CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = T21A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp921T21AT4161AnonsynActGct74710.95945912746-12748
ORF1ab/nsp921T21AT4161AnonsynAcTGcA7420.02702712746-12748
ORF1ab/nsp921T21AT4161AnonsynAcTGcG7410.013513512746-12748

Details of the mutation T21A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp921T21AActGct7174All0.000014
ORF1ab/nsp921T21AAcTGcA274All0
ORF1ab/nsp921T21AAcTGcG174All0
ORF1ab/nsp921T21AActGct1111AY.9.20.000404
ORF1ab/nsp921T21AActGct88AY.1030.00005
ORF1ab/nsp921T21AActGct88B.1.1.70.000007
ORF1ab/nsp921T21AActGct88P.1.160.002993
ORF1ab/nsp921T21AActGct66B.1.20.000053
ORF1ab/nsp921T21AActGct45AY.40.000006
ORF1ab/nsp921T21AAcTGcA15AY.40.000002
ORF1ab/nsp921T21AActGct33B.1.617.20.000011
ORF1ab/nsp921T21AActGct22AY.250.000012
ORF1ab/nsp921T21AActGct22AY.430.000009
ORF1ab/nsp921T21AAcTGcA12B.1.1.3350.012987
ORF1ab/nsp921T21AActGct12B.1.1.3350.012987
ORF1ab/nsp921T21AActGct22B.1.1600.000062
ORF1ab/nsp921T21AActGct22B.1.4270.000101
ORF1ab/nsp921T21AActGct11AY.1020.000027
ORF1ab/nsp921T21AActGct11AY.440.000006
ORF1ab/nsp921T21AActGct11AY.450.000122
ORF1ab/nsp921T21AActGct11AY.50.000021
ORF1ab/nsp921T21AAcTGcG11AY.850.000427
ORF1ab/nsp921T21AActGct11B.10.000009
ORF1ab/nsp921T21AActGct11B.1.10.000018
ORF1ab/nsp921T21AActGct11B.1.1.330.000421
ORF1ab/nsp921T21AActGct11B.1.1770.000013
ORF1ab/nsp921T21AActGct11B.1.2340.000132
ORF1ab/nsp921T21AActGct11B.1.2400.000216
ORF1ab/nsp921T21AActGct11B.1.258.170.000104
ORF1ab/nsp921T21AActGct11B.1.360.000146
ORF1ab/nsp921T21AActGct11B.1.3690.000285
ORF1ab/nsp921T21AActGct11P.10.000016