CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 49 | Q49H | Q4189H | nonsyn | caG | caT | 2303 | 2279 | 0.989579 | 12830-12832 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2279 | 2303 | All | 0.000436 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1295 | 1295 | B.1.110.3 | 0.930316 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 190 | 190 | AY.39 | 0.004695 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 95 | 118 | B.1.1.7 | 0.000085 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 87 | 87 | AY.117 | 0.007353 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 59 | 59 | AY.4 | 0.000092 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 48 | 48 | B.1.617.2 | 0.000181 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 43 | 43 | AY.71 | 0.020428 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 40 | 40 | B.1 | 0.000366 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 32 | 32 | AY.4.5 | 0.00344 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 28 | 28 | AY.43 | 0.000124 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 25 | 25 | AY.47 | 0.000778 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 13 | 13 | AY.84 | 0.005687 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 13 | 13 | AY.98.1 | 0.00063 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 8 | 8 | B.1.1.219 | 0.04 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 5 | 6 | AY.119 | 0.000177 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 6 | 6 | B.1.1.434 | 0.002091 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 4 | 4 | B.1.1.265 | 0.012618 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 4 | 4 | B.1.351.5 | 0.002398 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | B.1.110 | 0.013575 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.579 | 0.011236 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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