CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = S46del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp946S46delS4186deldelTCC---3636112821-12823

Details of the mutation S46del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp946S46delTCC---3636All0.000007
ORF1ab/nsp946S46delTCC---1212B.1.1.70.000011
ORF1ab/nsp946S46delTCC---22AY.40.000003
ORF1ab/nsp946S46delTCC---11AY.340.000097
ORF1ab/nsp946S46delTCC---11AY.430.000004
ORF1ab/nsp946S46delTCC---11AY.5.30.000337
ORF1ab/nsp946S46delTCC---11AY.720.001361
ORF1ab/nsp946S46delTCC---11AY.75.10.00018
ORF1ab/nsp946S46delTCC---11B.10.000009
ORF1ab/nsp946S46delTCC---11B.1.1.10.000327
ORF1ab/nsp946S46delTCC---11B.1.1.1390.022727
ORF1ab/nsp946S46delTCC---11B.1.1.3480.000796
ORF1ab/nsp946S46delTCC---11B.1.1.5190.00004
ORF1ab/nsp946S46delTCC---11B.1.1770.000013
ORF1ab/nsp946S46delTCC---11B.1.177.150.000631
ORF1ab/nsp946S46delTCC---11B.1.177.540.000606
ORF1ab/nsp946S46delTCC---11B.1.177.810.000189
ORF1ab/nsp946S46delTCC---11B.1.177.830.001481
ORF1ab/nsp946S46delTCC---11B.1.258.30.001675
ORF1ab/nsp946S46delTCC---11B.1.3110.000275
ORF1ab/nsp946S46delTCC---11B.1.5250.000113
ORF1ab/nsp946S46delTCC---11B.1.617.20.000004
ORF1ab/nsp946S46delTCC---11D.20.000075
ORF1ab/nsp946S46delTCC---11N.40.004255
ORF1ab/nsp946S46delTCC---11Q.80.000165