CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 66

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp966Y66YY4206YsyntaTtaC501501112881-12883
ORF1ab/nsp966Y66HY4206HnonsynTatCat149149112881-12883
ORF1ab/nsp966Y66delY4206deldelTAT---5252112881-12883
ORF1ab/nsp966Y66CY4206CnonsyntAttGt1616112881-12883
ORF1ab/nsp966Y66SY4206SnonsyntAttCt980.88888912881-12883
ORF1ab/nsp966Y66SY4206SnonsynTAtAGt910.11111112881-12883
ORF1ab/nsp966Y66FY4206FnonsyntAttTt55112881-12883
ORF1ab/nsp966Y66XY4206XnonsyntaTtaA540.812881-12883
ORF1ab/nsp966Y66XY4206XnonsyntATtGA510.212881-12883
ORF1ab/nsp966Y66NY4206NnonsynTatAat33112881-12883
ORF1ab/nsp966Y66GY4206GnonsynTATGGA320.66666712881-12883
ORF1ab/nsp966Y66GY4206GnonsynTAtGGt310.33333312881-12883
ORF1ab/nsp966Y66del1Y4206del1delTat-at22112881-12883
ORF1ab/nsp966Y66EY4206EnonsynTaTGaA22112881-12883
ORF1ab/nsp966Y66del2Y4206del2delTAt--t210.512881-12883
ORF1ab/nsp966Y66del2Y4206del2deltATt--210.512881-12883
ORF1ab/nsp966Y66DY4206DnonsynTatGat11112881-12883

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp966Y66YtaTtaC501501All0.000096
ORF1ab/nsp966Y66HTatCat149149All0.000028
ORF1ab/nsp966Y66YtaTtaC7272B.1.5790.808989
ORF1ab/nsp966Y66delTAT---5252All0.00001
ORF1ab/nsp966Y66YtaTtaC3838B.1.617.20.000143
ORF1ab/nsp966Y66YtaTtaC3737AY.580.033575
ORF1ab/nsp966Y66YtaTtaC3535B.1.1.70.000031
ORF1ab/nsp966Y66HTatCat3131B.1.1.280.009648
ORF1ab/nsp966Y66YtaTtaC2929AY.40.000045
ORF1ab/nsp966Y66HTatCat2525AY.40.000039
ORF1ab/nsp966Y66delTAT---2121B.1.1.70.000019
ORF1ab/nsp966Y66YtaTtaC2020AY.1030.000124
ORF1ab/nsp966Y66YtaTtaC1919B.1.5960.001656
ORF1ab/nsp966Y66HTatCat1818AY.1030.000112
ORF1ab/nsp966Y66HTatCat1818B.1.1.70.000016
ORF1ab/nsp966Y66YtaTtaC1717AY.430.000075
ORF1ab/nsp966Y66CtAttGt1616All0.000003
ORF1ab/nsp966Y66YtaTtaC1616B.1.2340.002111
ORF1ab/nsp966Y66YtaTtaC1515B.10.000137
ORF1ab/nsp966Y66YtaTtaC1212B.1.4290.000282
ORF1ab/nsp966Y66HTatCat1212B.1.617.20.000045
ORF1ab/nsp966Y66YtaTtaC1111B.1.177.20.05
ORF1ab/nsp966Y66YtaTtaC1111P.10.000173
ORF1ab/nsp966Y66HTatCat1010AY.440.000061
ORF1ab/nsp966Y66YtaTtaC1010D.20.00075
ORF1ab/nsp966Y66StAttCt89All0.000002
ORF1ab/nsp966Y66STAtAGt19All0
ORF1ab/nsp966Y66YtaTtaC99AY.290.000142
ORF1ab/nsp966Y66CtAttGt99B.1.1.70.000008
ORF1ab/nsp966Y66YtaTtaC88B.1.617.10.001032
ORF1ab/nsp966Y66YtaTtaC77AY.250.000042
ORF1ab/nsp966Y66YtaTtaC77B.1.2210.000497
ORF1ab/nsp966Y66YtaTtaC66AY.1020.000159
ORF1ab/nsp966Y66YtaTtaC66AY.30.00006
ORF1ab/nsp966Y66HTatCat66B.1.1.2220.001224
ORF1ab/nsp966Y66YtaTtaC55A.10.001409
ORF1ab/nsp966Y66FtAttTt55All0.000001
ORF1ab/nsp966Y66XtaTtaA45All0.000001
ORF1ab/nsp966Y66XtATtGA15All0
ORF1ab/nsp966Y66YtaTtaC55AY.1190.000177
ORF1ab/nsp966Y66delTAT---55AY.40.000008
ORF1ab/nsp966Y66YtaTtaC55AY.50.000103
ORF1ab/nsp966Y66HTatCat55B.1.36.290.002587
ORF1ab/nsp966Y66YtaTtaC44AY.420.000161
ORF1ab/nsp966Y66YtaTtaC44B.1.10.000073
ORF1ab/nsp966Y66delTAT---44B.1.1770.000053
ORF1ab/nsp966Y66YtaTtaC44B.1.1770.000053
ORF1ab/nsp966Y66YtaTtaC44B.1.20.000035
ORF1ab/nsp966Y66YtaTtaC44B.1.36.180.001681
ORF1ab/nsp966Y66YtaTtaC44B.1.5260.000094
ORF1ab/nsp966Y66YtaTtaC44Q.70.004444
ORF1ab/nsp966Y66NTatAat33All0.000001
ORF1ab/nsp966Y66GTATGGA23All0
ORF1ab/nsp966Y66GTAtGGt13All0
ORF1ab/nsp966Y66YtaTtaC33AY.1210.000406
ORF1ab/nsp966Y66NTatAat33AY.250.000018
ORF1ab/nsp966Y66YtaTtaC33AY.260.000085
ORF1ab/nsp966Y66YtaTtaC33AY.390.000074
ORF1ab/nsp966Y66YtaTtaC33AY.540.000286
ORF1ab/nsp966Y66YtaTtaC33AY.690.00056
ORF1ab/nsp966Y66YtaTtaC33B.1.1.3060.001315
ORF1ab/nsp966Y66FtAttTt33B.1.1.70.000003
ORF1ab/nsp966Y66StAttCt33B.1.1.70.000003
ORF1ab/nsp966Y66YtaTtaC33B.1.360.000438
ORF1ab/nsp966Y66YtaTtaC33B.1.4740.005703
ORF1ab/nsp966Y66HTatCat33P.10.000047
ORF1ab/nsp966Y66ETaTGaA22All0
ORF1ab/nsp966Y66del1Tat-at22All0
ORF1ab/nsp966Y66del2tATt--12All0
ORF1ab/nsp966Y66del2TAt--t12All0
ORF1ab/nsp966Y66YtaTtaC22AY.1080.002205
ORF1ab/nsp966Y66YtaTtaC22AY.130.000322
ORF1ab/nsp966Y66HTatCat22AY.250.000012
ORF1ab/nsp966Y66HTatCat22AY.330.000134
ORF1ab/nsp966Y66YtaTtaC22AY.360.000296
ORF1ab/nsp966Y66HTatCat22AY.390.000049
ORF1ab/nsp966Y66YtaTtaC22AY.4.2.10.000298
ORF1ab/nsp966Y66delTAT---22AY.4.50.000215
ORF1ab/nsp966Y66HTatCat22AY.430.000009
ORF1ab/nsp966Y66delTAT---22AY.430.000009
ORF1ab/nsp966Y66YtaTtaC22AY.440.000012
ORF1ab/nsp966Y66YtaTtaC22AY.460.000208
ORF1ab/nsp966Y66YtaTtaC22AY.46.50.000397
ORF1ab/nsp966Y66YtaTtaC22B.1.1.3410.117647
ORF1ab/nsp966Y66YtaTtaC22B.1.1600.000062
ORF1ab/nsp966Y66YtaTtaC22B.1.177.40.000422
ORF1ab/nsp966Y66delTAT---22B.1.3110.000549
ORF1ab/nsp966Y66YtaTtaC22B.1.3690.00057
ORF1ab/nsp966Y66YtaTtaC22B.1.466.20.000782
ORF1ab/nsp966Y66StAttCt22B.1.5250.000226
ORF1ab/nsp966Y66delTAT---22B.1.617.20.000008
ORF1ab/nsp966Y66XtATtGA12P.10.000016
ORF1ab/nsp966Y66XtaTtaA12P.10.000016
ORF1ab/nsp966Y66GTAtGGt12P.10.000016
ORF1ab/nsp966Y66GTATGGA12P.10.000016
ORF1ab/nsp966Y66DTatGat11All0
ORF1ab/nsp966Y66YtaTtaC11AY.1000.000046
ORF1ab/nsp966Y66HTatCat11AY.1000.000046
ORF1ab/nsp966Y66STAtAGt11AY.1030.000006
ORF1ab/nsp966Y66YtaTtaC11AY.1170.000085
ORF1ab/nsp966Y66HTatCat11AY.1190.000035
ORF1ab/nsp966Y66YtaTtaC11AY.200.000039
ORF1ab/nsp966Y66CtAttGt11AY.230.00007
ORF1ab/nsp966Y66delTAT---11AY.340.000097
ORF1ab/nsp966Y66CtAttGt11AY.40.000002
ORF1ab/nsp966Y66XtaTtaA11AY.40.000002
ORF1ab/nsp966Y66FtAttTt11AY.40.000002
ORF1ab/nsp966Y66StAttCt11AY.40.000002
ORF1ab/nsp966Y66YtaTtaC11AY.4.50.000107
ORF1ab/nsp966Y66FtAttTt11AY.430.000004
ORF1ab/nsp966Y66del2TAt--t11AY.430.000004
ORF1ab/nsp966Y66CtAttGt11AY.440.000006
ORF1ab/nsp966Y66delTAT---11AY.440.000006
ORF1ab/nsp966Y66YtaTtaC11AY.450.000122
ORF1ab/nsp966Y66delTAT---11AY.46.20.000635
ORF1ab/nsp966Y66HTatCat11AY.46.60.000072
ORF1ab/nsp966Y66delTAT---11AY.5.30.000337
ORF1ab/nsp966Y66HTatCat11AY.610.000105
ORF1ab/nsp966Y66YtaTtaC11AY.610.000105
ORF1ab/nsp966Y66YtaTtaC11AY.710.000475
ORF1ab/nsp966Y66delTAT---11AY.720.001361
ORF1ab/nsp966Y66CtAttGt11AY.80.000606
ORF1ab/nsp966Y66ETaTGaA11AY.850.000427
ORF1ab/nsp966Y66StAttCt11AY.850.000427
ORF1ab/nsp966Y66GTATGGA11AY.850.000427
ORF1ab/nsp966Y66YtaTtaC11AY.90.000068
ORF1ab/nsp966Y66delTAT---11AY.9.20.000037
ORF1ab/nsp966Y66YtaTtaC11AZ.10.000867
ORF1ab/nsp966Y66HTatCat11B.10.000009
ORF1ab/nsp966Y66YtaTtaC11B.1.1.10.000327
ORF1ab/nsp966Y66delTAT---11B.1.1.10.000327
ORF1ab/nsp966Y66YtaTtaC11B.1.1.1290.009174
ORF1ab/nsp966Y66YtaTtaC11B.1.1.280.000311
ORF1ab/nsp966Y66YtaTtaC11B.1.1.2910.000742
ORF1ab/nsp966Y66YtaTtaC11B.1.1.3260.001761
ORF1ab/nsp966Y66YtaTtaC11B.1.1.330.000421
ORF1ab/nsp966Y66delTAT---11B.1.1.3480.000796
ORF1ab/nsp966Y66XtaTtaA11B.1.1.390.00051
ORF1ab/nsp966Y66YtaTtaC11B.1.1.4340.000349
ORF1ab/nsp966Y66del1Tat-at11B.1.1.70.000001
ORF1ab/nsp966Y66StAttCt11B.1.1390.000733
ORF1ab/nsp966Y66YtaTtaC11B.1.1620.005025
ORF1ab/nsp966Y66XtaTtaA11B.1.1770.000013
ORF1ab/nsp966Y66HTatCat11B.1.1770.000013
ORF1ab/nsp966Y66delTAT---11B.1.177.110.001698
ORF1ab/nsp966Y66YtaTtaC11B.1.177.570.000281
ORF1ab/nsp966Y66delTAT---11B.1.177.600.000218
ORF1ab/nsp966Y66HTatCat11B.1.177.830.001481
ORF1ab/nsp966Y66delTAT---11B.1.177.830.001481
ORF1ab/nsp966Y66HTatCat11B.1.20.000009
ORF1ab/nsp966Y66HTatCat11B.1.2340.000132
ORF1ab/nsp966Y66HTatCat11B.1.2580.000067
ORF1ab/nsp966Y66YtaTtaC11B.1.2580.000067
ORF1ab/nsp966Y66HTatCat11B.1.258.170.000104
ORF1ab/nsp966Y66YtaTtaC11B.1.258.170.000104
ORF1ab/nsp966Y66del1Tat-at11B.1.258.30.001675
ORF1ab/nsp966Y66YtaTtaC11B.1.3510.00003
ORF1ab/nsp966Y66delTAT---11B.1.3890.001002
ORF1ab/nsp966Y66YtaTtaC11B.1.4270.00005
ORF1ab/nsp966Y66YtaTtaC11B.1.4980.020408
ORF1ab/nsp966Y66YtaTtaC11B.1.5160.001957
ORF1ab/nsp966Y66delTAT---11B.1.5250.000113
ORF1ab/nsp966Y66HTatCat11B.1.5870.001898
ORF1ab/nsp966Y66CtAttGt11B.1.6370.000073
ORF1ab/nsp966Y66HTatCat11D.20.000075
ORF1ab/nsp966Y66delTAT---11N.40.004255
ORF1ab/nsp966Y66CtAttGt11P.10.000016
ORF1ab/nsp966Y66DTatGat11P.10.000016
ORF1ab/nsp966Y66ETaTGaA11P.10.000016
ORF1ab/nsp966Y66CtAttGt11P.1.160.000374
ORF1ab/nsp966Y66YtaTtaC11Q.10.000126
ORF1ab/nsp966Y66del2tATt--11U.30.003861