CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 9 | L9L | L4149L | syn | Cta | Tta | 2480 | 2429 | 0.979436 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9L | L4149L | syn | ctA | ctG | 2480 | 42 | 0.0169355 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9L | L4149L | syn | ctA | ctT | 2480 | 5 | 0.00201613 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9L | L4149L | syn | ctA | ctC | 2480 | 4 | 0.0016129 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9I | L4149I | nonsyn | Cta | Ata | 47 | 47 | 1 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9P | L4149P | nonsyn | cTa | cCa | 24 | 24 | 1 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9del1 | L4149del1 | del | cTa | c-a | 14 | 8 | 0.571429 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9del1 | L4149del1 | del | Cta | -ta | 14 | 4 | 0.285714 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9del1 | L4149del1 | del | ctA | ct- | 14 | 1 | 0.0714286 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9del1 | L4149del1 | del | CTa | -Ca | 14 | 1 | 0.0714286 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9del | L4149del | del | CTA | --- | 13 | 13 | 1 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9del2 | L4149del2 | del | cTA | c-- | 7 | 6 | 0.857143 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9del2 | L4149del2 | del | CTA | T-- | 7 | 1 | 0.142857 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9V | L4149V | nonsyn | Cta | Gta | 6 | 6 | 1 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9R | L4149R | nonsyn | cTa | cGa | 3 | 2 | 0.666667 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9R | L4149R | nonsyn | cTA | cGT | 3 | 1 | 0.333333 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9Q | L4149Q | nonsyn | cTa | cAa | 2 | 2 | 1 | 12710-12712 |
ORF1ab/nsp9 | 9 | L9G | L4149G | nonsyn | CTA | GGG | 1 | 1 | 1 | 12710-12712 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2429 | 2480 | All | 0.000465 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 42 | 2480 | All | 0.000008 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctT | 5 | 2480 | All | 0.000001 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctC | 4 | 2480 | All | 0.000001 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1176 | 1177 | P.1 | 0.018527 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctC | 1 | 1177 | P.1 | 0.000016 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 261 | 261 | B.45 | 1 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 236 | 241 | B.1.617.2 | 0.000889 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 3 | 241 | B.1.617.2 | 0.000011 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctT | 2 | 241 | B.1.617.2 | 0.000008 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 153 | 153 | AY.74 | 0.017694 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 98 | 98 | AY.102 | 0.002598 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 86 | 89 | B.1.1.7 | 0.000077 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 3 | 89 | B.1.1.7 | 0.000003 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 60 | 61 | AY.43 | 0.000266 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctC | 1 | 61 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 47 | 47 | All | 0.000009 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 39 | 39 | AY.67 | 0.018106 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 27 | 29 | AY.4 | 0.000042 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 2 | 29 | AY.4 | 0.000003 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 25 | 25 | AY.98.1 | 0.001211 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 24 | 24 | All | 0.000005 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 19 | 20 | AY.26 | 0.000538 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 20 | AY.26 | 0.000028 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 14 | 15 | B.1 | 0.000128 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 15 | B.1 | 0.000009 |
ORF1ab/nsp9 | 9 | L9del1 | cTa | c-a | 8 | 14 | All | 0.000002 |
ORF1ab/nsp9 | 9 | L9del1 | Cta | -ta | 4 | 14 | All | 0.000001 |
ORF1ab/nsp9 | 9 | L9del1 | ctA | ct- | 1 | 14 | All | 0 |
ORF1ab/nsp9 | 9 | L9del1 | CTa | -Ca | 1 | 14 | All | 0 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 14 | 14 | AY.5.3 | 0.004723 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 14 | 14 | P.1.12 | 0.006776 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 13 | 13 | All | 0.000002 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 11 | 12 | AY.25 | 0.000066 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 12 | AY.25 | 0.000006 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 11 | 11 | P.1.15 | 0.002556 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 6 | 10 | B.1.177 | 0.000079 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 4 | 10 | B.1.177 | 0.000053 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 9 | 9 | AD.2.1 | 0.409091 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 9 | 9 | B.1.1.322 | 0.078947 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 7 | 8 | AY.44 | 0.000043 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 8 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 9 | L9del2 | cTA | c-- | 6 | 7 | All | 0.000001 |
ORF1ab/nsp9 | 9 | L9del2 | CTA | T-- | 1 | 7 | All | 0 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 6 | 7 | AY.3 | 0.00006 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctC | 1 | 7 | AY.3 | 0.00001 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp9 | 9 | L9V | Cta | Gta | 6 | 6 | All | 0.000001 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 5 | 6 | P.1.1 | 0.001588 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 6 | P.1.1 | 0.000318 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 4 | 5 | AY.75.1 | 0.000721 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 5 | AY.75.1 | 0.00018 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp9 | 9 | L9del1 | cTa | c-a | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp9 | 9 | L9del1 | CTa | -Ca | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 3 | 5 | B.1.160 | 0.000094 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 5 | B.1.160 | 0.000062 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 5 | 5 | B.1.160.16 | 0.004647 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 5 | 5 | B.1.577 | 0.003436 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 4 | 4 | 0.222222 | |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 4 | 4 | B.1.1.513 | 0.049383 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 4 | 4 | B.1.433 | 0.01278 |
ORF1ab/nsp9 | 9 | L9R | cTa | cGa | 2 | 3 | All | 0 |
ORF1ab/nsp9 | 9 | L9R | cTA | cGT | 1 | 3 | All | 0 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 3 | 3 | B | 0.000383 |
ORF1ab/nsp9 | 9 | L9del1 | cTa | c-a | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp9 | 9 | L9del1 | Cta | -ta | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp9 | 9 | L9del2 | cTA | c-- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 3 | 3 | B.1.160.30 | 0.008929 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp9 | 9 | L9Q | cTa | cAa | 2 | 2 | All | 0 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 2 | AY.16.1 | 0.00047 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 2 | AY.16.1 | 0.00047 |
ORF1ab/nsp9 | 9 | L9del2 | cTA | c-- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 2 | AY.34 | 0.000097 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 2 | AY.34 | 0.000097 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 2 | B.1.1.214 | 0.000055 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 2 | B.1.1.214 | 0.000055 |
ORF1ab/nsp9 | 9 | L9R | cTa | cGa | 1 | 2 | B.1.1.28 | 0.000311 |
ORF1ab/nsp9 | 9 | L9R | cTA | cGT | 1 | 2 | B.1.1.28 | 0.000311 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | B.1.1.53 | 0.027397 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp9 | 9 | L9G | CTA | GGG | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp9 | 9 | L9V | Cta | Gta | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp9 | 9 | L9Q | cTa | cAa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp9 | 9 | L9del1 | cTa | c-a | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp9 | 9 | L9del1 | ctA | ct- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp9 | 9 | L9V | Cta | Gta | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp9 | 9 | L9R | cTa | cGa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp9 | 9 | L9del1 | cTa | c-a | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp9 | 9 | L9del2 | CTA | T-- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.145 | 0.052632 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp9 | 9 | L9del1 | Cta | -ta | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp9 | 9 | L9Q | cTa | cAa | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp9 | 9 | L9V | Cta | Gta | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp9 | 9 | L9del1 | Cta | -ta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 9 | L9del1 | Cta | -ta | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 9 | L9I | Cta | Ata | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 9 | L9G | CTA | GGG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 9 | L9L | ctA | ctC | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.1.96 | 0.018868 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp9 | 9 | L9del | CTA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp9 | 9 | L9V | Cta | Gta | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 9 | L9L | Cta | Tta | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp9 | 9 | L9V | Cta | Gta | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp9 | 9 | L9P | cTa | cCa | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp9 | 9 | L9del2 | cTA | c-- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp9 | 9 | L9V | Cta | Gta | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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