CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 55

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp955R55RR4195RsynagAagG337130220.8964712848-12850
ORF1ab/nsp955R55RR4195RsynAgaCga33713490.1035312848-12850
ORF1ab/nsp955R55KR4195KnonsynaGaaAa9393112848-12850
ORF1ab/nsp955R55delR4195deldelAGA---5050112848-12850
ORF1ab/nsp955R55IR4195InonsynaGaaTa2828112848-12850
ORF1ab/nsp955R55GR4195GnonsynAgaGga1010112848-12850
ORF1ab/nsp955R55TR4195TnonsynaGaaCa66112848-12850
ORF1ab/nsp955R55SR4195SnonsynagAagT650.83333312848-12850
ORF1ab/nsp955R55SR4195SnonsynagAagC610.16666712848-12850
ORF1ab/nsp955R55XR4195XnonsynAgaTga22112848-12850
ORF1ab/nsp955R55del2R4195del2delAGa--a210.512848-12850
ORF1ab/nsp955R55del2R4195del2delaGAa--210.512848-12850
ORF1ab/nsp955R55del1R4195del1delAGAGA-210.512848-12850
ORF1ab/nsp955R55del1R4195del1delaGaa-a210.512848-12850

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp955R55RagAagG30223371All0.000578
ORF1ab/nsp955R55RAgaCga3493371All0.000067
ORF1ab/nsp955R55RagAagG22862286B.1.5170.976089
ORF1ab/nsp955R55RAgaCga339440AY.40.000528
ORF1ab/nsp955R55RagAagG101440AY.40.000157
ORF1ab/nsp955R55RagAagG190190B.1.517.11
ORF1ab/nsp955R55RagAagG124125B.1.1.70.000111
ORF1ab/nsp955R55RAgaCga1125B.1.1.70.000001
ORF1ab/nsp955R55KaGaaAa9393All0.000018
ORF1ab/nsp955R55delAGA---5050All0.00001
ORF1ab/nsp955R55RagAagG5050AY.46.50.009921
ORF1ab/nsp955R55RagAagG4545B.10.000412
ORF1ab/nsp955R55IaGaaTa2828All0.000005
ORF1ab/nsp955R55KaGaaAa2525B.1.617.20.000094
ORF1ab/nsp955R55delAGA---1919B.1.1.70.000017
ORF1ab/nsp955R55RagAagG1419B.1.617.20.000053
ORF1ab/nsp955R55RAgaCga519B.1.617.20.000019
ORF1ab/nsp955R55RagAagG1616B.1.4290.000376
ORF1ab/nsp955R55KaGaaAa1212AY.1030.000075
ORF1ab/nsp955R55KaGaaAa1212AY.40.000019
ORF1ab/nsp955R55RagAagG1112AY.430.000049
ORF1ab/nsp955R55RAgaCga112AY.430.000004
ORF1ab/nsp955R55RagAagG1212B.1.3510.000357
ORF1ab/nsp955R55RagAagG1111B.1.20.000097
ORF1ab/nsp955R55GAgaGga1010All0.000002
ORF1ab/nsp955R55RagAagG1010AY.440.000061
ORF1ab/nsp955R55RagAagG99B.1.5260.000212
ORF1ab/nsp955R55IaGaaTa99P.10.000142
ORF1ab/nsp955R55RagAagG77AY.250.000042
ORF1ab/nsp955R55RagAagG77B.1.5770.004811
ORF1ab/nsp955R55RagAagG77P.1.150.001626
ORF1ab/nsp955R55TaGaaCa66All0.000001
ORF1ab/nsp955R55SagAagT56All0.000001
ORF1ab/nsp955R55SagAagC16All0
ORF1ab/nsp955R55RagAagG66AY.1030.000037
ORF1ab/nsp955R55IaGaaTa66B.1.1.70.000005
ORF1ab/nsp955R55RagAagG66B.1.4730.115385
ORF1ab/nsp955R55RagAagG66P.1.140.000287
ORF1ab/nsp955R55RagAagG66P.1.170.000971
ORF1ab/nsp955R55RagAagG55B.1.10.000091
ORF1ab/nsp955R55KaGaaAa55B.1.1.70.000004
ORF1ab/nsp955R55RagAagG44AY.4.50.00043
ORF1ab/nsp955R55RagAagG44B.1.1.5190.000159
ORF1ab/nsp955R55delAGA---44B.1.1770.000053
ORF1ab/nsp955R55KaGaaAa44B.1.258.170.000416
ORF1ab/nsp955R55RagAagG33A.210.00831
ORF1ab/nsp955R55KaGaaAa33AY.250.000018
ORF1ab/nsp955R55RagAagG33AY.30.00003
ORF1ab/nsp955R55delAGA---33AY.40.000005
ORF1ab/nsp955R55KaGaaAa33AY.440.000018
ORF1ab/nsp955R55IaGaaTa33B.10.000027
ORF1ab/nsp955R55KaGaaAa33B.10.000027
ORF1ab/nsp955R55RagAagG33B.1.1.3060.001315
ORF1ab/nsp955R55RagAagG33B.1.1.3180.000905
ORF1ab/nsp955R55RagAagG33B.1.1770.00004
ORF1ab/nsp955R55KaGaaAa33B.1.4000.001287
ORF1ab/nsp955R55RagAagG33B.1.6370.000219
ORF1ab/nsp955R55RagAagG33Q.80.000495
ORF1ab/nsp955R55XAgaTga22All0
ORF1ab/nsp955R55del1AGAGA-12All0
ORF1ab/nsp955R55del1aGaa-a12All0
ORF1ab/nsp955R55del2AGa--a12All0
ORF1ab/nsp955R55del2aGAa--12All0
ORF1ab/nsp955R55GAgaGga22AY.1010.000981
ORF1ab/nsp955R55KaGaaAa22AY.260.000057
ORF1ab/nsp955R55IaGaaTa22AY.40.000003
ORF1ab/nsp955R55delAGA---22AY.4.50.000215
ORF1ab/nsp955R55RagAagG22AY.420.00008
ORF1ab/nsp955R55delAGA---22AY.430.000009
ORF1ab/nsp955R55RAgaCga12AY.540.000095
ORF1ab/nsp955R55RagAagG12AY.540.000095
ORF1ab/nsp955R55RagAagG22AY.730.001331
ORF1ab/nsp955R55RagAagG22AY.740.000231
ORF1ab/nsp955R55KaGaaAa22B.1.10.000036
ORF1ab/nsp955R55RagAagG22B.1.1.2690.002706
ORF1ab/nsp955R55RAgaCga22B.1.1.3980.006452
ORF1ab/nsp955R55RagAagG22B.1.1.5230.003125
ORF1ab/nsp955R55TaGaaCa22B.1.1.70.000002
ORF1ab/nsp955R55GAgaGga22B.1.1.70.000002
ORF1ab/nsp955R55RagAagG22B.1.1600.000062
ORF1ab/nsp955R55GAgaGga22B.1.1600.000062
ORF1ab/nsp955R55GAgaGga22B.1.1770.000026
ORF1ab/nsp955R55RagAagG22B.1.2210.000142
ORF1ab/nsp955R55IaGaaTa22B.1.5960.000174
ORF1ab/nsp955R55RagAagG22B.1.6210.000177
ORF1ab/nsp955R55KaGaaAa22B.100.016529
ORF1ab/nsp955R55SagAagT22D.20.00015
ORF1ab/nsp955R55RagAagG22P.10.000032
ORF1ab/nsp955R55IaGaaTa11A0.000387
ORF1ab/nsp955R55KaGaaAa11A0.000387
ORF1ab/nsp955R55RagAagG11A.23.10.000704
ORF1ab/nsp955R55KaGaaAa11AE.80.000489
ORF1ab/nsp955R55RagAagG11AY.1000.000046
ORF1ab/nsp955R55RagAagG11AY.1020.000027
ORF1ab/nsp955R55delAGA---11AY.1030.000006
ORF1ab/nsp955R55RagAagG11AY.1200.000037
ORF1ab/nsp955R55RagAagG11AY.120.2.10.000498
ORF1ab/nsp955R55RagAagG11AY.160.00038
ORF1ab/nsp955R55RagAagG11AY.230.00007
ORF1ab/nsp955R55KaGaaAa11AY.230.00007
ORF1ab/nsp955R55RagAagG11AY.260.000028
ORF1ab/nsp955R55RagAagG11AY.270.000065
ORF1ab/nsp955R55KaGaaAa11AY.270.000065
ORF1ab/nsp955R55RagAagG11AY.320.000532
ORF1ab/nsp955R55RagAagG11AY.330.000067
ORF1ab/nsp955R55TaGaaCa11AY.340.000097
ORF1ab/nsp955R55delAGA---11AY.340.000097
ORF1ab/nsp955R55TaGaaCa11AY.390.000025
ORF1ab/nsp955R55TaGaaCa11AY.40.000002
ORF1ab/nsp955R55XAgaTga11AY.420.00004
ORF1ab/nsp955R55del1aGaa-a11AY.430.000004
ORF1ab/nsp955R55del2aGAa--11AY.430.000004
ORF1ab/nsp955R55KaGaaAa11AY.460.000104
ORF1ab/nsp955R55SagAagC11AY.460.000104
ORF1ab/nsp955R55RagAagG11AY.46.60.000072
ORF1ab/nsp955R55RagAagG11AY.470.000031
ORF1ab/nsp955R55RagAagG11AY.50.000021
ORF1ab/nsp955R55SagAagT11AY.50.000021
ORF1ab/nsp955R55delAGA---11AY.5.30.000337
ORF1ab/nsp955R55RagAagG11AY.570.000656
ORF1ab/nsp955R55RagAagG11AY.610.000105
ORF1ab/nsp955R55RagAagG11AY.640.000595
ORF1ab/nsp955R55del1AGAGA-11AY.670.000464
ORF1ab/nsp955R55RagAagG11AY.680.000274
ORF1ab/nsp955R55RagAagG11AY.7.10.000113
ORF1ab/nsp955R55delAGA---11AY.720.001361
ORF1ab/nsp955R55RagAagG11AY.750.000056
ORF1ab/nsp955R55RagAagG11AY.75.10.00018
ORF1ab/nsp955R55KaGaaAa11AY.90.000068
ORF1ab/nsp955R55RagAagG11AY.9.20.000037
ORF1ab/nsp955R55delAGA---11B.10.000009
ORF1ab/nsp955R55IaGaaTa11B.1.10.000018
ORF1ab/nsp955R55delAGA---11B.1.1.10.000327
ORF1ab/nsp955R55KaGaaAa11B.1.1.1220.045455
ORF1ab/nsp955R55GAgaGga11B.1.1.2140.000055
ORF1ab/nsp955R55RagAagG11B.1.1.2160.00089
ORF1ab/nsp955R55RagAagG11B.1.1.2980.000862
ORF1ab/nsp955R55RagAagG11B.1.1.3090.005848
ORF1ab/nsp955R55RagAagG11B.1.1.3280.016949
ORF1ab/nsp955R55RagAagG11B.1.1.330.000421
ORF1ab/nsp955R55delAGA---11B.1.1.3480.000796
ORF1ab/nsp955R55del2AGa--a11B.1.1.70.000001
ORF1ab/nsp955R55delAGA---11B.1.1600.000031
ORF1ab/nsp955R55KaGaaAa11B.1.1770.000013
ORF1ab/nsp955R55delAGA---11B.1.177.110.001698
ORF1ab/nsp955R55delAGA---11B.1.177.150.000631
ORF1ab/nsp955R55delAGA---11B.1.177.40.000211
ORF1ab/nsp955R55RagAagG11B.1.177.40.000211
ORF1ab/nsp955R55delAGA---11B.1.177.600.000218
ORF1ab/nsp955R55RagAagG11B.1.177.730.000566
ORF1ab/nsp955R55delAGA---11B.1.177.810.000189
ORF1ab/nsp955R55delAGA---11B.1.177.830.001481
ORF1ab/nsp955R55IaGaaTa11B.1.20.000009
ORF1ab/nsp955R55KaGaaAa11B.1.20.000009
ORF1ab/nsp955R55SagAagT11B.1.20.000009
ORF1ab/nsp955R55RagAagG11B.1.2580.000067
ORF1ab/nsp955R55delAGA---11B.1.258.30.001675
ORF1ab/nsp955R55delAGA---11B.1.3110.000275
ORF1ab/nsp955R55RagAagG11B.1.3240.001605
ORF1ab/nsp955R55TaGaaCa11B.1.3510.00003
ORF1ab/nsp955R55RagAagG11B.1.360.000146
ORF1ab/nsp955R55KaGaaAa11B.1.36.10.00114
ORF1ab/nsp955R55RagAagG11B.1.3690.000285
ORF1ab/nsp955R55RagAagG11B.1.3750.00082
ORF1ab/nsp955R55RagAagG11B.1.3960.000706
ORF1ab/nsp955R55IaGaaTa11B.1.4130.004255
ORF1ab/nsp955R55KaGaaAa11B.1.416.10.001563
ORF1ab/nsp955R55XAgaTga11B.1.4290.000024
ORF1ab/nsp955R55KaGaaAa11B.1.4290.000024
ORF1ab/nsp955R55IaGaaTa11B.1.4290.000024
ORF1ab/nsp955R55KaGaaAa11B.1.5090.000866
ORF1ab/nsp955R55delAGA---11B.1.5250.000113
ORF1ab/nsp955R55KaGaaAa11B.1.5260.000024
ORF1ab/nsp955R55RagAagG11B.1.5800.004065
ORF1ab/nsp955R55RagAagG11B.1.617.10.000129
ORF1ab/nsp955R55GAgaGga11B.1.617.20.000004
ORF1ab/nsp955R55RagAagG11B.1.6340.003425
ORF1ab/nsp955R55KaGaaAa11B.1.6370.000073
ORF1ab/nsp955R55RagAagG11B.200.023256
ORF1ab/nsp955R55KaGaaAa11B.400.000364
ORF1ab/nsp955R55IaGaaTa11B.60.00091
ORF1ab/nsp955R55RagAagG11C.30.007634
ORF1ab/nsp955R55RagAagG11C.370.000116
ORF1ab/nsp955R55delAGA---11D.20.000075
ORF1ab/nsp955R55delAGA---11N.40.004255
ORF1ab/nsp955R55KaGaaAa11P.10.000016
ORF1ab/nsp955R55RagAagG11P.1.120.000484
ORF1ab/nsp955R55RagAagG11P.30.001595
ORF1ab/nsp955R55RagAagG11Q.10.000126
ORF1ab/nsp955R55RagAagG11Q.40.000455
ORF1ab/nsp955R55SagAagT11R.10.00009
ORF1ab/nsp955R55delAGA---11U.30.003861