CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = M101I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp9101M101IM4241InonsynatGatT26929267050.99168212986-12988
ORF1ab/nsp9101M101IM4241InonsynatGatA269291950.0072412612986-12988
ORF1ab/nsp9101M101IM4241InonsynatGatC26929290.0010769112986-12988

Details of the mutation M101I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp9101M101IatGatT2670526929All0.005108
ORF1ab/nsp9101M101IatGatA19526929All0.000037
ORF1ab/nsp9101M101IatGatC2926929All0.000006
ORF1ab/nsp9101M101IatGatT1036310363B.1.2580.689625
ORF1ab/nsp9101M101IatGatT95889588B.1.258.170.996881
ORF1ab/nsp9101M101IatGatT24372437B.1.258.110.965914
ORF1ab/nsp9101M101IatGatT523523B.1.258.71
ORF1ab/nsp9101M101IatGatT418418AY.4.10.30826
ORF1ab/nsp9101M101IatGatT373373B.1.258.220.994667
ORF1ab/nsp9101M101IatGatT284292B.10.002601
ORF1ab/nsp9101M101IatGatA7292B.10.000064
ORF1ab/nsp9101M101IatGatC1292B.10.000009
ORF1ab/nsp9101M101IatGatT289289B.1.258.40.996552
ORF1ab/nsp9101M101IatGatT232232B.1.5260.005453
ORF1ab/nsp9101M101IatGatT164222B.1.1.70.000147
ORF1ab/nsp9101M101IatGatA55222B.1.1.70.000049
ORF1ab/nsp9101M101IatGatC3222B.1.1.70.000003
ORF1ab/nsp9101M101IatGatT200204AY.250.001203
ORF1ab/nsp9101M101IatGatC4204AY.250.000024
ORF1ab/nsp9101M101IatGatT196196B.1.258.90.98
ORF1ab/nsp9101M101IatGatT139139B.1.258.190.985816
ORF1ab/nsp9101M101IatGatT113128AY.40.000176
ORF1ab/nsp9101M101IatGatA9128AY.40.000014
ORF1ab/nsp9101M101IatGatC6128AY.40.000009
ORF1ab/nsp9101M101IatGatT127127B.1.258.210.984496
ORF1ab/nsp9101M101IatGatT125125B.1.258.120.984252
ORF1ab/nsp9101M101IatGatT114114B.1.258.51
ORF1ab/nsp9101M101IatGatT8787B.1.258.100.988636
ORF1ab/nsp9101M101IatGatT6269AY.440.000377
ORF1ab/nsp9101M101IatGatA769AY.440.000043
ORF1ab/nsp9101M101IatGatT6363B.1.258.201
ORF1ab/nsp9101M101IatGatA3557B.1.20.000308
ORF1ab/nsp9101M101IatGatT2257B.1.20.000194
ORF1ab/nsp9101M101IatGatT5151B.1.258.61
ORF1ab/nsp9101M101IatGatT4949B.1.4290.001153
ORF1ab/nsp9101M101IatGatT4448B.1.10.000798
ORF1ab/nsp9101M101IatGatA248B.1.10.000036
ORF1ab/nsp9101M101IatGatC248B.1.10.000036
ORF1ab/nsp9101M101IatGatT4242B.1.258.231
ORF1ab/nsp9101M101IatGatT3740B.1.617.20.000139
ORF1ab/nsp9101M101IatGatA340B.1.617.20.000011
ORF1ab/nsp9101M101IatGatT3234B.1.1770.000421
ORF1ab/nsp9101M101IatGatC134B.1.1770.000013
ORF1ab/nsp9101M101IatGatA134B.1.1770.000013
ORF1ab/nsp9101M101IatGatT3131B.1.258.240.333333
ORF1ab/nsp9101M101IatGatT1529AY.1030.000093
ORF1ab/nsp9101M101IatGatA1429AY.1030.000087
ORF1ab/nsp9101M101IatGatT2828B.1.6090.013423
ORF1ab/nsp9101M101IatGatT2727AY.470.00084
ORF1ab/nsp9101M101IatGatT2727B.1.1600.000842
ORF1ab/nsp9101M101IatGatT2225AY.30.000219
ORF1ab/nsp9101M101IatGatC225AY.30.00002
ORF1ab/nsp9101M101IatGatA125AY.30.00001
ORF1ab/nsp9101M101IatGatT2323B.1.3510.000684
ORF1ab/nsp9101M101IatGatT1717AY.4.50.001827
ORF1ab/nsp9101M101IatGatT1515AY.430.000066
ORF1ab/nsp9101M101IatGatT1015P.10.000158
ORF1ab/nsp9101M101IatGatA515P.10.000079
ORF1ab/nsp9101M101IatGatT1314B.1.2210.000923
ORF1ab/nsp9101M101IatGatA114B.1.2210.000071
ORF1ab/nsp9101M101IatGatT1414C.160.014846
ORF1ab/nsp9101M101IatGatT1313B.1.258.140.012745
ORF1ab/nsp9101M101IatGatT1313B.1.3670.010301
ORF1ab/nsp9101M101IatGatT1212AY.340.001164
ORF1ab/nsp9101M101IatGatA1212AY.4.20.00026
ORF1ab/nsp9101M101IatGatT1111B.1.1.5190.000437
ORF1ab/nsp9101M101IatGatT1010B.1.258.181
ORF1ab/nsp9101M101IatGatT99A0.003483
ORF1ab/nsp9101M101IatGatT89AY.390.000198
ORF1ab/nsp9101M101IatGatA19AY.390.000025
ORF1ab/nsp9101M101IatGatT68AY.200.000233
ORF1ab/nsp9101M101IatGatA28AY.200.000078
ORF1ab/nsp9101M101IatGatT78B.1.1.2220.001428
ORF1ab/nsp9101M101IatGatC18B.1.1.2220.000204
ORF1ab/nsp9101M101IatGatA58B.1.6370.000365
ORF1ab/nsp9101M101IatGatT38B.1.6370.000219
ORF1ab/nsp9101M101IatGatT67AY.1020.000159
ORF1ab/nsp9101M101IatGatA17AY.1020.000027
ORF1ab/nsp9101M101IatGatT57AY.420.000201
ORF1ab/nsp9101M101IatGatA27AY.420.00008
ORF1ab/nsp9101M101IatGatT77B.4.10.132075
ORF1ab/nsp9101M101IatGatT66AY.1180.000376
ORF1ab/nsp9101M101IatGatT66B.1.177.860.001101
ORF1ab/nsp9101M101IatGatA66B.1.6250.014118
ORF1ab/nsp9101M101IatGatT55AY.1090.003698
ORF1ab/nsp9101M101IatGatT55B.1.177.730.002831
ORF1ab/nsp9101M101IatGatT55B.1.3750.004098
ORF1ab/nsp9101M101IatGatT55B.1.4110.018519
ORF1ab/nsp9101M101IatGatA44AY.130.000644
ORF1ab/nsp9101M101IatGatT44B0.000511
ORF1ab/nsp9101M101IatGatT44B.1.1.10.001307
ORF1ab/nsp9101M101IatGatT44B.1.2220.006768
ORF1ab/nsp9101M101IatGatT44B.1.5250.000453
ORF1ab/nsp9101M101IatGatT44B.1.6000.023392
ORF1ab/nsp9101M101IatGatT44B.1.6340.013699
ORF1ab/nsp9101M101IatGatT33AY.1210.000406
ORF1ab/nsp9101M101IatGatT33AY.230.000209
ORF1ab/nsp9101M101IatGatT33AY.460.000312
ORF1ab/nsp9101M101IatGatA23B.1.1.2140.000111
ORF1ab/nsp9101M101IatGatT13B.1.1.2140.000055
ORF1ab/nsp9101M101IatGatT23B.1.1.3540.008772
ORF1ab/nsp9101M101IatGatA13B.1.1.3540.004386
ORF1ab/nsp9101M101IatGatT33B.1.1.700.001023
ORF1ab/nsp9101M101IatGatT33B.1.177.60.00293
ORF1ab/nsp9101M101IatGatT33B.1.2410.002435
ORF1ab/nsp9101M101IatGatT33B.1.258.150.056604
ORF1ab/nsp9101M101IatGatT33B.1.5760.00272
ORF1ab/nsp9101M101IatGatT23B.1.617.10.000258
ORF1ab/nsp9101M101IatGatA13B.1.617.10.000129
ORF1ab/nsp9101M101IatGatT23D.20.00015
ORF1ab/nsp9101M101IatGatC13D.20.000075
ORF1ab/nsp9101M101IatGatT22AY.1050.001286
ORF1ab/nsp9101M101IatGatT22AY.1140.000462
ORF1ab/nsp9101M101IatGatT22AY.290.000032
ORF1ab/nsp9101M101IatGatT22AY.3.10.000171
ORF1ab/nsp9101M101IatGatT22AY.39.10.000079
ORF1ab/nsp9101M101IatGatA22AY.46.40.000329
ORF1ab/nsp9101M101IatGatT12AY.46.60.000072
ORF1ab/nsp9101M101IatGatA12AY.46.60.000072
ORF1ab/nsp9101M101IatGatC12AY.50.000021
ORF1ab/nsp9101M101IatGatT12AY.50.000021
ORF1ab/nsp9101M101IatGatT22AY.610.00021
ORF1ab/nsp9101M101IatGatT22AY.740.000231
ORF1ab/nsp9101M101IatGatT12AY.750.000056
ORF1ab/nsp9101M101IatGatA12AY.750.000056
ORF1ab/nsp9101M101IatGatT22AY.920.000575
ORF1ab/nsp9101M101IatGatT22AY.980.000158
ORF1ab/nsp9101M101IatGatA22AY.99.20.000184
ORF1ab/nsp9101M101IatGatT22B.1.1.1530.002191
ORF1ab/nsp9101M101IatGatA22B.1.1.2160.001781
ORF1ab/nsp9101M101IatGatT22B.1.1.390.001019
ORF1ab/nsp9101M101IatGatT22B.1.1570.00597
ORF1ab/nsp9101M101IatGatT12B.1.177.600.000218
ORF1ab/nsp9101M101IatGatA12B.1.177.600.000218
ORF1ab/nsp9101M101IatGatT22B.1.177.70.00033
ORF1ab/nsp9101M101IatGatA12B.1.177.80.000752
ORF1ab/nsp9101M101IatGatT12B.1.177.80.000752
ORF1ab/nsp9101M101IatGatA12B.1.2370.004975
ORF1ab/nsp9101M101IatGatT12B.1.2370.004975
ORF1ab/nsp9101M101IatGatT22B.1.3950.014085
ORF1ab/nsp9101M101IatGatC22B.1.5770.001375
ORF1ab/nsp9101M101IatGatT22B.1.5950.000522
ORF1ab/nsp9101M101IatGatT22B.1.5960.000174
ORF1ab/nsp9101M101IatGatA22B.1.621.10.001012
ORF1ab/nsp9101M101IatGatT22B.310.007463
ORF1ab/nsp9101M101IatGatT22C.360.001821
ORF1ab/nsp9101M101IatGatT110.055556
ORF1ab/nsp9101M101IatGatT11A.2.50.000499
ORF1ab/nsp9101M101IatGatC11AD.20.000219
ORF1ab/nsp9101M101IatGatT11AY.110.001339
ORF1ab/nsp9101M101IatGatA11AY.1170.000085
ORF1ab/nsp9101M101IatGatT11AY.1190.000035
ORF1ab/nsp9101M101IatGatT11AY.1200.000037
ORF1ab/nsp9101M101IatGatT11AY.330.000067
ORF1ab/nsp9101M101IatGatT11AY.450.000122
ORF1ab/nsp9101M101IatGatT11AY.520.000814
ORF1ab/nsp9101M101IatGatC11AY.540.000095
ORF1ab/nsp9101M101IatGatT11AY.550.000917
ORF1ab/nsp9101M101IatGatT11AY.620.000436
ORF1ab/nsp9101M101IatGatC11AY.730.000665
ORF1ab/nsp9101M101IatGatT11AY.840.000437
ORF1ab/nsp9101M101IatGatT11AY.90.000068
ORF1ab/nsp9101M101IatGatT11AY.9.20.000037
ORF1ab/nsp9101M101IatGatT11AY.98.10.000048
ORF1ab/nsp9101M101IatGatT11AZ.30.00152
ORF1ab/nsp9101M101IatGatT11B.1.1.3060.000438
ORF1ab/nsp9101M101IatGatT11B.1.1.3110.000358
ORF1ab/nsp9101M101IatGatA11B.1.1.3170.000412
ORF1ab/nsp9101M101IatGatT11B.1.1.3500.04
ORF1ab/nsp9101M101IatGatT11B.1.1.3690.000446
ORF1ab/nsp9101M101IatGatT11B.1.1.4090.002833
ORF1ab/nsp9101M101IatGatT11B.1.1.4340.000349
ORF1ab/nsp9101M101IatGatT11B.1.1.830.00271
ORF1ab/nsp9101M101IatGatT11B.1.1460.004237
ORF1ab/nsp9101M101IatGatT11B.1.160.320.004292
ORF1ab/nsp9101M101IatGatT11B.1.177.120.000152
ORF1ab/nsp9101M101IatGatT11B.1.177.210.000076
ORF1ab/nsp9101M101IatGatT11B.1.177.280.007407
ORF1ab/nsp9101M101IatGatT11B.1.177.40.000211
ORF1ab/nsp9101M101IatGatT11B.1.177.440.000519
ORF1ab/nsp9101M101IatGatT11B.1.2350.002519
ORF1ab/nsp9101M101IatGatT11B.1.2360.002053
ORF1ab/nsp9101M101IatGatT11B.1.2430.00007
ORF1ab/nsp9101M101IatGatT11B.1.258.160.001637
ORF1ab/nsp9101M101IatGatT11B.1.258.30.001675
ORF1ab/nsp9101M101IatGatT11B.1.2930.0125
ORF1ab/nsp9101M101IatGatT11B.1.3010.005917
ORF1ab/nsp9101M101IatGatT11B.1.3620.001541
ORF1ab/nsp9101M101IatGatT11B.1.3660.004878
ORF1ab/nsp9101M101IatGatC11B.1.3690.000285
ORF1ab/nsp9101M101IatGatT11B.1.4060.006061
ORF1ab/nsp9101M101IatGatT11B.1.4270.00005
ORF1ab/nsp9101M101IatGatT11B.1.4320.011236
ORF1ab/nsp9101M101IatGatT11B.1.4730.019231
ORF1ab/nsp9101M101IatGatA11B.1.4990.00105
ORF1ab/nsp9101M101IatGatT11B.1.5240.001406
ORF1ab/nsp9101M101IatGatA11B.1.5600.00463
ORF1ab/nsp9101M101IatGatT11B.1.575.10.002439
ORF1ab/nsp9101M101IatGatT11B.1.5900.004545
ORF1ab/nsp9101M101IatGatT11B.1.5990.00365
ORF1ab/nsp9101M101IatGatT11B.1.6230.000536
ORF1ab/nsp9101M101IatGatT11B.1.6270.00202
ORF1ab/nsp9101M101IatGatT11P.1.120.000484
ORF1ab/nsp9101M101IatGatA11P.1.150.000232
ORF1ab/nsp9101M101IatGatT11P.20.000187
ORF1ab/nsp9101M101IatGatC11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.