CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : Mut = A15A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp915A15AA4155AsyngcTgcG8904630.52022512728-12730
ORF1ab/nsp915A15AA4155AsyngcTgcC8903270.36741612728-12730
ORF1ab/nsp915A15AA4155AsyngcTgcA8901000.1123612728-12730

Details of the mutation A15A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp915A15AgcTgcG463890All0.000089
ORF1ab/nsp915A15AgcTgcC327890All0.000063
ORF1ab/nsp915A15AgcTgcA100890All0.000019
ORF1ab/nsp915A15AgcTgcG406406B.1.6250.955294
ORF1ab/nsp915A15AgcTgcC88124B.1.1.70.000079
ORF1ab/nsp915A15AgcTgcA36124B.1.1.70.000032
ORF1ab/nsp915A15AgcTgcC5562AY.40.000086
ORF1ab/nsp915A15AgcTgcA462AY.40.000006
ORF1ab/nsp915A15AgcTgcG362AY.40.000005
ORF1ab/nsp915A15AgcTgcG3137B.10.000284
ORF1ab/nsp915A15AgcTgcA437B.10.000037
ORF1ab/nsp915A15AgcTgcC237B.10.000018
ORF1ab/nsp915A15AgcTgcC3536B.1.258.170.003639
ORF1ab/nsp915A15AgcTgcA136B.1.258.170.000104
ORF1ab/nsp915A15AgcTgcC3030B.1.20.000264
ORF1ab/nsp915A15AgcTgcC2225AY.1030.000137
ORF1ab/nsp915A15AgcTgcA225AY.1030.000012
ORF1ab/nsp915A15AgcTgcG125AY.1030.000006
ORF1ab/nsp915A15AgcTgcG1214AY.250.000072
ORF1ab/nsp915A15AgcTgcC214AY.250.000012
ORF1ab/nsp915A15AgcTgcC713P.10.00011
ORF1ab/nsp915A15AgcTgcA513P.10.000079
ORF1ab/nsp915A15AgcTgcG113P.10.000016
ORF1ab/nsp915A15AgcTgcC1011B.1.617.20.000038
ORF1ab/nsp915A15AgcTgcA111B.1.617.20.000004
ORF1ab/nsp915A15AgcTgcC99AY.1090.006657
ORF1ab/nsp915A15AgcTgcC99AY.430.00004
ORF1ab/nsp915A15AgcTgcC46AY.440.000024
ORF1ab/nsp915A15AgcTgcA26AY.440.000012
ORF1ab/nsp915A15AgcTgcC46B.1.10.000073
ORF1ab/nsp915A15AgcTgcA26B.1.10.000036
ORF1ab/nsp915A15AgcTgcC55AY.60.000206
ORF1ab/nsp915A15AgcTgcA45B.1.617.10.000516
ORF1ab/nsp915A15AgcTgcC15B.1.617.10.000129
ORF1ab/nsp915A15AgcTgcC44AY.4.20.000087
ORF1ab/nsp915A15AgcTgcC44B.1.1.3740.009501
ORF1ab/nsp915A15AgcTgcC44B.1.1.700.001364
ORF1ab/nsp915A15AgcTgcA44B.1.1490.013699
ORF1ab/nsp915A15AgcTgcC34B.1.1770.00004
ORF1ab/nsp915A15AgcTgcA14B.1.1770.000013
ORF1ab/nsp915A15AgcTgcA34B.1.4290.000071
ORF1ab/nsp915A15AgcTgcC14B.1.4290.000024
ORF1ab/nsp915A15AgcTgcA23AY.30.00002
ORF1ab/nsp915A15AgcTgcG13AY.30.00001
ORF1ab/nsp915A15AgcTgcC33B.4.70.030303
ORF1ab/nsp915A15AgcTgcC220.111111
ORF1ab/nsp915A15AgcTgcA12AY.1020.000027
ORF1ab/nsp915A15AgcTgcC12AY.1020.000027
ORF1ab/nsp915A15AgcTgcC22AY.130.000322
ORF1ab/nsp915A15AgcTgcA22AY.200.000078
ORF1ab/nsp915A15AgcTgcC22AY.46.40.000329
ORF1ab/nsp915A15AgcTgcA22AY.570.001312
ORF1ab/nsp915A15AgcTgcC12AY.750.000056
ORF1ab/nsp915A15AgcTgcA12AY.750.000056
ORF1ab/nsp915A15AgcTgcA22B.1.1.3370.007194
ORF1ab/nsp915A15AgcTgcG22B.1.1280.001271
ORF1ab/nsp915A15AgcTgcG12B.1.1600.000031
ORF1ab/nsp915A15AgcTgcA12B.1.1600.000031
ORF1ab/nsp915A15AgcTgcA22B.1.3510.000059
ORF1ab/nsp915A15AgcTgcC22C.370.000232
ORF1ab/nsp915A15AgcTgcA12D.20.000075
ORF1ab/nsp915A15AgcTgcC12D.20.000075
ORF1ab/nsp915A15AgcTgcG11A.230.010526
ORF1ab/nsp915A15AgcTgcC11AK.20.045455
ORF1ab/nsp915A15AgcTgcC11AY.1000.000046
ORF1ab/nsp915A15AgcTgcA11AY.1130.000142
ORF1ab/nsp915A15AgcTgcC11AY.1140.000231
ORF1ab/nsp915A15AgcTgcA11AY.1190.000035
ORF1ab/nsp915A15AgcTgcC11AY.1200.000037
ORF1ab/nsp915A15AgcTgcC11AY.20.000356
ORF1ab/nsp915A15AgcTgcA11AY.290.000016
ORF1ab/nsp915A15AgcTgcA11AY.29.10.000221
ORF1ab/nsp915A15AgcTgcA11AY.330.000067
ORF1ab/nsp915A15AgcTgcC11AY.50.000021
ORF1ab/nsp915A15AgcTgcA11AY.5.40.000277
ORF1ab/nsp915A15AgcTgcC11AY.740.000116
ORF1ab/nsp915A15AgcTgcC11AY.9.20.000037
ORF1ab/nsp915A15AgcTgcA11AZ.30.00152
ORF1ab/nsp915A15AgcTgcA11B.1.1.1740.003378
ORF1ab/nsp915A15AgcTgcG11B.1.1.260.005236
ORF1ab/nsp915A15AgcTgcA11B.1.1.3160.000925
ORF1ab/nsp915A15AgcTgcA11B.1.1.3690.000446
ORF1ab/nsp915A15AgcTgcG11B.1.1.5070.008696
ORF1ab/nsp915A15AgcTgcA11B.1.177.100.000878
ORF1ab/nsp915A15AgcTgcC11B.1.177.180.00116
ORF1ab/nsp915A15AgcTgcC11B.1.177.650.000665
ORF1ab/nsp915A15AgcTgcG11B.1.214.20.0006
ORF1ab/nsp915A15AgcTgcA11B.1.2580.000067
ORF1ab/nsp915A15AgcTgcA11B.1.360.000146
ORF1ab/nsp915A15AgcTgcC11B.1.4590.004082
ORF1ab/nsp915A15AgcTgcC11B.1.5230.002451
ORF1ab/nsp915A15AgcTgcA11B.1.5260.000024
ORF1ab/nsp915A15AgcTgcC11B.1.5960.000087
ORF1ab/nsp915A15AgcTgcG11B.1.90.006173
ORF1ab/nsp915A15AgcTgcA11B.60.00091
ORF1ab/nsp915A15AgcTgcA11N.50.001767
ORF1ab/nsp915A15AgcTgcC11P.1.120.000484
ORF1ab/nsp915A15AgcTgcA11P.1.60.001946