CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 87 & Codon = taC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp987Y87YY4227YsyntaTtaC6573265732112944-12946

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp987Y87YtaTtaC6573265732All0.012572
ORF1ab/nsp987Y87YtaTtaC1869418694B.1.617.20.070391
ORF1ab/nsp987Y87YtaTtaC1122911229AY.140.988294
ORF1ab/nsp987Y87YtaTtaC99819981AY.540.951659
ORF1ab/nsp987Y87YtaTtaC55585558AY.130.89472
ORF1ab/nsp987Y87YtaTtaC32363236AY.530.93042
ORF1ab/nsp987Y87YtaTtaC24752475AY.300.979422
ORF1ab/nsp987Y87YtaTtaC24282428AY.160.921792
ORF1ab/nsp987Y87YtaTtaC16241624AY.80.984242
ORF1ab/nsp987Y87YtaTtaC11361136AY.500.908074
ORF1ab/nsp987Y87YtaTtaC10841084AY.16.10.509398
ORF1ab/nsp987Y87YtaTtaC10661066AY.510.969091
ORF1ab/nsp987Y87YtaTtaC922922AY.400.889103
ORF1ab/nsp987Y87YtaTtaC823823AY.520.670195
ORF1ab/nsp987Y87YtaTtaC567567B.10.005193
ORF1ab/nsp987Y87YtaTtaC445445AY.150.988889
ORF1ab/nsp987Y87YtaTtaC398398AY.430.001763
ORF1ab/nsp987Y87YtaTtaC356356AY.190.405929
ORF1ab/nsp987Y87YtaTtaC273273AY.490.872204
ORF1ab/nsp987Y87YtaTtaC228228AY.440.001388
ORF1ab/nsp987Y87YtaTtaC200200AY.750.011204
ORF1ab/nsp987Y87YtaTtaC186186AY.480.086512
ORF1ab/nsp987Y87YtaTtaC163163AY.680.044621
ORF1ab/nsp987Y87YtaTtaC141141AY.650.07516
ORF1ab/nsp987Y87YtaTtaC139139AY.30.001383
ORF1ab/nsp987Y87YtaTtaC133133AY.380.0664
ORF1ab/nsp987Y87YtaTtaC125125AY.9.20.004591
ORF1ab/nsp987Y87YtaTtaC116116AY.550.106422
ORF1ab/nsp987Y87YtaTtaC9999AY.620.043137
ORF1ab/nsp987Y87YtaTtaC9797AY.180.979798
ORF1ab/nsp987Y87YtaTtaC9696AY.75.10.01731
ORF1ab/nsp987Y87YtaTtaC9090AY.170.737705
ORF1ab/nsp987Y87YtaTtaC8888AY.670.040854
ORF1ab/nsp987Y87YtaTtaC7979AY.980.006241
ORF1ab/nsp987Y87YtaTtaC6262AY.390.001532
ORF1ab/nsp987Y87YtaTtaC6262B0.007924
ORF1ab/nsp987Y87YtaTtaC5454AY.260.001529
ORF1ab/nsp987Y87YtaTtaC5353AY.310.981481
ORF1ab/nsp987Y87YtaTtaC5252AY.560.083467
ORF1ab/nsp987Y87YtaTtaC5050AY.590.026483
ORF1ab/nsp987Y87YtaTtaC4949AY.640.029167
ORF1ab/nsp987Y87YtaTtaC4747AY.470.001462
ORF1ab/nsp987Y87YtaTtaC4646AY.1050.029582
ORF1ab/nsp987Y87YtaTtaC4444AY.100.023317
ORF1ab/nsp987Y87YtaTtaC3939AY.1170.003296
ORF1ab/nsp987Y87YtaTtaC3636AY.460.003747
ORF1ab/nsp987Y87YtaTtaC3636B.1.1.70.000032
ORF1ab/nsp987Y87YtaTtaC3434AY.1030.000211
ORF1ab/nsp987Y87YtaTtaC3333AY.4.2.10.004917
ORF1ab/nsp987Y87YtaTtaC3232AY.610.003353
ORF1ab/nsp987Y87YtaTtaC3131AY.370.009798
ORF1ab/nsp987Y87YtaTtaC3131AY.700.006464
ORF1ab/nsp987Y87YtaTtaC2424AY.860.019917
ORF1ab/nsp987Y87YtaTtaC2323AY.5.40.006364
ORF1ab/nsp987Y87YtaTtaC2222B.1.2140.080586
ORF1ab/nsp987Y87YtaTtaC2020AY.330.001336
ORF1ab/nsp987Y87YtaTtaC1919AY.230.001325
ORF1ab/nsp987Y87YtaTtaC1919AY.450.002312
ORF1ab/nsp987Y87YtaTtaC1818AY.730.011976
ORF1ab/nsp987Y87YtaTtaC1818AY.780.027735
ORF1ab/nsp987Y87YtaTtaC1717AY.350.003962
ORF1ab/nsp987Y87YtaTtaC1717AY.850.007262
ORF1ab/nsp987Y87YtaTtaC1616AY.4.20.000347
ORF1ab/nsp987Y87YtaTtaC1616AY.580.014519
ORF1ab/nsp987Y87YtaTtaC1515AY.240.006466
ORF1ab/nsp987Y87YtaTtaC1515AY.280.028355
ORF1ab/nsp987Y87YtaTtaC1515AY.420.000603
ORF1ab/nsp987Y87YtaTtaC1515AY.90.001014
ORF1ab/nsp987Y87YtaTtaC1414AY.1100.001578
ORF1ab/nsp987Y87YtaTtaC1414AY.210.026565
ORF1ab/nsp987Y87YtaTtaC1414AY.250.000084
ORF1ab/nsp987Y87YtaTtaC1414AY.410.004115
ORF1ab/nsp987Y87YtaTtaC1414B.1.617.10.001806
ORF1ab/nsp987Y87YtaTtaC1111AY.1020.000292
ORF1ab/nsp987Y87YtaTtaC1111AY.770.012401
ORF1ab/nsp987Y87YtaTtaC1111AY.9.10.000921
ORF1ab/nsp987Y87YtaTtaC1010AY.1210.001353
ORF1ab/nsp987Y87YtaTtaC1010AY.40.000016
ORF1ab/nsp987Y87YtaTtaC1010AY.7.10.001127
ORF1ab/nsp987Y87YtaTtaC99AY.1140.00208
ORF1ab/nsp987Y87YtaTtaC88AY.1060.002679
ORF1ab/nsp987Y87YtaTtaC88AY.46.20.005083
ORF1ab/nsp987Y87YtaTtaC88B.1.4290.000188
ORF1ab/nsp987Y87YtaTtaC77AY.200.000272
ORF1ab/nsp987Y87YtaTtaC77AY.39.10.000277
ORF1ab/nsp987Y87YtaTtaC77AY.930.001912
ORF1ab/nsp987Y87YtaTtaC77B.1.20.000062
ORF1ab/nsp987Y87YtaTtaC66AY.1180.000376
ORF1ab/nsp987Y87YtaTtaC66AY.710.00285
ORF1ab/nsp987Y87YtaTtaC66AY.870.004996
ORF1ab/nsp987Y87YtaTtaC66AY.950.004566
ORF1ab/nsp987Y87YtaTtaC66B.1.10.000109
ORF1ab/nsp987Y87YtaTtaC55AY.1190.000177
ORF1ab/nsp987Y87YtaTtaC55AY.7.20.002796
ORF1ab/nsp987Y87YtaTtaC55AY.810.00996
ORF1ab/nsp987Y87YtaTtaC55AY.840.002187
ORF1ab/nsp987Y87YtaTtaC44A0.001548
ORF1ab/nsp987Y87YtaTtaC44AY.10.001583
ORF1ab/nsp987Y87YtaTtaC44AY.1160.001147
ORF1ab/nsp987Y87YtaTtaC44AY.320.00213
ORF1ab/nsp987Y87YtaTtaC44AY.340.000388
ORF1ab/nsp987Y87YtaTtaC44AY.880.003537
ORF1ab/nsp987Y87YtaTtaC44AY.99.20.000369
ORF1ab/nsp987Y87YtaTtaC44B.1.177.730.002265
ORF1ab/nsp987Y87YtaTtaC33AY.1000.000138
ORF1ab/nsp987Y87YtaTtaC33AY.1040.005952
ORF1ab/nsp987Y87YtaTtaC33AY.1200.000112
ORF1ab/nsp987Y87YtaTtaC33AY.3.10.000256
ORF1ab/nsp987Y87YtaTtaC33AY.660.003209
ORF1ab/nsp987Y87YtaTtaC33AY.720.004082
ORF1ab/nsp987Y87YtaTtaC33AY.920.000862
ORF1ab/nsp987Y87YtaTtaC33AY.98.10.000145
ORF1ab/nsp987Y87YtaTtaC33AY.99.10.004658
ORF1ab/nsp987Y87YtaTtaC33B.1.1.3260.005282
ORF1ab/nsp987Y87YtaTtaC33B.1.1770.00004
ORF1ab/nsp987Y87YtaTtaC33B.1.3510.000089
ORF1ab/nsp987Y87YtaTtaC33B.1.5760.00272
ORF1ab/nsp987Y87YtaTtaC22AY.1010.000981
ORF1ab/nsp987Y87YtaTtaC22AY.1090.001479
ORF1ab/nsp987Y87YtaTtaC22AY.1130.000285
ORF1ab/nsp987Y87YtaTtaC22AY.120.000632
ORF1ab/nsp987Y87YtaTtaC22AY.120.20.002571
ORF1ab/nsp987Y87YtaTtaC22AY.220.004184
ORF1ab/nsp987Y87YtaTtaC22AY.290.000032
ORF1ab/nsp987Y87YtaTtaC22AY.690.000373
ORF1ab/nsp987Y87YtaTtaC22AY.740.000231
ORF1ab/nsp987Y87YtaTtaC22AY.800.002257
ORF1ab/nsp987Y87YtaTtaC22AY.900.001369
ORF1ab/nsp987Y87YtaTtaC22AY.910.001461
ORF1ab/nsp987Y87YtaTtaC22B.1.5370.04
ORF1ab/nsp987Y87YtaTtaC22D.20.00015
ORF1ab/nsp987Y87YtaTtaC11AY.1080.001103
ORF1ab/nsp987Y87YtaTtaC11AY.110.001339
ORF1ab/nsp987Y87YtaTtaC11AY.1110.000183
ORF1ab/nsp987Y87YtaTtaC11AY.116.10.000311
ORF1ab/nsp987Y87YtaTtaC11AY.120.10.000321
ORF1ab/nsp987Y87YtaTtaC11AY.360.000148
ORF1ab/nsp987Y87YtaTtaC11AY.46.60.000072
ORF1ab/nsp987Y87YtaTtaC11AY.50.000021
ORF1ab/nsp987Y87YtaTtaC11AY.600.000938
ORF1ab/nsp987Y87YtaTtaC11AY.630.000387
ORF1ab/nsp987Y87YtaTtaC11AY.760.004831
ORF1ab/nsp987Y87YtaTtaC11AY.820.001357
ORF1ab/nsp987Y87YtaTtaC11AY.830.001724
ORF1ab/nsp987Y87YtaTtaC11AY.970.001701
ORF1ab/nsp987Y87YtaTtaC11B.1.1.3710.010417
ORF1ab/nsp987Y87YtaTtaC11B.1.1.3720.000689
ORF1ab/nsp987Y87YtaTtaC11B.1.1.5260.003546
ORF1ab/nsp987Y87YtaTtaC11B.1.1.540.003021
ORF1ab/nsp987Y87YtaTtaC11B.1.1570.002985
ORF1ab/nsp987Y87YtaTtaC11B.1.2340.000132
ORF1ab/nsp987Y87YtaTtaC11B.1.2430.00007
ORF1ab/nsp987Y87YtaTtaC11B.1.2580.000067
ORF1ab/nsp987Y87YtaTtaC11B.1.4590.004082
ORF1ab/nsp987Y87YtaTtaC11B.1.4620.007246
ORF1ab/nsp987Y87YtaTtaC11B.1.5170.000427
ORF1ab/nsp987Y87YtaTtaC11B.1.5260.000024
ORF1ab/nsp987Y87YtaTtaC11B.1.5300.007143
ORF1ab/nsp987Y87YtaTtaC11B.1.5360.02381
ORF1ab/nsp987Y87YtaTtaC11B.1.5950.000261
ORF1ab/nsp987Y87YtaTtaC11B.1.5960.000087
ORF1ab/nsp987Y87YtaTtaC11B.1.6210.000089
ORF1ab/nsp987Y87YtaTtaC11B.1.621.10.000506
ORF1ab/nsp987Y87YtaTtaC11P.10.000016
ORF1ab/nsp987Y87YtaTtaC11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.