CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 87 | Y87Y | Y4227Y | syn | taT | taC | 65732 | 65732 | 1 | 12944-12946 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 65732 | 65732 | All | 0.012572 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 18694 | 18694 | B.1.617.2 | 0.070391 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 11229 | 11229 | AY.14 | 0.988294 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 9981 | 9981 | AY.54 | 0.951659 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 5558 | 5558 | AY.13 | 0.89472 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3236 | 3236 | AY.53 | 0.93042 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2475 | 2475 | AY.30 | 0.979422 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2428 | 2428 | AY.16 | 0.921792 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1624 | 1624 | AY.8 | 0.984242 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1136 | 1136 | AY.50 | 0.908074 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1084 | 1084 | AY.16.1 | 0.509398 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1066 | 1066 | AY.51 | 0.969091 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 922 | 922 | AY.40 | 0.889103 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 823 | 823 | AY.52 | 0.670195 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 567 | 567 | B.1 | 0.005193 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 445 | 445 | AY.15 | 0.988889 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 398 | 398 | AY.43 | 0.001763 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 356 | 356 | AY.19 | 0.405929 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 273 | 273 | AY.49 | 0.872204 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 228 | 228 | AY.44 | 0.001388 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 200 | 200 | AY.75 | 0.011204 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 186 | 186 | AY.48 | 0.086512 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 163 | 163 | AY.68 | 0.044621 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 141 | 141 | AY.65 | 0.07516 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 139 | 139 | AY.3 | 0.001383 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 133 | 133 | AY.38 | 0.0664 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 125 | 125 | AY.9.2 | 0.004591 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 116 | 116 | AY.55 | 0.106422 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 99 | 99 | AY.62 | 0.043137 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 97 | 97 | AY.18 | 0.979798 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 96 | 96 | AY.75.1 | 0.01731 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 90 | 90 | AY.17 | 0.737705 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 88 | 88 | AY.67 | 0.040854 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 79 | 79 | AY.98 | 0.006241 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 62 | 62 | AY.39 | 0.001532 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 62 | 62 | B | 0.007924 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 54 | 54 | AY.26 | 0.001529 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 53 | 53 | AY.31 | 0.981481 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 52 | 52 | AY.56 | 0.083467 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 50 | 50 | AY.59 | 0.026483 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 49 | 49 | AY.64 | 0.029167 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 47 | 47 | AY.47 | 0.001462 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 46 | 46 | AY.105 | 0.029582 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 44 | 44 | AY.10 | 0.023317 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 39 | 39 | AY.117 | 0.003296 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 36 | 36 | AY.46 | 0.003747 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 36 | 36 | B.1.1.7 | 0.000032 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 34 | 34 | AY.103 | 0.000211 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 33 | 33 | AY.4.2.1 | 0.004917 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 32 | 32 | AY.61 | 0.003353 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 31 | 31 | AY.37 | 0.009798 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 31 | 31 | AY.70 | 0.006464 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 24 | 24 | AY.86 | 0.019917 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 23 | 23 | AY.5.4 | 0.006364 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 22 | 22 | B.1.214 | 0.080586 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 20 | 20 | AY.33 | 0.001336 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 19 | 19 | AY.23 | 0.001325 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 19 | 19 | AY.45 | 0.002312 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 18 | 18 | AY.73 | 0.011976 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 18 | 18 | AY.78 | 0.027735 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 17 | 17 | AY.35 | 0.003962 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 17 | 17 | AY.85 | 0.007262 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 16 | 16 | AY.4.2 | 0.000347 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 16 | 16 | AY.58 | 0.014519 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 15 | 15 | AY.24 | 0.006466 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 15 | 15 | AY.28 | 0.028355 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 15 | 15 | AY.9 | 0.001014 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 14 | 14 | AY.110 | 0.001578 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 14 | 14 | AY.21 | 0.026565 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 14 | 14 | AY.41 | 0.004115 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 14 | 14 | B.1.617.1 | 0.001806 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 11 | 11 | AY.77 | 0.012401 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 11 | 11 | AY.9.1 | 0.000921 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 10 | 10 | AY.7.1 | 0.001127 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 9 | 9 | AY.114 | 0.00208 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 8 | 8 | AY.106 | 0.002679 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 8 | 8 | AY.46.2 | 0.005083 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 7 | 7 | AY.93 | 0.001912 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 6 | 6 | AY.71 | 0.00285 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 6 | 6 | AY.87 | 0.004996 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 6 | 6 | AY.95 | 0.004566 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 5 | 5 | AY.7.2 | 0.002796 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 5 | 5 | AY.81 | 0.00996 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 4 | 4 | A | 0.001548 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | AY.66 | 0.003209 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | AY.72 | 0.004082 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | AY.99.1 | 0.004658 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | B.1.537 | 0.04 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.536 | 0.02381 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp9 | 87 | Y87Y | taT | taC | 1 | 1 | P.1.17 | 0.000162 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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