CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = L29L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp929L29LL4169LsynttAttG677166520.98242512770-12772
ORF1ab/nsp929L29LL4169LsynTtaCta67711150.016984212770-12772
ORF1ab/nsp929L29LL4169LsynTtACtG677140.00059075512770-12772

Details of the mutation L29L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp929L29LttAttG66526771All0.001272
ORF1ab/nsp929L29LTtaCta1156771All0.000022
ORF1ab/nsp929L29LTtACtG46771All0.000001
ORF1ab/nsp929L29LttAttG61976197AY.1130.882386
ORF1ab/nsp929L29LttAttG84102B.1.1.70.000075
ORF1ab/nsp929L29LTtaCta17102B.1.1.70.000015
ORF1ab/nsp929L29LTtACtG1102B.1.1.70.000001
ORF1ab/nsp929L29LttAttG6670B.1.617.20.000249
ORF1ab/nsp929L29LTtaCta470B.1.617.20.000015
ORF1ab/nsp929L29LttAttG5055AY.40.000078
ORF1ab/nsp929L29LTtaCta555AY.40.000008
ORF1ab/nsp929L29LttAttG3838AY.1170.003212
ORF1ab/nsp929L29LttAttG3338AY.440.000201
ORF1ab/nsp929L29LTtaCta538AY.440.00003
ORF1ab/nsp929L29LttAttG2226AY.1030.000137
ORF1ab/nsp929L29LTtaCta426AY.1030.000025
ORF1ab/nsp929L29LttAttG512B.1.1770.000066
ORF1ab/nsp929L29LTtaCta512B.1.1770.000066
ORF1ab/nsp929L29LTtACtG212B.1.1770.000026
ORF1ab/nsp929L29LttAttG1111AY.99.20.001014
ORF1ab/nsp929L29LTtaCta711B.1.20.000062
ORF1ab/nsp929L29LttAttG411B.1.20.000035
ORF1ab/nsp929L29LTtaCta611C.370.000696
ORF1ab/nsp929L29LttAttG511C.370.00058
ORF1ab/nsp929L29LTtaCta1010AY.630.003868
ORF1ab/nsp929L29LttAttG78AY.1110.001282
ORF1ab/nsp929L29LTtaCta18AY.1110.000183
ORF1ab/nsp929L29LttAttG88AY.390.000198
ORF1ab/nsp929L29LttAttG68AY.430.000027
ORF1ab/nsp929L29LTtaCta28AY.430.000009
ORF1ab/nsp929L29LTtaCta68AY.50.000124
ORF1ab/nsp929L29LttAttG28AY.50.000041
ORF1ab/nsp929L29LTtaCta77AY.1160.002007
ORF1ab/nsp929L29LTtaCta77AY.290.00011
ORF1ab/nsp929L29LttAttG47AY.30.00004
ORF1ab/nsp929L29LTtaCta37AY.30.00003
ORF1ab/nsp929L29LttAttG77AY.840.003062
ORF1ab/nsp929L29LttAttG66B.1.2390.007326
ORF1ab/nsp929L29LttAttG45AY.250.000024
ORF1ab/nsp929L29LTtaCta15AY.250.000006
ORF1ab/nsp929L29LttAttG55AY.9.20.000184
ORF1ab/nsp929L29LttAttG55AY.920.001436
ORF1ab/nsp929L29LttAttG55D.50.024876
ORF1ab/nsp929L29LttAttG44AY.320.00213
ORF1ab/nsp929L29LTtaCta44AY.340.000388
ORF1ab/nsp929L29LttAttG44B0.000511
ORF1ab/nsp929L29LttAttG34B.10.000027
ORF1ab/nsp929L29LTtaCta14B.10.000009
ORF1ab/nsp929L29LttAttG33AY.1050.001929
ORF1ab/nsp929L29LttAttG23AY.540.000191
ORF1ab/nsp929L29LTtaCta13AY.540.000095
ORF1ab/nsp929L29LTtaCta33B.1.10.000054
ORF1ab/nsp929L29LttAttG33B.1.1.5260.010638
ORF1ab/nsp929L29LttAttG13B.1.6210.000089
ORF1ab/nsp929L29LTtaCta13B.1.6210.000089
ORF1ab/nsp929L29LTtACtG13B.1.6210.000089
ORF1ab/nsp929L29LttAttG33P.20.00056
ORF1ab/nsp929L29LttAttG33Q.10.000379
ORF1ab/nsp929L29LTtaCta22AY.1020.000053
ORF1ab/nsp929L29LttAttG22AY.1180.000125
ORF1ab/nsp929L29LTtaCta22AY.270.000129
ORF1ab/nsp929L29LttAttG22AY.360.000296
ORF1ab/nsp929L29LttAttG22AY.39.10.000079
ORF1ab/nsp929L29LttAttG22AY.46.40.000329
ORF1ab/nsp929L29LttAttG22AY.580.001815
ORF1ab/nsp929L29LttAttG22AY.750.000112
ORF1ab/nsp929L29LttAttG22AY.990.002099
ORF1ab/nsp929L29LttAttG22B.1.1.10.000653
ORF1ab/nsp929L29LTtaCta22B.1.1.2160.001781
ORF1ab/nsp929L29LTtaCta22B.1.1.2220.000408
ORF1ab/nsp929L29LttAttG22B.1.1.3040.005618
ORF1ab/nsp929L29LttAttG22B.1.177.570.000562
ORF1ab/nsp929L29LttAttG22B.1.2210.000142
ORF1ab/nsp929L29LTtaCta22B.1.3510.000059
ORF1ab/nsp929L29LttAttG22P.10.000032
ORF1ab/nsp929L29LttAttG11AY.1040.001984
ORF1ab/nsp929L29LttAttG11AY.1190.000035
ORF1ab/nsp929L29LttAttG11AY.120.10.000321
ORF1ab/nsp929L29LttAttG11AY.230.00007
ORF1ab/nsp929L29LttAttG11AY.260.000028
ORF1ab/nsp929L29LttAttG11AY.380.000499
ORF1ab/nsp929L29LttAttG11AY.4.50.000107
ORF1ab/nsp929L29LttAttG11AY.410.000294
ORF1ab/nsp929L29LTtaCta11AY.450.000122
ORF1ab/nsp929L29LttAttG11AY.460.000104
ORF1ab/nsp929L29LttAttG11AY.46.20.000635
ORF1ab/nsp929L29LttAttG11AY.620.000436
ORF1ab/nsp929L29LttAttG11AY.670.000464
ORF1ab/nsp929L29LttAttG11AY.690.000187
ORF1ab/nsp929L29LttAttG11AY.930.000273
ORF1ab/nsp929L29LttAttG11AY.960.002075
ORF1ab/nsp929L29LttAttG11AY.980.000079
ORF1ab/nsp929L29LttAttG11AY.98.10.000048
ORF1ab/nsp929L29LTtaCta11B.1.1.1010.01
ORF1ab/nsp929L29LttAttG11B.1.1.2050.003717
ORF1ab/nsp929L29LTtaCta11B.1.1.2140.000055
ORF1ab/nsp929L29LttAttG11B.1.1.250.000569
ORF1ab/nsp929L29LttAttG11B.1.1.3160.000925
ORF1ab/nsp929L29LTtaCta11B.1.177.540.000606
ORF1ab/nsp929L29LttAttG11B.1.177.70.000165
ORF1ab/nsp929L29LTtaCta11B.1.2430.00007
ORF1ab/nsp929L29LttAttG11B.1.3780.006849
ORF1ab/nsp929L29LttAttG11B.1.4270.00005
ORF1ab/nsp929L29LttAttG11B.1.4290.000024
ORF1ab/nsp929L29LttAttG11B.1.5750.000303
ORF1ab/nsp929L29LttAttG11N.40.004255
ORF1ab/nsp929L29LttAttG11N.50.001767
ORF1ab/nsp929L29LttAttG11Q.80.000165