CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 93 & Codon = ggG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp993G93GG4233GsynggAggG579857050.9839612962-12964

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp993G93GggAggG57055798All0.001091
ORF1ab/nsp993G93GggAggG49154915P.20.91732
ORF1ab/nsp993G93GggAggG238238AD.10.979424
ORF1ab/nsp993G93GggAggG99114B.1.1.70.000089
ORF1ab/nsp993G93GggAggG5252B.1.36.180.021849
ORF1ab/nsp993G93GggAggG4040AY.250.000241
ORF1ab/nsp993G93GggAggG3337AY.1030.000205
ORF1ab/nsp993G93GggAggG3336AY.40.000051
ORF1ab/nsp993G93GggAggG3333AY.440.000201
ORF1ab/nsp993G93GggAggG2731B.10.000247
ORF1ab/nsp993G93GggAggG2626AY.75.10.004688
ORF1ab/nsp993G93GggAggG2122B.1.617.20.000079
ORF1ab/nsp993G93GggAggG1620B.1.20.000141
ORF1ab/nsp993G93GggAggG1515B.1.10.000272
ORF1ab/nsp993G93GggAggG1212B.1.5750.003641
ORF1ab/nsp993G93GggAggG1010B.1.1.3150.084746
ORF1ab/nsp993G93GggAggG99AY.1020.000239
ORF1ab/nsp993G93GggAggG29AY.430.000009
ORF1ab/nsp993G93GggAggG99B.1.2430.000626
ORF1ab/nsp993G93GggAggG58P.10.000079
ORF1ab/nsp993G93GggAggG77AY.30.00007
ORF1ab/nsp993G93GggAggG66B.1.1.5190.000238
ORF1ab/nsp993G93GggAggG66B.1.4710.016393
ORF1ab/nsp993G93GggAggG55AY.110.006693
ORF1ab/nsp993G93GggAggG55B.1.1.280.001556
ORF1ab/nsp993G93GggAggG55B.1.2210.000355
ORF1ab/nsp993G93GggAggG44P.1.10.001271
ORF1ab/nsp993G93GggAggG44Q.10.000505
ORF1ab/nsp993G93GggAggG33A.2.5.30.030928
ORF1ab/nsp993G93GggAggG23AY.4.20.000043
ORF1ab/nsp993G93GggAggG33B.1.177.80.002257
ORF1ab/nsp993G93GggAggG33B.1.3810.023438
ORF1ab/nsp993G93GggAggG22AY.1000.000092
ORF1ab/nsp993G93GggAggG22AY.200.000078
ORF1ab/nsp993G93GggAggG22AY.290.000032
ORF1ab/nsp993G93GggAggG22AY.360.000296
ORF1ab/nsp993G93GggAggG22AY.390.000049
ORF1ab/nsp993G93GggAggG22AY.39.10.000079
ORF1ab/nsp993G93GggAggG22AY.460.000208
ORF1ab/nsp993G93GggAggG22AY.980.000158
ORF1ab/nsp993G93GggAggG22B.1.1.630.000772
ORF1ab/nsp993G93GggAggG22B.1.1600.000062
ORF1ab/nsp993G93GggAggG22B.1.2390.002442
ORF1ab/nsp993G93GggAggG22B.1.466.20.000782
ORF1ab/nsp993G93GggAggG22B.1.5260.000047
ORF1ab/nsp993G93GggAggG22B.1.5960.000174
ORF1ab/nsp993G93GggAggG22B.1.6360.013423
ORF1ab/nsp993G93GggAggG12P.1.100.000269
ORF1ab/nsp993G93GggAggG11A.2.50.000499
ORF1ab/nsp993G93GggAggG11AY.1110.000183
ORF1ab/nsp993G93GggAggG11AY.230.00007
ORF1ab/nsp993G93GggAggG11AY.260.000028
ORF1ab/nsp993G93GggAggG11AY.330.000067
ORF1ab/nsp993G93GggAggG11AY.420.00004
ORF1ab/nsp993G93GggAggG11AY.50.000021
ORF1ab/nsp993G93GggAggG11AY.800.001129
ORF1ab/nsp993G93GggAggG11B0.000128
ORF1ab/nsp993G93GggAggG11B.1.1.100.001115
ORF1ab/nsp993G93GggAggG11B.1.1.1280.007092
ORF1ab/nsp993G93GggAggG11B.1.1.1920.002309
ORF1ab/nsp993G93GggAggG11B.1.1.2220.000204
ORF1ab/nsp993G93GggAggG11B.1.1.3510.002793
ORF1ab/nsp993G93GggAggG11B.1.160.300.002976
ORF1ab/nsp993G93GggAggG11B.1.1770.000013
ORF1ab/nsp993G93GggAggG11B.1.177.160.000664
ORF1ab/nsp993G93GggAggG11B.1.177.730.000566
ORF1ab/nsp993G93GggAggG11B.1.2140.003663
ORF1ab/nsp993G93GggAggG11B.1.2220.001692
ORF1ab/nsp993G93GggAggG11B.1.3110.000275
ORF1ab/nsp993G93GggAggG11B.1.4070.035714
ORF1ab/nsp993G93GggAggG11B.1.4290.000024
ORF1ab/nsp993G93GggAggG11B.1.6090.000479
ORF1ab/nsp993G93GggAggG11B.1.6270.00202
ORF1ab/nsp993G93GggAggG11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.