CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = R55R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp955R55RR4195RsynagAagG337130220.8964712848-12850
ORF1ab/nsp955R55RR4195RsynAgaCga33713490.1035312848-12850

Details of the mutation R55R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp955R55RagAagG30223371All0.000578
ORF1ab/nsp955R55RAgaCga3493371All0.000067
ORF1ab/nsp955R55RagAagG22862286B.1.5170.976089
ORF1ab/nsp955R55RAgaCga339440AY.40.000528
ORF1ab/nsp955R55RagAagG101440AY.40.000157
ORF1ab/nsp955R55RagAagG190190B.1.517.11
ORF1ab/nsp955R55RagAagG124125B.1.1.70.000111
ORF1ab/nsp955R55RAgaCga1125B.1.1.70.000001
ORF1ab/nsp955R55RagAagG5050AY.46.50.009921
ORF1ab/nsp955R55RagAagG4545B.10.000412
ORF1ab/nsp955R55RagAagG1419B.1.617.20.000053
ORF1ab/nsp955R55RAgaCga519B.1.617.20.000019
ORF1ab/nsp955R55RagAagG1616B.1.4290.000376
ORF1ab/nsp955R55RagAagG1112AY.430.000049
ORF1ab/nsp955R55RAgaCga112AY.430.000004
ORF1ab/nsp955R55RagAagG1212B.1.3510.000357
ORF1ab/nsp955R55RagAagG1111B.1.20.000097
ORF1ab/nsp955R55RagAagG1010AY.440.000061
ORF1ab/nsp955R55RagAagG99B.1.5260.000212
ORF1ab/nsp955R55RagAagG77AY.250.000042
ORF1ab/nsp955R55RagAagG77B.1.5770.004811
ORF1ab/nsp955R55RagAagG77P.1.150.001626
ORF1ab/nsp955R55RagAagG66AY.1030.000037
ORF1ab/nsp955R55RagAagG66B.1.4730.115385
ORF1ab/nsp955R55RagAagG66P.1.140.000287
ORF1ab/nsp955R55RagAagG66P.1.170.000971
ORF1ab/nsp955R55RagAagG55B.1.10.000091
ORF1ab/nsp955R55RagAagG44AY.4.50.00043
ORF1ab/nsp955R55RagAagG44B.1.1.5190.000159
ORF1ab/nsp955R55RagAagG33A.210.00831
ORF1ab/nsp955R55RagAagG33AY.30.00003
ORF1ab/nsp955R55RagAagG33B.1.1.3060.001315
ORF1ab/nsp955R55RagAagG33B.1.1.3180.000905
ORF1ab/nsp955R55RagAagG33B.1.1770.00004
ORF1ab/nsp955R55RagAagG33B.1.6370.000219
ORF1ab/nsp955R55RagAagG33Q.80.000495
ORF1ab/nsp955R55RagAagG22AY.420.00008
ORF1ab/nsp955R55RagAagG12AY.540.000095
ORF1ab/nsp955R55RAgaCga12AY.540.000095
ORF1ab/nsp955R55RagAagG22AY.730.001331
ORF1ab/nsp955R55RagAagG22AY.740.000231
ORF1ab/nsp955R55RagAagG22B.1.1.2690.002706
ORF1ab/nsp955R55RAgaCga22B.1.1.3980.006452
ORF1ab/nsp955R55RagAagG22B.1.1.5230.003125
ORF1ab/nsp955R55RagAagG22B.1.1600.000062
ORF1ab/nsp955R55RagAagG22B.1.2210.000142
ORF1ab/nsp955R55RagAagG22B.1.6210.000177
ORF1ab/nsp955R55RagAagG22P.10.000032
ORF1ab/nsp955R55RagAagG11A.23.10.000704
ORF1ab/nsp955R55RagAagG11AY.1000.000046
ORF1ab/nsp955R55RagAagG11AY.1020.000027
ORF1ab/nsp955R55RagAagG11AY.1200.000037
ORF1ab/nsp955R55RagAagG11AY.120.2.10.000498
ORF1ab/nsp955R55RagAagG11AY.160.00038
ORF1ab/nsp955R55RagAagG11AY.230.00007
ORF1ab/nsp955R55RagAagG11AY.260.000028
ORF1ab/nsp955R55RagAagG11AY.270.000065
ORF1ab/nsp955R55RagAagG11AY.320.000532
ORF1ab/nsp955R55RagAagG11AY.330.000067
ORF1ab/nsp955R55RagAagG11AY.46.60.000072
ORF1ab/nsp955R55RagAagG11AY.470.000031
ORF1ab/nsp955R55RagAagG11AY.50.000021
ORF1ab/nsp955R55RagAagG11AY.570.000656
ORF1ab/nsp955R55RagAagG11AY.610.000105
ORF1ab/nsp955R55RagAagG11AY.640.000595
ORF1ab/nsp955R55RagAagG11AY.680.000274
ORF1ab/nsp955R55RagAagG11AY.7.10.000113
ORF1ab/nsp955R55RagAagG11AY.750.000056
ORF1ab/nsp955R55RagAagG11AY.75.10.00018
ORF1ab/nsp955R55RagAagG11AY.9.20.000037
ORF1ab/nsp955R55RagAagG11B.1.1.2160.00089
ORF1ab/nsp955R55RagAagG11B.1.1.2980.000862
ORF1ab/nsp955R55RagAagG11B.1.1.3090.005848
ORF1ab/nsp955R55RagAagG11B.1.1.3280.016949
ORF1ab/nsp955R55RagAagG11B.1.1.330.000421
ORF1ab/nsp955R55RagAagG11B.1.177.40.000211
ORF1ab/nsp955R55RagAagG11B.1.177.730.000566
ORF1ab/nsp955R55RagAagG11B.1.2580.000067
ORF1ab/nsp955R55RagAagG11B.1.3240.001605
ORF1ab/nsp955R55RagAagG11B.1.360.000146
ORF1ab/nsp955R55RagAagG11B.1.3690.000285
ORF1ab/nsp955R55RagAagG11B.1.3750.00082
ORF1ab/nsp955R55RagAagG11B.1.3960.000706
ORF1ab/nsp955R55RagAagG11B.1.5800.004065
ORF1ab/nsp955R55RagAagG11B.1.617.10.000129
ORF1ab/nsp955R55RagAagG11B.1.6340.003425
ORF1ab/nsp955R55RagAagG11B.200.023256
ORF1ab/nsp955R55RagAagG11C.30.007634
ORF1ab/nsp955R55RagAagG11C.370.000116
ORF1ab/nsp955R55RagAagG11P.1.120.000484
ORF1ab/nsp955R55RagAagG11P.30.001595
ORF1ab/nsp955R55RagAagG11Q.10.000126
ORF1ab/nsp955R55RagAagG11Q.40.000455