1.36.290.003621
ORF1ab/nsp921T21TacTacA56AY.1200.000186
ORF1ab/nsp921T21TacTacC16AY.1200.000037
ORF1ab/nsp921T21TacTacC66AY.30.00006
ORF1ab/nsp921T21TacTacC56B.1.20.000044
ORF1ab/nsp921T21TacTacA16B.1.20.000009
ORF1ab/nsp921T21TacTacG56P.10.000079
ORF1ab/nsp921T21TacTacA16P.10.000016
ORF1ab/nsp921T21TacTacC44AY.950.003044
ORF1ab/nsp921T21TacTacA44B.1.1.2840.00043
ORF1ab/nsp921T21TacTacC44B.1.160.120.025641
ORF1ab/nsp921T21TacTacC33AY.290.000047
ORF1ab/nsp921T21TacTacG13AY.390.000025
ORF1ab/nsp921T21TacTacA13AY.390.000025
ORF1ab/nsp921T21TacTacC13AY.390.000025
ORF1ab/nsp921T21TacTacG33AY.4.40.001227
ORF1ab/nsp921T21TacTacA23B.1.2580.000133
ORF1ab/nsp921T21TacTacG13B.1.2580.000067
ORF1ab/nsp921T21TacTacC33B.1.4290.000071
ORF1ab/nsp921T21TacTacA23B.1.5260.000047
ORF1ab/nsp921T21TacTacC13B.1.5260.000024
ORF1ab/nsp921T21TacTacC22AY.100.00106
ORF1ab/nsp921T21TacTacC22AY.1110.000366
ORF1ab/nsp921T21TacTacC12AY.250.000006
ORF1ab/nsp921T21TacTacA12AY.250.000006
ORF1ab/nsp921T21TacTacC22AY.60.000082
ORF1ab/nsp921T21TacTacC22AY.9.20.000073
ORF1ab/nsp921T21TacTacC22B.1.1.3760.011905
ORF1ab/nsp921T21TacTacC22B.1.1600.000062
ORF1ab/nsp921T21TacTacA12B.1.1770.000013
ORF1ab/nsp921T21TacTacC12B.1.1770.000013
ORF1ab/nsp921T21TacTacC22B.1.177.440.001038
ORF1ab/nsp921T21TacTacC22B.1.360.000292
ORF1ab/nsp921T21TacTacA22B.1.6210.000177
ORF1ab/nsp921T21TacTacC22B.1.6360.013423
ORF1ab/nsp921T21TacTacA22C.370.000232
ORF1ab/nsp921T21TacTacC11AL.10.012987
ORF1ab/nsp921T21TacTacA11AY.1000.000046
ORF1ab/nsp921T21TacTacC11AY.1130.000142
ORF1ab/nsp921T21TacTacC11AY.1190.000035
ORF1ab/nsp921T21TacTacA11AY.120.10.000321
ORF1ab/nsp921T21TacTacC11AY.140.000088
ORF1ab/nsp921T21TacTacC11AY.46.40.000165
ORF1ab/nsp921T21TacTacC11AY.470.000031
ORF1ab/nsp921T21TacTacC11AY.670.000464
ORF1ab/nsp921T21TacTacA11AY.7.20.000559
ORF1ab/nsp921T21TacTacC11AY.750.000056
ORF1ab/nsp921T21TacTacA11B.1.1.3350.012987
ORF1ab/nsp921T21TacTacC11B.1.1.4640.001473
ORF1ab/nsp921T21TacTacC11B.1.1.5190.00004
ORF1ab/nsp921T21TacTacC11B.1.1.80.003584
ORF1ab/nsp921T21TacTacC11B.1.177.430.001477
ORF1ab/nsp921T21TacTacC11B.1.2100.002132
ORF1ab/nsp921T21TacTacA11B.6.60.000889
ORF1ab/nsp921T21TacTacA11P.1.140.000048
ORF1ab/nsp921T21TacTacA11Q.30.000145
ORF1ab/nsp921T21TacTacA11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.