CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = L42F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp942L42FL4182FnonsynCttTtt2468424684112809-12811

Details of the mutation L42F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp942L42FCttTtt2468424684All0.004721
ORF1ab/nsp942L42FCttTtt1268512685B.1.1.70.011356
ORF1ab/nsp942L42FCttTtt69546954AY.30.069167
ORF1ab/nsp942L42FCttTtt927927B.1.1.3330.997847
ORF1ab/nsp942L42FCttTtt507507B.1.10.009197
ORF1ab/nsp942L42FCttTtt463463AY.470.014402
ORF1ab/nsp942L42FCttTtt336336AY.40.000523
ORF1ab/nsp942L42FCttTtt308308AY.430.001365
ORF1ab/nsp942L42FCttTtt300300AY.250.001804
ORF1ab/nsp942L42FCttTtt266266B.1.20.002342
ORF1ab/nsp942L42FCttTtt186186B.1.617.20.0007
ORF1ab/nsp942L42FCttTtt183183AY.360.027123
ORF1ab/nsp942L42FCttTtt111111B.10.001017
ORF1ab/nsp942L42FCttTtt101101AY.440.000615
ORF1ab/nsp942L42FCttTtt9090AY.1020.002386
ORF1ab/nsp942L42FCttTtt8282B.1.1.280.025521
ORF1ab/nsp942L42FCttTtt7979B.1.1770.00104
ORF1ab/nsp942L42FCttTtt7777B.1.4130.32766
ORF1ab/nsp942L42FCttTtt7676Q.40.034561
ORF1ab/nsp942L42FCttTtt6666B.1.1.1920.152425
ORF1ab/nsp942L42FCttTtt3838AY.1170.003212
ORF1ab/nsp942L42FCttTtt3737AY.420.001489
ORF1ab/nsp942L42FCttTtt3535AY.1160.010037
ORF1ab/nsp942L42FCttTtt3434AY.1030.000211
ORF1ab/nsp942L42FCttTtt3030B.1.6210.002656
ORF1ab/nsp942L42FCttTtt3030Q.80.004947
ORF1ab/nsp942L42FCttTtt2424B.1.3490.017155
ORF1ab/nsp942L42FCttTtt2323B.1.5960.002004
ORF1ab/nsp942L42FCttTtt2222AY.390.000544
ORF1ab/nsp942L42FCttTtt1818AY.610.001886
ORF1ab/nsp942L42FCttTtt1717AY.1190.0006
ORF1ab/nsp942L42FCttTtt1717B.1.177.860.003119
ORF1ab/nsp942L42FCttTtt1717B.1.617.10.002192
ORF1ab/nsp942L42FCttTtt1616AY.730.010645
ORF1ab/nsp942L42FCttTtt1616Q.10.002021
ORF1ab/nsp942L42FCttTtt1414B.1.1600.000437
ORF1ab/nsp942L42FCttTtt1414B.1.3400.060086
ORF1ab/nsp942L42FCttTtt1313AY.920.003735
ORF1ab/nsp942L42FCttTtt1212AY.1110.002198
ORF1ab/nsp942L42FCttTtt1212AY.50.000248
ORF1ab/nsp942L42FCttTtt1212AY.98.10.000581
ORF1ab/nsp942L42FCttTtt1212B.1.177.730.006795
ORF1ab/nsp942L42FCttTtt1111AY.1000.000506
ORF1ab/nsp942L42FCttTtt1111AY.260.000311
ORF1ab/nsp942L42FCttTtt1111AY.980.000869
ORF1ab/nsp942L42FCttTtt1111B.1.3510.000327
ORF1ab/nsp942L42FCttTtt1010AY.160.003797
ORF1ab/nsp942L42FCttTtt1010AY.290.000158
ORF1ab/nsp942L42FCttTtt99B0.00115
ORF1ab/nsp942L42FCttTtt99P.10.000142
ORF1ab/nsp942L42FCttTtt88B.1.5260.000188
ORF1ab/nsp942L42FCttTtt77AY.1200.00026
ORF1ab/nsp942L42FCttTtt77AY.450.000852
ORF1ab/nsp942L42FCttTtt66AY.4.20.00013
ORF1ab/nsp942L42FCttTtt66AY.46.60.000433
ORF1ab/nsp942L42FCttTtt66B.1.4270.000303
ORF1ab/nsp942L42FCttTtt66R.10.00054
ORF1ab/nsp942L42FCttTtt55AY.200.000194
ORF1ab/nsp942L42FCttTtt55AY.230.000349
ORF1ab/nsp942L42FCttTtt55AY.3.10.000426
ORF1ab/nsp942L42FCttTtt55AY.5.30.001687
ORF1ab/nsp942L42FCttTtt55B.1.1.330.002104
ORF1ab/nsp942L42FCttTtt55B.1.1.5190.000199
ORF1ab/nsp942L42FCttTtt55B.1.2340.00066
ORF1ab/nsp942L42FCttTtt55B.1.2580.000333
ORF1ab/nsp942L42FCttTtt55B.1.3890.00501
ORF1ab/nsp942L42FCttTtt44AY.1100.000451
ORF1ab/nsp942L42FCttTtt44AY.330.000267
ORF1ab/nsp942L42FCttTtt44AY.4.2.10.000596
ORF1ab/nsp942L42FCttTtt44AY.4.50.00043
ORF1ab/nsp942L42FCttTtt44AY.460.000416
ORF1ab/nsp942L42FCttTtt44AY.46.20.002541
ORF1ab/nsp942L42FCttTtt44AY.620.001743
ORF1ab/nsp942L42FCttTtt44AY.710.0019
ORF1ab/nsp942L42FCttTtt44B.1.1.4090.011331
ORF1ab/nsp942L42FCttTtt44B.1.1.4670.076923
ORF1ab/nsp942L42FCttTtt44C.37.10.010471
ORF1ab/nsp942L42FCttTtt33AY.1140.000693
ORF1ab/nsp942L42FCttTtt33AY.1150.015625
ORF1ab/nsp942L42FCttTtt33AY.1210.000406
ORF1ab/nsp942L42FCttTtt33AY.320.001597
ORF1ab/nsp942L42FCttTtt33AY.880.002653
ORF1ab/nsp942L42FCttTtt33AY.99.20.000276
ORF1ab/nsp942L42FCttTtt33B.1.1.1410.006036
ORF1ab/nsp942L42FCttTtt33B.1.1.2940.003797
ORF1ab/nsp942L42FCttTtt33B.1.177.430.004431
ORF1ab/nsp942L42FCttTtt33B.1.177.570.000843
ORF1ab/nsp942L42FCttTtt33B.1.2210.000213
ORF1ab/nsp942L42FCttTtt33B.1.30.007853
ORF1ab/nsp942L42FCttTtt33B.1.36.10.003421
ORF1ab/nsp942L42FCttTtt33C.370.000348
ORF1ab/nsp942L42FCttTtt33D.20.000225
ORF1ab/nsp942L42FCttTtt33M.30.230769
ORF1ab/nsp942L42FCttTtt22A.2.50.000998
ORF1ab/nsp942L42FCttTtt22AY.1050.001286
ORF1ab/nsp942L42FCttTtt22AY.1060.00067
ORF1ab/nsp942L42FCttTtt22AY.1130.000285
ORF1ab/nsp942L42FCttTtt22AY.1180.000125
ORF1ab/nsp942L42FCttTtt22AY.340.000194
ORF1ab/nsp942L42FCttTtt22AY.39.10.000079
ORF1ab/nsp942L42FCttTtt22AY.5.10.007519
ORF1ab/nsp942L42FCttTtt22AY.5.40.000553
ORF1ab/nsp942L42FCttTtt22AY.60.000082
ORF1ab/nsp942L42FCttTtt22AY.750.000112
ORF1ab/nsp942L42FCttTtt22AY.75.10.000361
ORF1ab/nsp942L42FCttTtt22AY.840.000875
ORF1ab/nsp942L42FCttTtt22AY.9.20.000073
ORF1ab/nsp942L42FCttTtt22AY.910.001461
ORF1ab/nsp942L42FCttTtt22AY.950.001522
ORF1ab/nsp942L42FCttTtt22B.1.1.1340.022727
ORF1ab/nsp942L42FCttTtt22B.1.1.2070.002364
ORF1ab/nsp942L42FCttTtt22B.1.1.2140.000111
ORF1ab/nsp942L42FCttTtt22B.1.1.2220.000408
ORF1ab/nsp942L42FCttTtt22B.1.1.2620.030303
ORF1ab/nsp942L42FCttTtt22B.1.1.3180.000604
ORF1ab/nsp942L42FCttTtt22B.1.1.4340.000697
ORF1ab/nsp942L42FCttTtt22B.1.177.40.000422
ORF1ab/nsp942L42FCttTtt22B.1.177.810.000379
ORF1ab/nsp942L42FCttTtt22B.1.2430.000139
ORF1ab/nsp942L42FCttTtt22B.1.360.000292
ORF1ab/nsp942L42FCttTtt22B.1.36.160.002849
ORF1ab/nsp942L42FCttTtt22B.1.4590.008163
ORF1ab/nsp942L42FCttTtt22B.1.5350.057143
ORF1ab/nsp942L42FCttTtt22B.1.6090.000959
ORF1ab/nsp942L42FCttTtt22B.1.621.10.001012
ORF1ab/nsp942L42FCttTtt22B.30.001661
ORF1ab/nsp942L42FCttTtt22B.60.00182
ORF1ab/nsp942L42FCttTtt22C.230.011628
ORF1ab/nsp942L42FCttTtt22P.1.120.000968
ORF1ab/nsp942L42FCttTtt22P.1.70.000639
ORF1ab/nsp942L42FCttTtt11A0.000387
ORF1ab/nsp942L42FCttTtt11A.20.000662
ORF1ab/nsp942L42FCttTtt11AD.20.000219
ORF1ab/nsp942L42FCttTtt11AY.10.000396
ORF1ab/nsp942L42FCttTtt11AY.1040.001984
ORF1ab/nsp942L42FCttTtt11AY.116.10.000311
ORF1ab/nsp942L42FCttTtt11AY.120.000316
ORF1ab/nsp942L42FCttTtt11AY.120.10.000321
ORF1ab/nsp942L42FCttTtt11AY.130.000161
ORF1ab/nsp942L42FCttTtt11AY.16.10.00047
ORF1ab/nsp942L42FCttTtt11AY.190.00114
ORF1ab/nsp942L42FCttTtt11AY.220.002092
ORF1ab/nsp942L42FCttTtt11AY.270.000065
ORF1ab/nsp942L42FCttTtt11AY.34.10.00051
ORF1ab/nsp942L42FCttTtt11AY.380.000499
ORF1ab/nsp942L42FCttTtt11AY.4.10.000737
ORF1ab/nsp942L42FCttTtt11AY.4.40.000409
ORF1ab/nsp942L42FCttTtt11AY.46.50.000198
ORF1ab/nsp942L42FCttTtt11AY.510.000909
ORF1ab/nsp942L42FCttTtt11AY.540.000095
ORF1ab/nsp942L42FCttTtt11AY.550.000917
ORF1ab/nsp942L42FCttTtt11AY.560.001605
ORF1ab/nsp942L42FCttTtt11AY.580.000907
ORF1ab/nsp942L42FCttTtt11AY.600.000938
ORF1ab/nsp942L42FCttTtt11AY.670.000464
ORF1ab/nsp942L42FCttTtt11AY.680.000274
ORF1ab/nsp942L42FCttTtt11AY.720.001361
ORF1ab/nsp942L42FCttTtt11AY.800.001129
ORF1ab/nsp942L42FCttTtt11AY.870.000833
ORF1ab/nsp942L42FCttTtt11AY.90.000068
ORF1ab/nsp942L42FCttTtt11AY.9.10.000084
ORF1ab/nsp942L42FCttTtt11AY.930.000273
ORF1ab/nsp942L42FCttTtt11AY.960.002075
ORF1ab/nsp942L42FCttTtt11B.1.1.1090.04
ORF1ab/nsp942L42FCttTtt11B.1.1.1720.018182
ORF1ab/nsp942L42FCttTtt11B.1.1.250.000569
ORF1ab/nsp942L42FCttTtt11B.1.1.2690.001353
ORF1ab/nsp942L42FCttTtt11B.1.1.2770.000759
ORF1ab/nsp942L42FCttTtt11B.1.1.2910.000742
ORF1ab/nsp942L42FCttTtt11B.1.1.3040.002809
ORF1ab/nsp942L42FCttTtt11B.1.1.3060.000438
ORF1ab/nsp942L42FCttTtt11B.1.1.3160.000925
ORF1ab/nsp942L42FCttTtt11B.1.1.3170.000412
ORF1ab/nsp942L42FCttTtt11B.1.1.3880.045455
ORF1ab/nsp942L42FCttTtt11B.1.1.390.00051
ORF1ab/nsp942L42FCttTtt11B.1.1.3980.003226
ORF1ab/nsp942L42FCttTtt11B.1.1.4160.000905
ORF1ab/nsp942L42FCttTtt11B.1.1.560.017857
ORF1ab/nsp942L42FCttTtt11B.1.1.630.000386
ORF1ab/nsp942L42FCttTtt11B.1.1.890.006061
ORF1ab/nsp942L42FCttTtt11B.1.160.160.000929
ORF1ab/nsp942L42FCttTtt11B.1.177.210.000076
ORF1ab/nsp942L42FCttTtt11B.1.177.320.00135
ORF1ab/nsp942L42FCttTtt11B.1.177.420.000894
ORF1ab/nsp942L42FCttTtt11B.1.177.530.002392
ORF1ab/nsp942L42FCttTtt11B.1.177.60.000977
ORF1ab/nsp942L42FCttTtt11B.1.177.600.000218
ORF1ab/nsp942L42FCttTtt11B.1.177.70.000165
ORF1ab/nsp942L42FCttTtt11B.1.177.760.002494
ORF1ab/nsp942L42FCttTtt11B.1.2010.005682
ORF1ab/nsp942L42FCttTtt11B.1.2060.000816
ORF1ab/nsp942L42FCttTtt11B.1.2360.002053
ORF1ab/nsp942L42FCttTtt11B.1.258.170.000104
ORF1ab/nsp942L42FCttTtt11B.1.2790.000514
ORF1ab/nsp942L42FCttTtt11B.1.3240.001605
ORF1ab/nsp942L42FCttTtt11B.1.3320.003497
ORF1ab/nsp942L42FCttTtt11B.1.3410.022727
ORF1ab/nsp942L42FCttTtt11B.1.36.100.004785
ORF1ab/nsp942L42FCttTtt11B.1.36.330.007576
ORF1ab/nsp942L42FCttTtt11B.1.36.380.001642
ORF1ab/nsp942L42FCttTtt11B.1.3750.00082
ORF1ab/nsp942L42FCttTtt11B.1.4200.010417
ORF1ab/nsp942L42FCttTtt11B.1.4290.000024
ORF1ab/nsp942L42FCttTtt11B.1.4360.001029
ORF1ab/nsp942L42FCttTtt11B.1.438.10.000107
ORF1ab/nsp942L42FCttTtt11B.1.4850.014925
ORF1ab/nsp942L42FCttTtt11B.1.5240.001406
ORF1ab/nsp942L42FCttTtt11B.1.5300.007143
ORF1ab/nsp942L42FCttTtt11B.1.5600.00463
ORF1ab/nsp942L42FCttTtt11B.1.5820.000491
ORF1ab/nsp942L42FCttTtt11B.1.5880.00091
ORF1ab/nsp942L42FCttTtt11B.1.5950.000261
ORF1ab/nsp942L42FCttTtt11B.1.930.000934
ORF1ab/nsp942L42FCttTtt11B.400.000364
ORF1ab/nsp942L42FCttTtt11C.36.30.000567

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.