CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 87

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp987Y87YY4227YsyntaTtaC6573265732112944-12946
ORF1ab/nsp987Y87CY4227CnonsyntAttGt116116112944-12946
ORF1ab/nsp987Y87FY4227FnonsyntAttTt7878112944-12946
ORF1ab/nsp987Y87delY4227deldelTAT---5050112944-12946
ORF1ab/nsp987Y87HY4227HnonsynTatCat1717112944-12946
ORF1ab/nsp987Y87del1Y4227del1deltaTta-15120.812944-12946
ORF1ab/nsp987Y87del1Y4227del1delTaT-aG1520.13333312944-12946
ORF1ab/nsp987Y87del1Y4227del1deltAtt-t1510.066666712944-12946
ORF1ab/nsp987Y87XY4227XnonsyntaTtaA1070.712944-12946
ORF1ab/nsp987Y87XY4227XnonsyntaTtaG1030.312944-12946
ORF1ab/nsp987Y87SY4227SnonsyntAttCt44112944-12946
ORF1ab/nsp987Y87DY4227DnonsynTatGat33112944-12946
ORF1ab/nsp987Y87NY4227NnonsynTatAat22112944-12946
ORF1ab/nsp987Y87del2Y4227del2delTAt--t22112944-12946
ORF1ab/nsp987Y87RY4227RnonsynTAtCGt11112944-12946

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp987Y87YtaTtaC6573265732All0.012572
ORF1ab/nsp987Y87YtaTtaC1869418694B.1.617.20.070391
ORF1ab/nsp987Y87YtaTtaC1122911229AY.140.988294
ORF1ab/nsp987Y87YtaTtaC99819981AY.540.951659
ORF1ab/nsp987Y87YtaTtaC55585558AY.130.89472
ORF1ab/nsp987Y87YtaTtaC32363236AY.530.93042
ORF1ab/nsp987Y87YtaTtaC24752475AY.300.979422
ORF1ab/nsp987Y87YtaTtaC24282428AY.160.921792
ORF1ab/nsp987Y87YtaTtaC16241624AY.80.984242
ORF1ab/nsp987Y87YtaTtaC11361136AY.500.908074
ORF1ab/nsp987Y87YtaTtaC10841084AY.16.10.509398
ORF1ab/nsp987Y87YtaTtaC10661066AY.510.969091
ORF1ab/nsp987Y87YtaTtaC922922AY.400.889103
ORF1ab/nsp987Y87YtaTtaC823823AY.520.670195
ORF1ab/nsp987Y87YtaTtaC567567B.10.005193
ORF1ab/nsp987Y87YtaTtaC445445AY.150.988889
ORF1ab/nsp987Y87YtaTtaC398398AY.430.001763
ORF1ab/nsp987Y87YtaTtaC356356AY.190.405929
ORF1ab/nsp987Y87YtaTtaC273273AY.490.872204
ORF1ab/nsp987Y87YtaTtaC228228AY.440.001388
ORF1ab/nsp987Y87YtaTtaC200200AY.750.011204
ORF1ab/nsp987Y87YtaTtaC186186AY.480.086512
ORF1ab/nsp987Y87YtaTtaC163163AY.680.044621
ORF1ab/nsp987Y87YtaTtaC141141AY.650.07516
ORF1ab/nsp987Y87YtaTtaC139139AY.30.001383
ORF1ab/nsp987Y87YtaTtaC133133AY.380.0664
ORF1ab/nsp987Y87YtaTtaC125125AY.9.20.004591
ORF1ab/nsp987Y87CtAttGt116116All0.000022
ORF1ab/nsp987Y87YtaTtaC116116AY.550.106422
ORF1ab/nsp987Y87YtaTtaC9999AY.620.043137
ORF1ab/nsp987Y87YtaTtaC9797AY.180.979798
ORF1ab/nsp987Y87YtaTtaC9696AY.75.10.01731
ORF1ab/nsp987Y87YtaTtaC9090AY.170.737705
ORF1ab/nsp987Y87YtaTtaC8888AY.670.040854
ORF1ab/nsp987Y87YtaTtaC7979AY.980.006241
ORF1ab/nsp987Y87FtAttTt7878All0.000015
ORF1ab/nsp987Y87FtAttTt7070AY.40.000109
ORF1ab/nsp987Y87YtaTtaC6262AY.390.001532
ORF1ab/nsp987Y87YtaTtaC6262B0.007924
ORF1ab/nsp987Y87YtaTtaC5454AY.260.001529
ORF1ab/nsp987Y87YtaTtaC5353AY.310.981481
ORF1ab/nsp987Y87YtaTtaC5252AY.560.083467
ORF1ab/nsp987Y87delTAT---5050All0.00001
ORF1ab/nsp987Y87YtaTtaC5050AY.590.026483
ORF1ab/nsp987Y87YtaTtaC4949AY.640.029167
ORF1ab/nsp987Y87YtaTtaC4747AY.470.001462
ORF1ab/nsp987Y87YtaTtaC4646AY.1050.029582
ORF1ab/nsp987Y87YtaTtaC4444AY.100.023317
ORF1ab/nsp987Y87YtaTtaC3939AY.1170.003296
ORF1ab/nsp987Y87YtaTtaC3636AY.460.003747
ORF1ab/nsp987Y87YtaTtaC3636B.1.1.70.000032
ORF1ab/nsp987Y87CtAttGt3535B.1.177.240.045337
ORF1ab/nsp987Y87YtaTtaC3434AY.1030.000211
ORF1ab/nsp987Y87YtaTtaC3333AY.4.2.10.004917
ORF1ab/nsp987Y87YtaTtaC3232AY.610.003353
ORF1ab/nsp987Y87YtaTtaC3131AY.370.009798
ORF1ab/nsp987Y87YtaTtaC3131AY.700.006464
ORF1ab/nsp987Y87YtaTtaC2424AY.860.019917
ORF1ab/nsp987Y87YtaTtaC2323AY.5.40.006364
ORF1ab/nsp987Y87YtaTtaC2222B.1.2140.080586
ORF1ab/nsp987Y87YtaTtaC2020AY.330.001336
ORF1ab/nsp987Y87YtaTtaC1919AY.230.001325
ORF1ab/nsp987Y87YtaTtaC1919AY.450.002312
ORF1ab/nsp987Y87YtaTtaC1818AY.730.011976
ORF1ab/nsp987Y87YtaTtaC1818AY.780.027735
ORF1ab/nsp987Y87HTatCat1717All0.000003
ORF1ab/nsp987Y87YtaTtaC1717AY.350.003962
ORF1ab/nsp987Y87YtaTtaC1717AY.850.007262
ORF1ab/nsp987Y87YtaTtaC1616AY.4.20.000347
ORF1ab/nsp987Y87YtaTtaC1616AY.580.014519
ORF1ab/nsp987Y87del1taTta-1215All0.000002
ORF1ab/nsp987Y87del1TaT-aG215All0
ORF1ab/nsp987Y87del1tAtt-t115All0
ORF1ab/nsp987Y87YtaTtaC1515AY.240.006466
ORF1ab/nsp987Y87YtaTtaC1515AY.280.028355
ORF1ab/nsp987Y87YtaTtaC1515AY.420.000603
ORF1ab/nsp987Y87YtaTtaC1515AY.90.001014
ORF1ab/nsp987Y87CtAttGt1515B.1.1.70.000013
ORF1ab/nsp987Y87YtaTtaC1414AY.1100.001578
ORF1ab/nsp987Y87YtaTtaC1414AY.210.026565
ORF1ab/nsp987Y87YtaTtaC1414AY.250.000084
ORF1ab/nsp987Y87YtaTtaC1414AY.410.004115
ORF1ab/nsp987Y87delTAT---1414B.1.1.70.000013
ORF1ab/nsp987Y87YtaTtaC1414B.1.617.10.001806
ORF1ab/nsp987Y87YtaTtaC1111AY.1020.000292
ORF1ab/nsp987Y87YtaTtaC1111AY.770.012401
ORF1ab/nsp987Y87YtaTtaC1111AY.9.10.000921
ORF1ab/nsp987Y87XtaTtaA710All0.000001
ORF1ab/nsp987Y87XtaTtaG310All0.000001
ORF1ab/nsp987Y87YtaTtaC1010AY.1210.001353
ORF1ab/nsp987Y87YtaTtaC1010AY.40.000016
ORF1ab/nsp987Y87YtaTtaC1010AY.7.10.001127
ORF1ab/nsp987Y87YtaTtaC99AY.1140.00208
ORF1ab/nsp987Y87CtAttGt99AY.40.000014
ORF1ab/nsp987Y87CtAttGt99B.1.617.20.000034
ORF1ab/nsp987Y87YtaTtaC88AY.1060.002679
ORF1ab/nsp987Y87YtaTtaC88AY.46.20.005083
ORF1ab/nsp987Y87YtaTtaC88B.1.4290.000188
ORF1ab/nsp987Y87del1taTta-77AY.160.002658
ORF1ab/nsp987Y87YtaTtaC77AY.200.000272
ORF1ab/nsp987Y87YtaTtaC77AY.39.10.000277
ORF1ab/nsp987Y87YtaTtaC77AY.930.001912
ORF1ab/nsp987Y87YtaTtaC77B.1.20.000062
ORF1ab/nsp987Y87YtaTtaC66AY.1180.000376
ORF1ab/nsp987Y87YtaTtaC66AY.710.00285
ORF1ab/nsp987Y87YtaTtaC66AY.870.004996
ORF1ab/nsp987Y87YtaTtaC66AY.950.004566
ORF1ab/nsp987Y87YtaTtaC66B.1.10.000109
ORF1ab/nsp987Y87YtaTtaC55AY.1190.000177
ORF1ab/nsp987Y87YtaTtaC55AY.7.20.002796
ORF1ab/nsp987Y87YtaTtaC55AY.810.00996
ORF1ab/nsp987Y87YtaTtaC55AY.840.002187
ORF1ab/nsp987Y87HTatCat55B.1.1.70.000004
ORF1ab/nsp987Y87delTAT---55B.1.617.20.000019
ORF1ab/nsp987Y87YtaTtaC44A0.001548
ORF1ab/nsp987Y87StAttCt44All0.000001
ORF1ab/nsp987Y87YtaTtaC44AY.10.001583
ORF1ab/nsp987Y87YtaTtaC44AY.1160.001147
ORF1ab/nsp987Y87YtaTtaC44AY.320.00213
ORF1ab/nsp987Y87YtaTtaC44AY.340.000388
ORF1ab/nsp987Y87delTAT---44AY.40.000006
ORF1ab/nsp987Y87XtaTtaA44AY.80.002424
ORF1ab/nsp987Y87YtaTtaC44AY.880.003537
ORF1ab/nsp987Y87YtaTtaC44AY.99.20.000369
ORF1ab/nsp987Y87YtaTtaC44B.1.177.730.002265
ORF1ab/nsp987Y87DTatGat33All0.000001
ORF1ab/nsp987Y87YtaTtaC33AY.1000.000138
ORF1ab/nsp987Y87YtaTtaC33AY.1040.005952
ORF1ab/nsp987Y87YtaTtaC33AY.1200.000112
ORF1ab/nsp987Y87FtAttTt33AY.30.00003
ORF1ab/nsp987Y87YtaTtaC33AY.3.10.000256
ORF1ab/nsp987Y87CtAttGt33AY.330.0002
ORF1ab/nsp987Y87CtAttGt33AY.390.000074
ORF1ab/nsp987Y87delTAT---33AY.4.50.000322
ORF1ab/nsp987Y87delTAT---33AY.430.000013
ORF1ab/nsp987Y87delTAT---33AY.46.20.001906
ORF1ab/nsp987Y87CtAttGt33AY.470.000093
ORF1ab/nsp987Y87YtaTtaC33AY.660.003209
ORF1ab/nsp987Y87YtaTtaC33AY.720.004082
ORF1ab/nsp987Y87YtaTtaC33AY.920.000862
ORF1ab/nsp987Y87YtaTtaC33AY.98.10.000145
ORF1ab/nsp987Y87YtaTtaC33AY.99.10.004658
ORF1ab/nsp987Y87CtAttGt33B.10.000027
ORF1ab/nsp987Y87YtaTtaC33B.1.1.3260.005282
ORF1ab/nsp987Y87YtaTtaC33B.1.1770.00004
ORF1ab/nsp987Y87YtaTtaC33B.1.3510.000089
ORF1ab/nsp987Y87YtaTtaC33B.1.5760.00272
ORF1ab/nsp987Y87HTatCat33B.1.617.20.000011
ORF1ab/nsp987Y87FtAttTt33B.1.617.20.000011
ORF1ab/nsp987Y87CtAttGt33C.370.000348
ORF1ab/nsp987Y87del2TAt--t22All0
ORF1ab/nsp987Y87NTatAat22All0
ORF1ab/nsp987Y87YtaTtaC22AY.1010.000981
ORF1ab/nsp987Y87CtAttGt22AY.1030.000012
ORF1ab/nsp987Y87YtaTtaC22AY.1090.001479
ORF1ab/nsp987Y87YtaTtaC22AY.1130.000285
ORF1ab/nsp987Y87YtaTtaC22AY.120.000632
ORF1ab/nsp987Y87YtaTtaC22AY.120.20.002571
ORF1ab/nsp987Y87CtAttGt22AY.200.000078
ORF1ab/nsp987Y87YtaTtaC22AY.220.004184
ORF1ab/nsp987Y87YtaTtaC22AY.290.000032
ORF1ab/nsp987Y87CtAttGt22AY.30.00002
ORF1ab/nsp987Y87CtAttGt22AY.340.000194
ORF1ab/nsp987Y87CtAttGt22AY.430.000009
ORF1ab/nsp987Y87CtAttGt22AY.440.000012
ORF1ab/nsp987Y87HTatCat22AY.440.000012
ORF1ab/nsp987Y87YtaTtaC22AY.690.000373
ORF1ab/nsp987Y87YtaTtaC22AY.740.000231
ORF1ab/nsp987Y87YtaTtaC22AY.800.002257
ORF1ab/nsp987Y87YtaTtaC22AY.900.001369
ORF1ab/nsp987Y87YtaTtaC22AY.910.001461
ORF1ab/nsp987Y87CtAttGt22B.1.1.3170.000823
ORF1ab/nsp987Y87CtAttGt22B.1.1770.000026
ORF1ab/nsp987Y87delTAT---22B.1.1770.000026
ORF1ab/nsp987Y87delTAT---22B.1.3110.000549
ORF1ab/nsp987Y87YtaTtaC22B.1.5370.04
ORF1ab/nsp987Y87del1taTta-22B.1.617.20.000008
ORF1ab/nsp987Y87YtaTtaC22D.20.00015
ORF1ab/nsp987Y87CtAttGt11A.2.50.000499
ORF1ab/nsp987Y87RTAtCGt11All0
ORF1ab/nsp987Y87CtAttGt11AY.1000.000046
ORF1ab/nsp987Y87YtaTtaC11AY.1080.001103
ORF1ab/nsp987Y87YtaTtaC11AY.110.001339
ORF1ab/nsp987Y87YtaTtaC11AY.1110.000183
ORF1ab/nsp987Y87YtaTtaC11AY.116.10.000311
ORF1ab/nsp987Y87CtAttGt11AY.1170.000085
ORF1ab/nsp987Y87CtAttGt11AY.1190.000035
ORF1ab/nsp987Y87CtAttGt11AY.1200.000037
ORF1ab/nsp987Y87YtaTtaC11AY.120.10.000321
ORF1ab/nsp987Y87DTatGat11AY.1210.000135
ORF1ab/nsp987Y87XtaTtaA11AY.170.008197
ORF1ab/nsp987Y87CtAttGt11AY.3.10.000085
ORF1ab/nsp987Y87delTAT---11AY.330.000067
ORF1ab/nsp987Y87delTAT---11AY.340.000097
ORF1ab/nsp987Y87YtaTtaC11AY.360.000148
ORF1ab/nsp987Y87HTatCat11AY.40.000002
ORF1ab/nsp987Y87CtAttGt11AY.4.10.000737
ORF1ab/nsp987Y87del1taTta-11AY.4.50.000107
ORF1ab/nsp987Y87delTAT---11AY.440.000006
ORF1ab/nsp987Y87YtaTtaC11AY.46.60.000072
ORF1ab/nsp987Y87YtaTtaC11AY.50.000021
ORF1ab/nsp987Y87DTatGat11AY.50.000021
ORF1ab/nsp987Y87FtAttTt11AY.60.000041
ORF1ab/nsp987Y87delTAT---11AY.60.000041
ORF1ab/nsp987Y87YtaTtaC11AY.600.000938
ORF1ab/nsp987Y87CtAttGt11AY.620.000436
ORF1ab/nsp987Y87YtaTtaC11AY.630.000387
ORF1ab/nsp987Y87del1TaT-aG11AY.670.000464
ORF1ab/nsp987Y87CtAttGt11AY.690.000187
ORF1ab/nsp987Y87delTAT---11AY.70.000196
ORF1ab/nsp987Y87CtAttGt11AY.7.20.000559
ORF1ab/nsp987Y87delTAT---11AY.720.001361
ORF1ab/nsp987Y87CtAttGt11AY.750.000056
ORF1ab/nsp987Y87YtaTtaC11AY.760.004831
ORF1ab/nsp987Y87YtaTtaC11AY.820.001357
ORF1ab/nsp987Y87YtaTtaC11AY.830.001724
ORF1ab/nsp987Y87delTAT---11AY.9.20.000037
ORF1ab/nsp987Y87YtaTtaC11AY.970.001701
ORF1ab/nsp987Y87DTatGat11AY.980.000079
ORF1ab/nsp987Y87HTatCat11B0.000128
ORF1ab/nsp987Y87StAttCt11B.10.000009
ORF1ab/nsp987Y87del1taTta-11B.10.000009
ORF1ab/nsp987Y87HTatCat11B.10.000009
ORF1ab/nsp987Y87XtaTtaG11B.1.10.000018
ORF1ab/nsp987Y87HTatCat11B.1.10.000018
ORF1ab/nsp987Y87delTAT---11B.1.10.000018
ORF1ab/nsp987Y87delTAT---11B.1.1.10.000327
ORF1ab/nsp987Y87CtAttGt11B.1.1.2160.00089
ORF1ab/nsp987Y87delTAT---11B.1.1.3480.000796
ORF1ab/nsp987Y87YtaTtaC11B.1.1.3710.010417
ORF1ab/nsp987Y87YtaTtaC11B.1.1.3720.000689
ORF1ab/nsp987Y87YtaTtaC11B.1.1.5260.003546
ORF1ab/nsp987Y87YtaTtaC11B.1.1.540.003021
ORF1ab/nsp987Y87FtAttTt11B.1.1.70.000001
ORF1ab/nsp987Y87del1TaT-aG11B.1.1.70.000001
ORF1ab/nsp987Y87XtaTtaG11B.1.1.70.000001
ORF1ab/nsp987Y87NTatAat11B.1.1.70.000001
ORF1ab/nsp987Y87YtaTtaC11B.1.1570.002985
ORF1ab/nsp987Y87XtaTtaA11B.1.1770.000013
ORF1ab/nsp987Y87XtaTtaA11B.1.177.320.00135
ORF1ab/nsp987Y87CtAttGt11B.1.177.810.000189
ORF1ab/nsp987Y87delTAT---11B.1.177.830.001481
ORF1ab/nsp987Y87CtAttGt11B.1.177.860.000183
ORF1ab/nsp987Y87del1tAtt-t11B.1.20.000009
ORF1ab/nsp987Y87del2TAt--t11B.1.20.000009
ORF1ab/nsp987Y87CtAttGt11B.1.20.000009
ORF1ab/nsp987Y87XtaTtaG11B.1.20.000009
ORF1ab/nsp987Y87HTatCat11B.1.2210.000071
ORF1ab/nsp987Y87YtaTtaC11B.1.2340.000132
ORF1ab/nsp987Y87YtaTtaC11B.1.2430.00007
ORF1ab/nsp987Y87StAttCt11B.1.2430.00007
ORF1ab/nsp987Y87YtaTtaC11B.1.2580.000067
ORF1ab/nsp987Y87del1taTta-11B.1.2580.000067
ORF1ab/nsp987Y87YtaTtaC11B.1.4590.004082
ORF1ab/nsp987Y87StAttCt11B.1.4620.007246
ORF1ab/nsp987Y87YtaTtaC11B.1.4620.007246
ORF1ab/nsp987Y87YtaTtaC11B.1.5170.000427
ORF1ab/nsp987Y87RTAtCGt11B.1.5250.000113
ORF1ab/nsp987Y87YtaTtaC11B.1.5260.000024
ORF1ab/nsp987Y87YtaTtaC11B.1.5300.007143
ORF1ab/nsp987Y87YtaTtaC11B.1.5360.02381
ORF1ab/nsp987Y87del2TAt--t11B.1.5820.000491
ORF1ab/nsp987Y87YtaTtaC11B.1.5950.000261
ORF1ab/nsp987Y87YtaTtaC11B.1.5960.000087
ORF1ab/nsp987Y87CtAttGt11B.1.6090.000479
ORF1ab/nsp987Y87YtaTtaC11B.1.6210.000089
ORF1ab/nsp987Y87YtaTtaC11B.1.621.10.000506
ORF1ab/nsp987Y87StAttCt11B.1.6320.006711
ORF1ab/nsp987Y87NTatAat11B.1.6370.000073
ORF1ab/nsp987Y87delTAT---11B.340.013699
ORF1ab/nsp987Y87HTatCat11D.20.000075
ORF1ab/nsp987Y87delTAT---11N.40.004255
ORF1ab/nsp987Y87YtaTtaC11P.10.000016
ORF1ab/nsp987Y87CtAttGt11P.10.000016
ORF1ab/nsp987Y87HTatCat11P.10.000016
ORF1ab/nsp987Y87YtaTtaC11P.1.170.000162
ORF1ab/nsp987Y87delTAT---11U.30.003861