CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = D25G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp925D25GD4165GnonsyngAtgGt7447430.99865612758-12760
ORF1ab/nsp925D25GD4165GnonsyngATgGC74410.0013440912758-12760

Details of the mutation D25G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp925D25GgAtgGt743744All0.000142
ORF1ab/nsp925D25GgATgGC1744All0
ORF1ab/nsp925D25GgAtgGt479479B.1.2360.983573
ORF1ab/nsp925D25GgAtgGt4444AY.260.001246
ORF1ab/nsp925D25GgAtgGt3131B.1.1180.208054
ORF1ab/nsp925D25GgAtgGt1516B.10.000137
ORF1ab/nsp925D25GgATgGC116B.10.000009
ORF1ab/nsp925D25GgAtgGt1616B.1.1.70.000014
ORF1ab/nsp925D25GgAtgGt1616B.1.1580.380952
ORF1ab/nsp925D25GgAtgGt1515AY.40.000023
ORF1ab/nsp925D25GgAtgGt1212B.1.617.20.000045
ORF1ab/nsp925D25GgAtgGt99P.10.000142
ORF1ab/nsp925D25GgAtgGt88B.1.1770.000105
ORF1ab/nsp925D25GgAtgGt77AY.440.000043
ORF1ab/nsp925D25GgAtgGt66AY.200.000233
ORF1ab/nsp925D25GgAtgGt66B.1.177.430.008863
ORF1ab/nsp925D25GgAtgGt66B.1.20.000053
ORF1ab/nsp925D25GgAtgGt55C.36.30.002836
ORF1ab/nsp925D25GgAtgGt44AY.610.000419
ORF1ab/nsp925D25GgAtgGt33B.1.10.000054
ORF1ab/nsp925D25GgAtgGt33B.1.2580.0002
ORF1ab/nsp925D25GgAtgGt33B.1.4290.000071
ORF1ab/nsp925D25GgAtgGt22AY.1000.000092
ORF1ab/nsp925D25GgAtgGt22AY.1030.000012
ORF1ab/nsp925D25GgAtgGt22AY.1190.000071
ORF1ab/nsp925D25GgAtgGt22AY.1200.000074
ORF1ab/nsp925D25GgAtgGt22AY.250.000012
ORF1ab/nsp925D25GgAtgGt22AY.4.50.000215
ORF1ab/nsp925D25GgAtgGt22AY.420.00008
ORF1ab/nsp925D25GgAtgGt22AY.470.000062
ORF1ab/nsp925D25GgAtgGt22AY.50.000041
ORF1ab/nsp925D25GgAtgGt22B0.000256
ORF1ab/nsp925D25GgAtgGt22B.1.36.390.004435
ORF1ab/nsp925D25GgAtgGt22B.1.5760.001813
ORF1ab/nsp925D25GgAtgGt11A.210.00277
ORF1ab/nsp925D25GgAtgGt11AD.20.000219
ORF1ab/nsp925D25GgAtgGt11AY.1160.000287
ORF1ab/nsp925D25GgAtgGt11AY.190.00114
ORF1ab/nsp925D25GgAtgGt11AY.30.00001
ORF1ab/nsp925D25GgAtgGt11AY.3.10.000085
ORF1ab/nsp925D25GgAtgGt11AY.390.000025
ORF1ab/nsp925D25GgAtgGt11AY.400.000964
ORF1ab/nsp925D25GgAtgGt11AY.430.000004
ORF1ab/nsp925D25GgAtgGt11AY.5.30.000337
ORF1ab/nsp925D25GgAtgGt11AY.9.20.000037
ORF1ab/nsp925D25GgAtgGt11B.1.1.1610.003534
ORF1ab/nsp925D25GgAtgGt11B.1.1.2220.000204
ORF1ab/nsp925D25GgAtgGt11B.1.1.330.000421
ORF1ab/nsp925D25GgAtgGt11B.1.1.3720.000689
ORF1ab/nsp925D25GgAtgGt11B.1.1.470.005348
ORF1ab/nsp925D25GgAtgGt11B.1.1.4860.001577
ORF1ab/nsp925D25GgAtgGt11B.1.1.580.005376
ORF1ab/nsp925D25GgAtgGt11B.1.1.700.000341
ORF1ab/nsp925D25GgAtgGt11B.1.1460.004237
ORF1ab/nsp925D25GgAtgGt11B.1.1600.000031
ORF1ab/nsp925D25GgAtgGt11B.1.177.230.003236
ORF1ab/nsp925D25GgAtgGt11B.1.177.440.000519
ORF1ab/nsp925D25GgAtgGt11B.1.177.500.004695
ORF1ab/nsp925D25GgAtgGt11B.1.2060.000816
ORF1ab/nsp925D25GgAtgGt11B.1.2340.000132
ORF1ab/nsp925D25GgAtgGt11B.1.2430.00007
ORF1ab/nsp925D25GgAtgGt11B.1.4040.001302
ORF1ab/nsp925D25GgAtgGt11B.1.4270.00005
ORF1ab/nsp925D25GgAtgGt11C.230.005814
ORF1ab/nsp925D25GgAtgGt11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.