CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 77 | T77I | T4217I | nonsyn | aCa | aTa | 1478 | 1478 | 1 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77T | T4217T | syn | acA | acG | 363 | 335 | 0.922865 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77T | T4217T | syn | acA | acT | 363 | 17 | 0.046832 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77T | T4217T | syn | acA | acC | 363 | 11 | 0.030303 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77del | T4217del | del | ACA | --- | 48 | 48 | 1 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77A | T4217A | nonsyn | Aca | Gca | 44 | 44 | 1 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77del1 | T4217del1 | del | acA | ac- | 6 | 4 | 0.666667 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77del1 | T4217del1 | del | Aca | -ca | 6 | 1 | 0.166667 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77del1 | T4217del1 | del | ACa | -Ta | 6 | 1 | 0.166667 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77K | T4217K | nonsyn | aCa | aAa | 3 | 3 | 1 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77S | T4217S | nonsyn | Aca | Tca | 3 | 3 | 1 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77P | T4217P | nonsyn | Aca | Cca | 3 | 3 | 1 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77V | T4217V | nonsyn | ACa | GTa | 1 | 1 | 1 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77X | T4217X | nonsyn | ACa | TAa | 1 | 1 | 1 | 12914-12916 |
ORF1ab/nsp9 | 77 | T77R | T4217R | nonsyn | aCa | aGa | 1 | 1 | 1 | 12914-12916 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1478 | 1478 | All | 0.000283 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 335 | 363 | All | 0.000064 |
ORF1ab/nsp9 | 77 | T77T | acA | acT | 17 | 363 | All | 0.000003 |
ORF1ab/nsp9 | 77 | T77T | acA | acC | 11 | 363 | All | 0.000002 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 250 | 250 | B.1.1.7 | 0.000224 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 175 | 175 | AY.43 | 0.000775 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 123 | 129 | B.1.1.7 | 0.00011 |
ORF1ab/nsp9 | 77 | T77T | acA | acC | 6 | 129 | B.1.1.7 | 0.000005 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 84 | 87 | AY.4 | 0.000131 |
ORF1ab/nsp9 | 77 | T77T | acA | acT | 2 | 87 | AY.4 | 0.000003 |
ORF1ab/nsp9 | 77 | T77T | acA | acC | 1 | 87 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 81 | 81 | B.1.160 | 0.002526 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 80 | 80 | AY.90 | 0.054757 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 70 | 70 | AY.4 | 0.000109 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 68 | 68 | B.1 | 0.000623 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 63 | 63 | B.1.225 | 0.969231 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 62 | 62 | B.1.617.2 | 0.000233 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 52 | 52 | AY.39 | 0.001285 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 48 | 48 | All | 0.000009 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 44 | 44 | All | 0.000008 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 42 | 42 | AY.3 | 0.000418 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 30 | 30 | B.1.396 | 0.021171 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 22 | 22 | AY.103 | 0.000137 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 21 | 21 | AY.4.2 | 0.000455 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 21 | 21 | B.1.232 | 0.011284 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 21 | 21 | P.1 | 0.000331 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 19 | 19 | AY.75 | 0.001064 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 17 | 17 | AY.120 | 0.000632 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 16 | 16 | B.1.526 | 0.000376 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 15 | 15 | B.1.1.189 | 0.022693 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 14 | 14 | AY.7.1 | 0.001578 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 14 | 14 | B.1.258.17 | 0.001456 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 13 | 13 | P.2 | 0.002426 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 11 | 11 | AY.16 | 0.004176 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 11 | 11 | AY.99.2 | 0.001014 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 7 | 8 | B.1.617.2 | 0.000026 |
ORF1ab/nsp9 | 77 | T77T | acA | acC | 1 | 8 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 7 | 7 | AY.3.1 | 0.000597 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 7 | 7 | AY.68 | 0.001916 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 7 | 7 | AY.95 | 0.005327 |
ORF1ab/nsp9 | 77 | T77del1 | acA | ac- | 4 | 6 | All | 0.000001 |
ORF1ab/nsp9 | 77 | T77del1 | Aca | -ca | 1 | 6 | All | 0 |
ORF1ab/nsp9 | 77 | T77del1 | ACa | -Ta | 1 | 6 | All | 0 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 6 | 6 | AY.23.1 | 0.002504 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp9 | 77 | T77T | acA | acT | 5 | 6 | AY.4.2 | 0.000108 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 1 | 6 | AY.4.2 | 0.000022 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 6 | 6 | P.1.7 | 0.001916 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp9 | 77 | T77T | acA | acT | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp9 | 77 | T77K | aCa | aAa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp9 | 77 | T77S | Aca | Tca | 3 | 3 | All | 0.000001 |
ORF1ab/nsp9 | 77 | T77P | Aca | Cca | 3 | 3 | All | 0.000001 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 3 | 3 | AY.90 | 0.002053 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 3 | 3 | B.1.1.152 | 0.12 |
ORF1ab/nsp9 | 77 | T77T | acA | acT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 3 | 3 | B.1.177.43 | 0.004431 |
ORF1ab/nsp9 | 77 | T77T | acA | acT | 3 | 3 | B.1.359 | 0.068182 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp9 | 77 | T77del1 | acA | ac- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp9 | 77 | T77T | acA | acT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp9 | 77 | T77S | Aca | Tca | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.35 | 0.016949 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | D.5 | 0.00995 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp9 | 77 | T77S | Aca | Tca | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp9 | 77 | T77P | Aca | Cca | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp9 | 77 | T77R | aCa | aGa | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 77 | T77X | ACa | TAa | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 77 | T77V | ACa | GTa | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp9 | 77 | T77K | aCa | aAa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp9 | 77 | T77T | acA | acT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp9 | 77 | T77del1 | acA | ac- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp9 | 77 | T77P | Aca | Cca | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp9 | 77 | T77del1 | ACa | -Ta | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 77 | T77T | acA | acC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 77 | T77K | aCa | aAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 77 | T77X | ACa | TAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.123 | 0.017857 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp9 | 77 | T77T | acA | acC | 1 | 1 | B.1.1.421 | 0.030303 |
ORF1ab/nsp9 | 77 | T77R | aCa | aGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 77 | T77V | ACa | GTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 77 | T77K | aCa | aAa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.1.82 | 0.038462 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp9 | 77 | T77del1 | acA | ac- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp9 | 77 | T77del1 | Aca | -ca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp9 | 77 | T77A | Aca | Gca | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp9 | 77 | T77P | Aca | Cca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp9 | 77 | T77T | acA | acC | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp9 | 77 | T77T | acA | acG | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp9 | 77 | T77I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp9 | 77 | T77del | ACA | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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