CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = A16A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp916A16AA4156AsyngcCgcT300226360.87808112731-12733
ORF1ab/nsp916A16AA4156AsyngcCgcA30023660.12191912731-12733

Details of the mutation A16A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp916A16AgcCgcT26363002All0.000504
ORF1ab/nsp916A16AgcCgcA3663002All0.00007
ORF1ab/nsp916A16AgcCgcT693693B.1.1770.009125
ORF1ab/nsp916A16AgcCgcA244244B.1.1.2430.995918
ORF1ab/nsp916A16AgcCgcT228232AY.40.000355
ORF1ab/nsp916A16AgcCgcA4232AY.40.000006
ORF1ab/nsp916A16AgcCgcT184198B.1.1.70.000165
ORF1ab/nsp916A16AgcCgcA14198B.1.1.70.000013
ORF1ab/nsp916A16AgcCgcT157158AY.1030.000975
ORF1ab/nsp916A16AgcCgcA1158AY.1030.000006
ORF1ab/nsp916A16AgcCgcT143143B.1.4270.007221
ORF1ab/nsp916A16AgcCgcT9298B.1.617.20.000346
ORF1ab/nsp916A16AgcCgcA698B.1.617.20.000023
ORF1ab/nsp916A16AgcCgcT9393P.10.001465
ORF1ab/nsp916A16AgcCgcT9292B.1.2400.019832
ORF1ab/nsp916A16AgcCgcT7576AY.440.000457
ORF1ab/nsp916A16AgcCgcA176AY.440.000006
ORF1ab/nsp916A16AgcCgcT5656B.1.4290.001318
ORF1ab/nsp916A16AgcCgcT4649AY.430.000204
ORF1ab/nsp916A16AgcCgcA349AY.430.000013
ORF1ab/nsp916A16AgcCgcA3047B.1.10.000544
ORF1ab/nsp916A16AgcCgcT1747B.1.10.000308
ORF1ab/nsp916A16AgcCgcT3939B.1.1.5190.001549
ORF1ab/nsp916A16AgcCgcT3737AY.420.001489
ORF1ab/nsp916A16AgcCgcT3637B.1.20.000317
ORF1ab/nsp916A16AgcCgcA137B.1.20.000009
ORF1ab/nsp916A16AgcCgcT3636B.1.1.2140.001996
ORF1ab/nsp916A16AgcCgcT3535Q.10.004421
ORF1ab/nsp916A16AgcCgcT2430B.10.00022
ORF1ab/nsp916A16AgcCgcA630B.10.000055
ORF1ab/nsp916A16AgcCgcT2828AY.1020.000742
ORF1ab/nsp916A16AgcCgcT2425AY.470.000747
ORF1ab/nsp916A16AgcCgcA125AY.470.000031
ORF1ab/nsp916A16AgcCgcT2124AY.30.000209
ORF1ab/nsp916A16AgcCgcA324AY.30.00003
ORF1ab/nsp916A16AgcCgcT2123AY.50.000434
ORF1ab/nsp916A16AgcCgcA223AY.50.000041
ORF1ab/nsp916A16AgcCgcT2323AY.850.009825
ORF1ab/nsp916A16AgcCgcT2323B.1.2580.001531
ORF1ab/nsp916A16AgcCgcT1722AY.250.000102
ORF1ab/nsp916A16AgcCgcA522AY.250.00003
ORF1ab/nsp916A16AgcCgcT1617B.1.1600.000499
ORF1ab/nsp916A16AgcCgcA117B.1.1600.000031
ORF1ab/nsp916A16AgcCgcT916AY.1000.000414
ORF1ab/nsp916A16AgcCgcA716AY.1000.000322
ORF1ab/nsp916A16AgcCgcT1414AY.290.000221
ORF1ab/nsp916A16AgcCgcT1313AY.360.001927
ORF1ab/nsp916A16AgcCgcT1212AY.140.001056
ORF1ab/nsp916A16AgcCgcT1212B.1.2210.000852
ORF1ab/nsp916A16AgcCgcT1111B.1.4260.0111
ORF1ab/nsp916A16AgcCgcT1010AE.80.00489
ORF1ab/nsp916A16AgcCgcT1010B.1.6020.065359
ORF1ab/nsp916A16AgcCgcT69AY.260.00017
ORF1ab/nsp916A16AgcCgcA39AY.260.000085
ORF1ab/nsp916A16AgcCgcT99AY.390.000222
ORF1ab/nsp916A16AgcCgcT99B.1.3110.002471
ORF1ab/nsp916A16AgcCgcT88AY.540.000763
ORF1ab/nsp916A16AgcCgcT88B.1.1.3660.126984
ORF1ab/nsp916A16AgcCgcT88P.1.140.000382
ORF1ab/nsp916A16AgcCgcT57AY.200.000194
ORF1ab/nsp916A16AgcCgcA27AY.200.000078
ORF1ab/nsp916A16AgcCgcT77B.1.3510.000208
ORF1ab/nsp916A16AgcCgcT66AY.1190.000212
ORF1ab/nsp916A16AgcCgcT56AY.9.20.000184
ORF1ab/nsp916A16AgcCgcA16AY.9.20.000037
ORF1ab/nsp916A16AgcCgcT66B.1.1.2840.000644
ORF1ab/nsp916A16AgcCgcT66B.1.160.300.017857
ORF1ab/nsp916A16AgcCgcT46C.370.000464
ORF1ab/nsp916A16AgcCgcA26C.370.000232
ORF1ab/nsp916A16AgcCgcT55AY.330.000334
ORF1ab/nsp916A16AgcCgcT55AY.75.10.000902
ORF1ab/nsp916A16AgcCgcA35B0.000383
ORF1ab/nsp916A16AgcCgcT25B0.000256
ORF1ab/nsp916A16AgcCgcT55B.1.1.1220.227273
ORF1ab/nsp916A16AgcCgcT55B.1.1.280.001556
ORF1ab/nsp916A16AgcCgcT55B.1.177.670.038168
ORF1ab/nsp916A16AgcCgcT55B.1.3690.001426
ORF1ab/nsp916A16AgcCgcA55B.1.416.10.007812
ORF1ab/nsp916A16AgcCgcT55B.1.5610.001985
ORF1ab/nsp916A16AgcCgcT44AY.1200.000149
ORF1ab/nsp916A16AgcCgcT44AY.60.000165
ORF1ab/nsp916A16AgcCgcT34B.1.2430.000209
ORF1ab/nsp916A16AgcCgcA14B.1.2430.00007
ORF1ab/nsp916A16AgcCgcT44B.1.6210.000354
ORF1ab/nsp916A16AgcCgcT44D.20.0003
ORF1ab/nsp916A16AgcCgcT44P.1.120.001936
ORF1ab/nsp916A16AgcCgcT44P.1.150.000929
ORF1ab/nsp916A16AgcCgcT33AT.10.015385
ORF1ab/nsp916A16AgcCgcT33AY.10.001187
ORF1ab/nsp916A16AgcCgcT33AY.29.10.000662
ORF1ab/nsp916A16AgcCgcT33AY.400.002893
ORF1ab/nsp916A16AgcCgcT33AY.450.000365
ORF1ab/nsp916A16AgcCgcT33AY.46.60.000217
ORF1ab/nsp916A16AgcCgcT33AY.700.000626
ORF1ab/nsp916A16AgcCgcT23B.1.1.700.000682
ORF1ab/nsp916A16AgcCgcA13B.1.1.700.000341
ORF1ab/nsp916A16AgcCgcT33B.1.177.770.002179
ORF1ab/nsp916A16AgcCgcT33B.1.5960.000261
ORF1ab/nsp916A16AgcCgcA33B.1.780.025641
ORF1ab/nsp916A16AgcCgcA23R.10.00018
ORF1ab/nsp916A16AgcCgcT13R.10.00009
ORF1ab/nsp916A16AgcCgcT22A.2.50.000998
ORF1ab/nsp916A16AgcCgcT22A.270.003311
ORF1ab/nsp916A16AgcCgcT22AY.190.002281
ORF1ab/nsp916A16AgcCgcT22AY.3.10.000171
ORF1ab/nsp916A16AgcCgcT22AY.340.000194
ORF1ab/nsp916A16AgcCgcT22AY.39.10.000079
ORF1ab/nsp916A16AgcCgcT22AY.4.2.10.000298
ORF1ab/nsp916A16AgcCgcT22AY.610.00021
ORF1ab/nsp916A16AgcCgcT22AY.790.002421
ORF1ab/nsp916A16AgcCgcT22AY.90.000135
ORF1ab/nsp916A16AgcCgcT22AY.980.000158
ORF1ab/nsp916A16AgcCgcT22AY.98.10.000097
ORF1ab/nsp916A16AgcCgcT22B.1.1.2690.002706
ORF1ab/nsp916A16AgcCgcA22B.1.1.3700.025316
ORF1ab/nsp916A16AgcCgcT22B.1.177.400.010309
ORF1ab/nsp916A16AgcCgcT22B.1.177.570.000562
ORF1ab/nsp916A16AgcCgcT22B.1.177.600.000437
ORF1ab/nsp916A16AgcCgcT22B.1.177.730.001133
ORF1ab/nsp916A16AgcCgcT22B.1.2410.001623
ORF1ab/nsp916A16AgcCgcA22B.1.360.000292
ORF1ab/nsp916A16AgcCgcT22B.1.36.290.001035
ORF1ab/nsp916A16AgcCgcT22B.1.4410.019231
ORF1ab/nsp916A16AgcCgcT22B.1.6200.001892
ORF1ab/nsp916A16AgcCgcT22B.1.930.001867
ORF1ab/nsp916A16AgcCgcT11AY.1130.000142
ORF1ab/nsp916A16AgcCgcT11AY.116.10.000311
ORF1ab/nsp916A16AgcCgcT11AY.1170.000085
ORF1ab/nsp916A16AgcCgcT11AY.130.000161
ORF1ab/nsp916A16AgcCgcT11AY.20.000356
ORF1ab/nsp916A16AgcCgcT11AY.230.00007
ORF1ab/nsp916A16AgcCgcT11AY.270.000065
ORF1ab/nsp916A16AgcCgcA11AY.320.000532
ORF1ab/nsp916A16AgcCgcT11AY.350.000233
ORF1ab/nsp916A16AgcCgcT11AY.39.1.10.000725
ORF1ab/nsp916A16AgcCgcT11AY.4.40.000409
ORF1ab/nsp916A16AgcCgcT11AY.410.000294
ORF1ab/nsp916A16AgcCgcT11AY.460.000104
ORF1ab/nsp916A16AgcCgcT11AY.46.10.001027
ORF1ab/nsp916A16AgcCgcT11AY.46.30.000934
ORF1ab/nsp916A16AgcCgcT11AY.46.40.000165
ORF1ab/nsp916A16AgcCgcT11AY.5.20.002463
ORF1ab/nsp916A16AgcCgcT11AY.530.000288
ORF1ab/nsp916A16AgcCgcA11AY.560.001605
ORF1ab/nsp916A16AgcCgcA11AY.650.000533
ORF1ab/nsp916A16AgcCgcT11AY.670.000464
ORF1ab/nsp916A16AgcCgcT11AY.680.000274
ORF1ab/nsp916A16AgcCgcT11AY.7.10.000113
ORF1ab/nsp916A16AgcCgcT11AY.890.004902
ORF1ab/nsp916A16AgcCgcT11AY.9.10.000084
ORF1ab/nsp916A16AgcCgcT11AY.910.00073
ORF1ab/nsp916A16AgcCgcT11AY.990.001049
ORF1ab/nsp916A16AgcCgcT11AY.99.20.000092
ORF1ab/nsp916A16AgcCgcT11B.1.1.1760.000439
ORF1ab/nsp916A16AgcCgcA11B.1.1.1920.002309
ORF1ab/nsp916A16AgcCgcA11B.1.1.3090.005848
ORF1ab/nsp916A16AgcCgcT11B.1.1.3760.005952
ORF1ab/nsp916A16AgcCgcT11B.1.1.390.00051
ORF1ab/nsp916A16AgcCgcT11B.1.1.4090.002833
ORF1ab/nsp916A16AgcCgcT11B.1.1.4340.000349
ORF1ab/nsp916A16AgcCgcT11B.1.1050.009615
ORF1ab/nsp916A16AgcCgcT11B.1.1110.001175
ORF1ab/nsp916A16AgcCgcT11B.1.1260.001276
ORF1ab/nsp916A16AgcCgcT11B.1.177.210.000076
ORF1ab/nsp916A16AgcCgcT11B.1.177.50.001242
ORF1ab/nsp916A16AgcCgcT11B.1.177.530.002392
ORF1ab/nsp916A16AgcCgcT11B.1.177.690.001484
ORF1ab/nsp916A16AgcCgcT11B.1.177.850.005435
ORF1ab/nsp916A16AgcCgcT11B.1.2650.001271
ORF1ab/nsp916A16AgcCgcA11B.1.3010.005917
ORF1ab/nsp916A16AgcCgcT11B.1.351.30.000876
ORF1ab/nsp916A16AgcCgcA11B.1.36.100.004785
ORF1ab/nsp916A16AgcCgcT11B.1.36.170.000494
ORF1ab/nsp916A16AgcCgcT11B.1.36.260.002857
ORF1ab/nsp916A16AgcCgcT11B.1.3670.000792
ORF1ab/nsp916A16AgcCgcT11B.1.3820.008929
ORF1ab/nsp916A16AgcCgcT11B.1.438.10.000107
ORF1ab/nsp916A16AgcCgcT11B.1.466.20.000391
ORF1ab/nsp916A16AgcCgcT11B.1.4690.00361
ORF1ab/nsp916A16AgcCgcT11B.1.5160.001957
ORF1ab/nsp916A16AgcCgcT11B.1.5210.004975
ORF1ab/nsp916A16AgcCgcT11B.1.5260.000024
ORF1ab/nsp916A16AgcCgcT11B.1.5380.008065
ORF1ab/nsp916A16AgcCgcT11B.1.5580.004566
ORF1ab/nsp916A16AgcCgcT11B.1.5640.000426
ORF1ab/nsp916A16AgcCgcT11B.1.5650.00081
ORF1ab/nsp916A16AgcCgcT11B.1.5750.000303
ORF1ab/nsp916A16AgcCgcT11B.1.5760.000907
ORF1ab/nsp916A16AgcCgcT11B.1.5770.000687
ORF1ab/nsp916A16AgcCgcT11B.1.6090.000479
ORF1ab/nsp916A16AgcCgcT11B.1.6190.000871
ORF1ab/nsp916A16AgcCgcT11B.1.6230.000536
ORF1ab/nsp916A16AgcCgcT11B.1.9.50.005682
ORF1ab/nsp916A16AgcCgcA11B.60.00091
ORF1ab/nsp916A16AgcCgcA11B.6.60.000889
ORF1ab/nsp916A16AgcCgcT11C.36.3.10.002717
ORF1ab/nsp916A16AgcCgcT11P.1.160.000374
ORF1ab/nsp916A16AgcCgcT11P.1.80.004785
ORF1ab/nsp916A16AgcCgcA11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.