CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = L9L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp99L9LL4149LsynCtaTta248024290.97943612710-12712
ORF1ab/nsp99L9LL4149LsynctActG2480420.016935512710-12712
ORF1ab/nsp99L9LL4149LsynctActT248050.0020161312710-12712
ORF1ab/nsp99L9LL4149LsynctActC248040.001612912710-12712

Details of the mutation L9L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp99L9LCtaTta24292480All0.000465
ORF1ab/nsp99L9LctActG422480All0.000008
ORF1ab/nsp99L9LctActT52480All0.000001
ORF1ab/nsp99L9LctActC42480All0.000001
ORF1ab/nsp99L9LCtaTta11761177P.10.018527
ORF1ab/nsp99L9LctActC11177P.10.000016
ORF1ab/nsp99L9LCtaTta261261B.451
ORF1ab/nsp99L9LCtaTta236241B.1.617.20.000889
ORF1ab/nsp99L9LctActG3241B.1.617.20.000011
ORF1ab/nsp99L9LctActT2241B.1.617.20.000008
ORF1ab/nsp99L9LCtaTta153153AY.740.017694
ORF1ab/nsp99L9LCtaTta9898AY.1020.002598
ORF1ab/nsp99L9LCtaTta8689B.1.1.70.000077
ORF1ab/nsp99L9LctActG389B.1.1.70.000003
ORF1ab/nsp99L9LCtaTta6061AY.430.000266
ORF1ab/nsp99L9LctActC161AY.430.000004
ORF1ab/nsp99L9LCtaTta3939AY.670.018106
ORF1ab/nsp99L9LCtaTta2729AY.40.000042
ORF1ab/nsp99L9LctActG229AY.40.000003
ORF1ab/nsp99L9LCtaTta1920AY.260.000538
ORF1ab/nsp99L9LctActG120AY.260.000028
ORF1ab/nsp99L9LCtaTta1415B.10.000128
ORF1ab/nsp99L9LctActG115B.10.000009
ORF1ab/nsp99L9LCtaTta1414AY.5.30.004723
ORF1ab/nsp99L9LCtaTta1414P.1.120.006776
ORF1ab/nsp99L9LCtaTta1313AY.390.000321
ORF1ab/nsp99L9LCtaTta1112AY.250.000066
ORF1ab/nsp99L9LctActG112AY.250.000006
ORF1ab/nsp99L9LCtaTta1111P.1.150.002556
ORF1ab/nsp99L9LctActG610B.1.1770.000079
ORF1ab/nsp99L9LCtaTta410B.1.1770.000053
ORF1ab/nsp99L9LCtaTta99AD.2.10.409091
ORF1ab/nsp99L9LCtaTta99B.1.1.3220.078947
ORF1ab/nsp99L9LCtaTta99B.1.2430.000626
ORF1ab/nsp99L9LCtaTta88AY.1000.000368
ORF1ab/nsp99L9LCtaTta78AY.440.000043
ORF1ab/nsp99L9LctActG18AY.440.000006
ORF1ab/nsp99L9LCtaTta67AY.30.00006
ORF1ab/nsp99L9LctActC17AY.30.00001
ORF1ab/nsp99L9LCtaTta77B.1.20.000062
ORF1ab/nsp99L9LCtaTta66AY.4.20.00013
ORF1ab/nsp99L9LCtaTta66AY.460.000624
ORF1ab/nsp99L9LCtaTta56P.1.10.001588
ORF1ab/nsp99L9LctActG16P.1.10.000318
ORF1ab/nsp99L9LCtaTta55AY.1210.000677
ORF1ab/nsp99L9LCtaTta45AY.75.10.000721
ORF1ab/nsp99L9LctActG15AY.75.10.00018
ORF1ab/nsp99L9LCtaTta55B.1.10.000091
ORF1ab/nsp99L9LctActG35B.1.1600.000094
ORF1ab/nsp99L9LCtaTta25B.1.1600.000062
ORF1ab/nsp99L9LctActG55B.1.160.160.004647
ORF1ab/nsp99L9LctActG55B.1.5770.003436
ORF1ab/nsp99L9LCtaTta55P.1.160.001871
ORF1ab/nsp99L9LCtaTta440.222222
ORF1ab/nsp99L9LCtaTta44AY.1030.000025
ORF1ab/nsp99L9LCtaTta44B.1.1.5130.049383
ORF1ab/nsp99L9LCtaTta44B.1.4330.01278
ORF1ab/nsp99L9LCtaTta33AY.1060.001005
ORF1ab/nsp99L9LCtaTta33AY.200.000117
ORF1ab/nsp99L9LCtaTta33AY.230.000209
ORF1ab/nsp99L9LCtaTta33AY.420.000121
ORF1ab/nsp99L9LCtaTta33AY.450.000365
ORF1ab/nsp99L9LCtaTta33B0.000383
ORF1ab/nsp99L9LctActT33B.1.1.280.000934
ORF1ab/nsp99L9LCtaTta22AY.1170.000169
ORF1ab/nsp99L9LCtaTta22AY.1190.000071
ORF1ab/nsp99L9LCtaTta12AY.16.10.00047
ORF1ab/nsp99L9LctActG12AY.16.10.00047
ORF1ab/nsp99L9LCtaTta22AY.3.10.000171
ORF1ab/nsp99L9LctActG12AY.340.000097
ORF1ab/nsp99L9LCtaTta12AY.340.000097
ORF1ab/nsp99L9LCtaTta22AY.470.000062
ORF1ab/nsp99L9LCtaTta22AY.910.001461
ORF1ab/nsp99L9LCtaTta22AY.930.000546
ORF1ab/nsp99L9LCtaTta22AY.980.000158
ORF1ab/nsp99L9LctActG12B.1.1.2140.000055
ORF1ab/nsp99L9LCtaTta12B.1.1.2140.000055
ORF1ab/nsp99L9LctActG22B.1.1.3060.000877
ORF1ab/nsp99L9LctActG12B.1.1.5190.00004
ORF1ab/nsp99L9LCtaTta12B.1.1.5190.00004
ORF1ab/nsp99L9LCtaTta22B.1.1.530.027397
ORF1ab/nsp99L9LCtaTta22B.1.1.540.006042
ORF1ab/nsp99L9LCtaTta22B.1.1.630.000772
ORF1ab/nsp99L9LCtaTta22B.1.177.210.000153
ORF1ab/nsp99L9LCtaTta22B.1.4290.000047
ORF1ab/nsp99L9LCtaTta22P.1.100.000539
ORF1ab/nsp99L9LCtaTta22P.1.140.000096
ORF1ab/nsp99L9LctActG11A.10.000282
ORF1ab/nsp99L9LCtaTta11A.2.20.001689
ORF1ab/nsp99L9LCtaTta11AD.20.000219
ORF1ab/nsp99L9LCtaTta11AY.1010.00049
ORF1ab/nsp99L9LCtaTta11AY.1040.001984
ORF1ab/nsp99L9LCtaTta11AY.1110.000183
ORF1ab/nsp99L9LCtaTta11AY.140.000088
ORF1ab/nsp99L9LCtaTta11AY.34.10.00051
ORF1ab/nsp99L9LCtaTta11AY.46.60.000072
ORF1ab/nsp99L9LCtaTta11AY.50.000021
ORF1ab/nsp99L9LCtaTta11AY.610.000105
ORF1ab/nsp99L9LCtaTta11AY.620.000436
ORF1ab/nsp99L9LCtaTta11AY.7.10.000113
ORF1ab/nsp99L9LCtaTta11AY.870.000833
ORF1ab/nsp99L9LCtaTta11AY.9.10.000084
ORF1ab/nsp99L9LCtaTta11AY.9.20.000037
ORF1ab/nsp99L9LCtaTta11AY.920.000287
ORF1ab/nsp99L9LCtaTta11AZ.20.000821
ORF1ab/nsp99L9LCtaTta11B.1.1.1700.001247
ORF1ab/nsp99L9LctActG11B.1.1.3720.000689
ORF1ab/nsp99L9LCtaTta11B.1.1.5260.003546
ORF1ab/nsp99L9LCtaTta11B.1.1450.052632
ORF1ab/nsp99L9LCtaTta11B.1.1570.002985
ORF1ab/nsp99L9LCtaTta11B.1.177.310.011494
ORF1ab/nsp99L9LCtaTta11B.1.36.180.00042
ORF1ab/nsp99L9LCtaTta11B.1.36.80.001
ORF1ab/nsp99L9LCtaTta11B.1.3750.00082
ORF1ab/nsp99L9LCtaTta11B.1.3960.000706
ORF1ab/nsp99L9LCtaTta11B.1.438.10.000107
ORF1ab/nsp99L9LCtaTta11B.1.5260.000024
ORF1ab/nsp99L9LctActG11B.1.5960.000087
ORF1ab/nsp99L9LCtaTta11B.1.617.10.000129
ORF1ab/nsp99L9LctActC11B.1.6190.000871
ORF1ab/nsp99L9LCtaTta11B.1.6210.000089
ORF1ab/nsp99L9LCtaTta11B.1.960.018868
ORF1ab/nsp99L9LCtaTta11B.380.02381
ORF1ab/nsp99L9LCtaTta11C.370.000116
ORF1ab/nsp99L9LCtaTta11P.1.10.10.00813