CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 112 | L112L | L4252L | syn | Cta | Tta | 230571 | 230444 | 0.999449 | 13019-13021 |
ORF1ab/nsp9 | 112 | L112L | L4252L | syn | ctA | ctG | 230571 | 94 | 0.000407684 | 13019-13021 |
ORF1ab/nsp9 | 112 | L112L | L4252L | syn | ctA | ctC | 230571 | 23 | 0.0000997524 | 13019-13021 |
ORF1ab/nsp9 | 112 | L112L | L4252L | syn | CtA | TtG | 230571 | 7 | 0.0000303594 | 13019-13021 |
ORF1ab/nsp9 | 112 | L112L | L4252L | syn | ctA | ctT | 230571 | 3 | 0.0000130112 | 13019-13021 |
Details of the mutation L112L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 230444 | 230571 | All | 0.044075 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 94 | 230571 | All | 0.000018 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctC | 23 | 230571 | All | 0.000004 |
ORF1ab/nsp9 | 112 | L112L | CtA | TtG | 7 | 230571 | All | 0.000001 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctT | 3 | 230571 | All | 0.000001 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 32537 | 32538 | AY.26 | 0.921128 |
ORF1ab/nsp9 | 112 | L112L | CtA | TtG | 1 | 32538 | AY.26 | 0.000028 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 29681 | 29682 | AY.47 | 0.923232 |
ORF1ab/nsp9 | 112 | L112L | CtA | TtG | 1 | 29682 | AY.47 | 0.000031 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 21276 | 21277 | AY.9.2 | 0.781459 |
ORF1ab/nsp9 | 112 | L112L | CtA | TtG | 1 | 21277 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 15826 | 15826 | AY.75 | 0.886611 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 15412 | 15414 | AY.27 | 0.997476 |
ORF1ab/nsp9 | 112 | L112L | CtA | TtG | 2 | 15414 | AY.27 | 0.000129 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 14431 | 14431 | AY.9 | 0.975463 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 11079 | 11079 | AY.9.1 | 0.927579 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 10801 | 10820 | B.1.617.2 | 0.04067 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctC | 15 | 10820 | B.1.617.2 | 0.000056 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 4 | 10820 | B.1.617.2 | 0.000015 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 8386 | 8386 | AY.61 | 0.878667 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 8204 | 8204 | AY.74 | 0.948768 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6503 | 6503 | B.1.427 | 0.328385 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4971 | 4971 | AY.75.1 | 0.896322 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4906 | 4907 | AY.69 | 0.915811 |
ORF1ab/nsp9 | 112 | L112L | CtA | TtG | 1 | 4907 | AY.69 | 0.000187 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4346 | 4346 | AY.70 | 0.906172 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2835 | 2835 | AY.37 | 0.896018 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2738 | 2738 | AY.2 | 0.975071 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2596 | 2596 | AY.68 | 0.710649 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2452 | 2452 | AY.63 | 0.948549 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1971 | 1971 | AY.24 | 0.849569 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1841 | 1841 | AY.62 | 0.802179 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1840 | 1840 | AY.71 | 0.874109 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1822 | 1822 | AY.67 | 0.845868 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1606 | 1660 | B.1.1.7 | 0.001438 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 54 | 1660 | B.1.1.7 | 0.000048 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1634 | 1634 | AY.10 | 0.865925 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1419 | 1419 | AY.64 | 0.844643 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1406 | 1406 | AY.59 | 0.744703 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1388 | 1388 | AY.57 | 0.910761 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1287 | 1287 | AY.38 | 0.642536 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1132 | 1133 | AY.65 | 0.603412 |
ORF1ab/nsp9 | 112 | L112L | CtA | TtG | 1 | 1133 | AY.65 | 0.000533 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 871 | 871 | AY.60 | 0.817073 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 813 | 813 | AY.66 | 0.869519 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 776 | 776 | AY.73 | 0.516301 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 739 | 739 | AY.58 | 0.670599 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 684 | 684 | AY.11 | 0.915663 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 659 | 659 | AY.72 | 0.896599 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 551 | 552 | AY.44 | 0.003354 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 1 | 552 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 506 | 506 | AY.9.2.1 | 1 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 486 | 486 | AY.28 | 0.918715 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 461 | 461 | AY.55 | 0.422936 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 451 | 451 | B.1 | 0.004131 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 406 | 406 | B.1.404 | 0.528646 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 392 | 392 | AY.56 | 0.629213 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 366 | 372 | AY.4 | 0.00057 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 6 | 372 | AY.4 | 0.000009 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 368 | 369 | B.1.177 | 0.004846 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 1 | 369 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 357 | 361 | AY.43 | 0.001582 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 4 | 361 | AY.43 | 0.000018 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 332 | 332 | AY.103 | 0.002061 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 301 | 301 | AY.13 | 0.048455 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 222 | 222 | AY.25 | 0.001335 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 173 | 175 | AY.39 | 0.004275 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 2 | 175 | AY.39 | 0.000049 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 170 | 170 | B.1.1.196 | 0.971429 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 166 | 166 | AY.99.2 | 0.015298 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 153 | 153 | AY.16.1 | 0.071898 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 142 | 142 | AY.19 | 0.161916 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 133 | 133 | C.1.2 | 0.565957 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 111 | 111 | AY.110 | 0.012508 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 107 | 107 | B.1.1.519 | 0.004249 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 97 | 101 | AY.3 | 0.000965 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 4 | 101 | AY.3 | 0.00004 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 98 | 98 | B.1.177.28 | 0.725926 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 97 | 97 | AY.48 | 0.045116 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 97 | 97 | B.1.429 | 0.002282 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 94 | 95 | B.1.2 | 0.000828 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctT | 1 | 95 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 83 | 83 | AY.113 | 0.011818 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 83 | 83 | AY.54 | 0.007914 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 78 | 78 | P.1 | 0.001229 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 72 | 72 | B.1.1 | 0.001306 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 71 | 71 | B | 0.009075 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 62 | 64 | AY.100 | 0.002852 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 2 | 64 | AY.100 | 0.000092 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 59 | 59 | AY.52 | 0.048046 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 59 | 59 | AY.98.1 | 0.002857 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 52 | 58 | AY.118 | 0.003258 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 6 | 58 | AY.118 | 0.000376 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 53 | 55 | AY.102 | 0.001405 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 2 | 55 | AY.102 | 0.000053 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 55 | 55 | AY.20 | 0.002138 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 51 | 51 | AY.114 | 0.011786 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 50 | 50 | AY.45 | 0.006084 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 46 | 46 | AY.117 | 0.003888 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 43 | 43 | AY.120.2 | 0.05527 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 43 | 43 | AY.16 | 0.016325 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 43 | 43 | AY.93 | 0.011742 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 40 | 40 | AY.42 | 0.001609 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 38 | 40 | D.2 | 0.002852 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctT | 2 | 40 | D.2 | 0.00015 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 38 | 38 | AY.21 | 0.072106 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 38 | 38 | AY.33 | 0.002538 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 36 | 36 | AY.105 | 0.023151 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 35 | 35 | AY.119 | 0.001236 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 35 | 35 | B.1.596 | 0.00305 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 33 | 33 | AY.46.2 | 0.020966 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 31 | 33 | AY.5 | 0.00064 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 2 | 33 | AY.5 | 0.000041 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 31 | 31 | AY.121 | 0.004195 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 31 | 31 | AY.32 | 0.016507 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 31 | 31 | AY.4.2.1 | 0.004619 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 31 | 31 | B.1.160 | 0.000967 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 30 | 30 | AY.50 | 0.023981 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 30 | 30 | B.1.1.333 | 0.032293 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 29 | 29 | B.1.526 | 0.000682 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 28 | 28 | AY.46 | 0.002914 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 28 | 28 | AY.98 | 0.002212 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 28 | 28 | B.1.1.214 | 0.001553 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 27 | 27 | AY.23 | 0.001883 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 27 | 27 | B.1.1.291 | 0.020045 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 23 | 24 | B.1.351 | 0.000684 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 1 | 24 | B.1.351 | 0.00003 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 23 | 23 | AY.5.3 | 0.00776 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 23 | 23 | C.36.3.1 | 0.0625 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 22 | 22 | AY.29 | 0.000347 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 22 | 22 | AY.77 | 0.024803 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 20 | 20 | AY.120 | 0.000744 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 20 | 20 | AY.91 | 0.014609 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 20 | 20 | B.1.239 | 0.02442 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 20 | 20 | B.1.243 | 0.001392 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 19 | 19 | AY.35 | 0.004428 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 18 | 18 | AY.39.1 | 0.000713 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 18 | 18 | B.1.214.2 | 0.010791 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 17 | 17 | AY.46.6 | 0.001228 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 17 | 17 | AY.53 | 0.004888 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 16 | 17 | AY.6 | 0.000658 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 1 | 17 | AY.6 | 0.000041 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 17 | 17 | B.1.416 | 0.021574 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 15 | 15 | AY.86 | 0.012448 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 14 | 14 | AY.40 | 0.0135 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 14 | 14 | P.1.15 | 0.003253 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 13 | 13 | AY.1 | 0.005144 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 13 | 13 | AY.88 | 0.011494 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 9 | 12 | AY.3.1 | 0.000767 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 3 | 12 | AY.3.1 | 0.000256 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 12 | 12 | AY.30 | 0.004749 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 11 | 11 | B.1.177.32 | 0.014845 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 11 | 11 | B.1.595 | 0.002871 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 10 | 10 | AY.116 | 0.002868 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 10 | 10 | AY.90 | 0.006845 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 10 | 10 | B.1.36.8 | 0.01 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 10 | 10 | B.1.575.1 | 0.02439 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 10 | 10 | B.1.630 | 0.052356 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 9 | 9 | AY.106 | 0.003014 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 9 | 9 | AY.46.1 | 0.00924 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctC | 5 | 9 | AY.76 | 0.024155 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 9 | AY.76 | 0.019324 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 9 | 9 | B.1.1.317 | 0.003705 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 9 | 9 | B.1.1.397 | 0.02027 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 9 | 9 | B.1.336 | 0.021951 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 9 | 9 | B.1.628 | 0.003171 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 9 | 9 | Q.1 | 0.001137 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 8 | 8 | AY.108 | 0.00882 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 8 | 8 | AY.14 | 0.000704 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 8 | 8 | AY.92 | 0.002298 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 8 | 8 | B.1.36.19 | 0.074074 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 8 | B.1.617.1 | 0.000645 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctC | 3 | 8 | B.1.617.1 | 0.000387 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 8 | 8 | C.31 | 0.142857 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 8 | 8 | P.1.17 | 0.001294 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 7 | 7 | AY.115 | 0.036458 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 7 | 7 | AY.49 | 0.022364 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 7 | 7 | AY.87 | 0.005828 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 7 | 7 | C.35 | 0.005418 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | AY.107 | 0.002796 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | B.1.632 | 0.040268 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 6 | 6 | C.8 | 0.026786 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | AY.81 | 0.00996 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | AY.95 | 0.003805 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | B.1.1.263 | 0.007788 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | B.1.157 | 0.014925 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | B.1.177.47 | 0.064935 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 4 | AY.79 | 0.003632 |
ORF1ab/nsp9 | 112 | L112L | ctA | ctG | 1 | 4 | AY.79 | 0.001211 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.459 | 0.016327 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.564.1 | 0.006309 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.131 | 0.026316 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.177.3 | 0.022901 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.214 | 0.010989 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.456 | 0.009804 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | AY.17 | 0.016393 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.149 | 0.006849 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.170 | 0.008621 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.36.25 | 0.004415 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.1.94 | 0.054054 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | 0.055556 | |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | A | 0.000387 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.14 | 0.017544 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.548 | 0.035714 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.604 | 0.017241 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | B.6.3 | 0.026316 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp9 | 112 | L112L | Cta | Tta | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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