CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 49

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp949Q49HQ4189HnonsyncaGcaT230322790.98957912830-12832
ORF1ab/nsp949Q49HQ4189HnonsyncaGcaC2303240.010421212830-12832
ORF1ab/nsp949Q49QQ4189QsyncaGcaA591591112830-12832
ORF1ab/nsp949Q49LQ4189LnonsyncAgcTg454454112830-12832
ORF1ab/nsp949Q49KQ4189KnonsynCagAag4949112830-12832
ORF1ab/nsp949Q49delQ4189deldelCAG---3232112830-12832
ORF1ab/nsp949Q49XQ4189XnonsynCagTag2222112830-12832
ORF1ab/nsp949Q49RQ4189RnonsyncAgcGg1919112830-12832
ORF1ab/nsp949Q49PQ4189PnonsyncAgcCg1010112830-12832
ORF1ab/nsp949Q49del1Q4189del1delcaGca-840.512830-12832
ORF1ab/nsp949Q49del1Q4189del1delcAgc-g820.2512830-12832
ORF1ab/nsp949Q49del1Q4189del1delCAg-Gg810.12512830-12832
ORF1ab/nsp949Q49del1Q4189del1delCag-ag810.12512830-12832
ORF1ab/nsp949Q49del2Q4189del2delcAGc--11112830-12832

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp949Q49HcaGcaT22792303All0.000436
ORF1ab/nsp949Q49HcaGcaC242303All0.000005
ORF1ab/nsp949Q49HcaGcaT12951295B.1.110.30.930316
ORF1ab/nsp949Q49QcaGcaA591591All0.000113
ORF1ab/nsp949Q49LcAgcTg454454All0.000087
ORF1ab/nsp949Q49LcAgcTg389389AY.620.169499
ORF1ab/nsp949Q49HcaGcaT190190AY.390.004695
ORF1ab/nsp949Q49QcaGcaA147147B.1.1.70.000132
ORF1ab/nsp949Q49HcaGcaT95118B.1.1.70.000085
ORF1ab/nsp949Q49HcaGcaC23118B.1.1.70.000021
ORF1ab/nsp949Q49HcaGcaT8787AY.1170.007353
ORF1ab/nsp949Q49QcaGcaA8686B.1.1.3311
ORF1ab/nsp949Q49HcaGcaT5959AY.40.000092
ORF1ab/nsp949Q49QcaGcaA5555B.1.1.1920.127021
ORF1ab/nsp949Q49KCagAag4949All0.000009
ORF1ab/nsp949Q49HcaGcaT4848B.1.617.20.000181
ORF1ab/nsp949Q49QcaGcaA4545AY.40.00007
ORF1ab/nsp949Q49HcaGcaT4343AY.710.020428
ORF1ab/nsp949Q49LcAgcTg4242B.1.617.20.000158
ORF1ab/nsp949Q49HcaGcaT4040B.10.000366
ORF1ab/nsp949Q49KCagAag3636B.1.1.4130.248276
ORF1ab/nsp949Q49HcaGcaT3535AY.440.000213
ORF1ab/nsp949Q49delCAG---3232All0.000006
ORF1ab/nsp949Q49HcaGcaT3232AY.4.50.00344
ORF1ab/nsp949Q49QcaGcaA3131AY.480.014419
ORF1ab/nsp949Q49HcaGcaT2828AY.430.000124
ORF1ab/nsp949Q49HcaGcaT2525AY.1030.000155
ORF1ab/nsp949Q49HcaGcaT2525AY.470.000778
ORF1ab/nsp949Q49XCagTag2222All0.000004
ORF1ab/nsp949Q49HcaGcaT2020B.1.4290.000471
ORF1ab/nsp949Q49RcAgcGg1919All0.000004
ORF1ab/nsp949Q49QcaGcaA1919B.1.10.000345
ORF1ab/nsp949Q49QcaGcaA1818AY.250.000108
ORF1ab/nsp949Q49HcaGcaT1717B.1.1770.000224
ORF1ab/nsp949Q49QcaGcaA1616B.1.4270.000808
ORF1ab/nsp949Q49QcaGcaA1616B.1.4290.000376
ORF1ab/nsp949Q49QcaGcaA1515AY.30.000149
ORF1ab/nsp949Q49HcaGcaT1313AY.840.005687
ORF1ab/nsp949Q49HcaGcaT1313AY.98.10.00063
ORF1ab/nsp949Q49HcaGcaT1212AY.50.000248
ORF1ab/nsp949Q49PcAgcCg1010All0.000002
ORF1ab/nsp949Q49HcaGcaT1010AY.250.00006
ORF1ab/nsp949Q49HcaGcaT1010B.1.10.000181
ORF1ab/nsp949Q49delCAG---1010B.1.1.70.000009
ORF1ab/nsp949Q49HcaGcaT99B.1.2400.00194
ORF1ab/nsp949Q49HcaGcaT99B.1.5260.000212
ORF1ab/nsp949Q49HcaGcaT99P.1.140.00043
ORF1ab/nsp949Q49del1caGca-48All0.000001
ORF1ab/nsp949Q49del1cAgc-g28All0
ORF1ab/nsp949Q49del1CAg-Gg18All0
ORF1ab/nsp949Q49del1Cag-ag18All0
ORF1ab/nsp949Q49QcaGcaA88AY.290.000126
ORF1ab/nsp949Q49HcaGcaT88AY.610.000838
ORF1ab/nsp949Q49QcaGcaA88B.10.000073
ORF1ab/nsp949Q49HcaGcaT88B.1.1.2190.04
ORF1ab/nsp949Q49HcaGcaT77AY.1020.000186
ORF1ab/nsp949Q49QcaGcaA77AY.430.000031
ORF1ab/nsp949Q49PcAgcCg77AY.430.000031
ORF1ab/nsp949Q49QcaGcaA66AY.1030.000037
ORF1ab/nsp949Q49HcaGcaT56AY.1190.000177
ORF1ab/nsp949Q49HcaGcaC16AY.1190.000035
ORF1ab/nsp949Q49HcaGcaT66B.1.1.2140.000333
ORF1ab/nsp949Q49HcaGcaT66B.1.1.4340.002091
ORF1ab/nsp949Q49QcaGcaA66B.1.20.000053
ORF1ab/nsp949Q49QcaGcaA55AY.1190.000177
ORF1ab/nsp949Q49QcaGcaA55AY.200.000194
ORF1ab/nsp949Q49QcaGcaA55AY.440.00003
ORF1ab/nsp949Q49QcaGcaA55AY.470.000156
ORF1ab/nsp949Q49QcaGcaA55AY.810.00996
ORF1ab/nsp949Q49RcAgcGg55B.1.1.3490.051546
ORF1ab/nsp949Q49HcaGcaT55B.1.20.000044
ORF1ab/nsp949Q49HcaGcaT55B.1.2580.000333
ORF1ab/nsp949Q49QcaGcaA55B.1.617.20.000019
ORF1ab/nsp949Q49HcaGcaT44AY.920.001149
ORF1ab/nsp949Q49HcaGcaT44B.1.1.2650.012618
ORF1ab/nsp949Q49LcAgcTg44B.1.1.70.000004
ORF1ab/nsp949Q49XCagTag44B.1.1.70.000004
ORF1ab/nsp949Q49HcaGcaT44B.1.351.50.002398
ORF1ab/nsp949Q49HcaGcaT44P.10.000063
ORF1ab/nsp949Q49QcaGcaA44P.10.000063
ORF1ab/nsp949Q49QcaGcaA44Q.10.000505
ORF1ab/nsp949Q49QcaGcaA33AY.1020.00008
ORF1ab/nsp949Q49HcaGcaT33AY.120.000948
ORF1ab/nsp949Q49HcaGcaT33AY.30.00003
ORF1ab/nsp949Q49QcaGcaA33AY.450.000365
ORF1ab/nsp949Q49HcaGcaT33AY.460.000312
ORF1ab/nsp949Q49QcaGcaA33AY.46.60.000217
ORF1ab/nsp949Q49HcaGcaT33AZ.20.002463
ORF1ab/nsp949Q49HcaGcaT33B0.000383
ORF1ab/nsp949Q49XCagTag33B.10.000027
ORF1ab/nsp949Q49HcaGcaT33B.1.1.280.000934
ORF1ab/nsp949Q49QcaGcaA33B.1.1.4320.003797
ORF1ab/nsp949Q49HcaGcaT33B.1.1100.013575
ORF1ab/nsp949Q49HcaGcaT33B.1.177.810.000568
ORF1ab/nsp949Q49QcaGcaA33B.1.5260.000071
ORF1ab/nsp949Q49LcAgcTg33P.10.000047
ORF1ab/nsp949Q49HcaGcaT22AY.1180.000125
ORF1ab/nsp949Q49HcaGcaT22AY.140.000176
ORF1ab/nsp949Q49RcAgcGg22AY.250.000012
ORF1ab/nsp949Q49HcaGcaT22AY.330.000134
ORF1ab/nsp949Q49LcAgcTg22AY.340.000194
ORF1ab/nsp949Q49HcaGcaT22AY.340.000194
ORF1ab/nsp949Q49LcAgcTg22AY.380.000999
ORF1ab/nsp949Q49delCAG---22AY.40.000003
ORF1ab/nsp949Q49XCagTag22AY.40.000003
ORF1ab/nsp949Q49HcaGcaT22AY.4.20.000043
ORF1ab/nsp949Q49QcaGcaA22AY.420.00008
ORF1ab/nsp949Q49delCAG---22AY.430.000009
ORF1ab/nsp949Q49LcAgcTg22AY.440.000012
ORF1ab/nsp949Q49QcaGcaA22AY.460.000208
ORF1ab/nsp949Q49HcaGcaT22AY.480.00093
ORF1ab/nsp949Q49KCagAag22B0.000256
ORF1ab/nsp949Q49LcAgcTg22B.1.10.000036
ORF1ab/nsp949Q49RcAgcGg22B.1.10.000036
ORF1ab/nsp949Q49QcaGcaA22B.1.1.1590.009346
ORF1ab/nsp949Q49RcAgcGg22B.1.1.70.000002
ORF1ab/nsp949Q49QcaGcaA22B.1.1770.000026
ORF1ab/nsp949Q49KCagAag22B.1.20.000018
ORF1ab/nsp949Q49QcaGcaA22B.1.2580.000133
ORF1ab/nsp949Q49HcaGcaT22B.1.4270.000101
ORF1ab/nsp949Q49QcaGcaA22B.1.5250.000226
ORF1ab/nsp949Q49QcaGcaA22B.1.5600.009259
ORF1ab/nsp949Q49QcaGcaA22B.1.5960.000174
ORF1ab/nsp949Q49QcaGcaA22B.1.617.10.000258
ORF1ab/nsp949Q49QcaGcaA22C.370.000232
ORF1ab/nsp949Q49HcaGcaT11A.2.50.000499
ORF1ab/nsp949Q49QcaGcaA11A.2.5.10.004808
ORF1ab/nsp949Q49QcaGcaA11A.270.001656
ORF1ab/nsp949Q49del2cAGc--11All0
ORF1ab/nsp949Q49del1caGca-11AY.1000.000046
ORF1ab/nsp949Q49HcaGcaT11AY.1000.000046
ORF1ab/nsp949Q49KCagAag11AY.1030.000006
ORF1ab/nsp949Q49HcaGcaT11AY.1060.000335
ORF1ab/nsp949Q49HcaGcaT11AY.1140.000231
ORF1ab/nsp949Q49HcaGcaT11AY.1160.000287
ORF1ab/nsp949Q49HcaGcaT11AY.1200.000037
ORF1ab/nsp949Q49del1Cag-ag11AY.120.10.000321
ORF1ab/nsp949Q49QcaGcaA11AY.16.10.00047
ORF1ab/nsp949Q49QcaGcaA11AY.230.00007
ORF1ab/nsp949Q49LcAgcTg11AY.250.000006
ORF1ab/nsp949Q49HcaGcaT11AY.260.000028
ORF1ab/nsp949Q49PcAgcCg11AY.260.000028
ORF1ab/nsp949Q49HcaGcaT11AY.270.000065
ORF1ab/nsp949Q49HcaGcaT11AY.290.000016
ORF1ab/nsp949Q49delCAG---11AY.340.000097
ORF1ab/nsp949Q49QcaGcaA11AY.340.000097
ORF1ab/nsp949Q49QcaGcaA11AY.34.10.00051
ORF1ab/nsp949Q49HcaGcaT11AY.350.000233
ORF1ab/nsp949Q49HcaGcaT11AY.360.000148
ORF1ab/nsp949Q49QcaGcaA11AY.390.000025
ORF1ab/nsp949Q49LcAgcTg11AY.390.000025
ORF1ab/nsp949Q49HcaGcaT11AY.39.10.00004
ORF1ab/nsp949Q49QcaGcaA11AY.39.10.00004
ORF1ab/nsp949Q49LcAgcTg11AY.39.10.00004
ORF1ab/nsp949Q49LcAgcTg11AY.40.000002
ORF1ab/nsp949Q49RcAgcGg11AY.40.000002
ORF1ab/nsp949Q49HcaGcaT11AY.420.00004
ORF1ab/nsp949Q49LcAgcTg11AY.430.000004
ORF1ab/nsp949Q49RcAgcGg11AY.430.000004
ORF1ab/nsp949Q49XCagTag11AY.440.000006
ORF1ab/nsp949Q49LcAgcTg11AY.450.000122
ORF1ab/nsp949Q49QcaGcaA11AY.46.40.000165
ORF1ab/nsp949Q49del1caGca-11AY.50.000021
ORF1ab/nsp949Q49delCAG---11AY.5.30.000337
ORF1ab/nsp949Q49LcAgcTg11AY.540.000095
ORF1ab/nsp949Q49HcaGcaT11AY.540.000095
ORF1ab/nsp949Q49QcaGcaA11AY.540.000095
ORF1ab/nsp949Q49QcaGcaA11AY.590.00053
ORF1ab/nsp949Q49HcaGcaT11AY.60.000041
ORF1ab/nsp949Q49HcaGcaT11AY.640.000595
ORF1ab/nsp949Q49HcaGcaT11AY.650.000533
ORF1ab/nsp949Q49del1CAg-Gg11AY.670.000464
ORF1ab/nsp949Q49delCAG---11AY.720.001361
ORF1ab/nsp949Q49HcaGcaT11AY.740.000116
ORF1ab/nsp949Q49RcAgcGg11AY.75.10.00018
ORF1ab/nsp949Q49delCAG---11AY.75.10.00018
ORF1ab/nsp949Q49QcaGcaA11AY.840.000437
ORF1ab/nsp949Q49HcaGcaT11AY.90.000068
ORF1ab/nsp949Q49HcaGcaT11AY.9.20.000037
ORF1ab/nsp949Q49HcaGcaT11AY.980.000079
ORF1ab/nsp949Q49QcaGcaA11AY.99.10.001553
ORF1ab/nsp949Q49HcaGcaT11AY.99.20.000092
ORF1ab/nsp949Q49QcaGcaA11B0.000128
ORF1ab/nsp949Q49XCagTag11B0.000128
ORF1ab/nsp949Q49delCAG---11B.10.000009
ORF1ab/nsp949Q49del1cAgc-g11B.10.000009
ORF1ab/nsp949Q49KCagAag11B.10.000009
ORF1ab/nsp949Q49LcAgcTg11B.10.000009
ORF1ab/nsp949Q49RcAgcGg11B.10.000009
ORF1ab/nsp949Q49XCagTag11B.1.10.000018
ORF1ab/nsp949Q49KCagAag11B.1.10.000018
ORF1ab/nsp949Q49KCagAag11B.1.1.10.000327
ORF1ab/nsp949Q49delCAG---11B.1.1.10.000327
ORF1ab/nsp949Q49QcaGcaA11B.1.1.100.001115
ORF1ab/nsp949Q49HcaGcaT11B.1.1.1280.007092
ORF1ab/nsp949Q49HcaGcaT11B.1.1.150.013514
ORF1ab/nsp949Q49QcaGcaA11B.1.1.1910.004762
ORF1ab/nsp949Q49QcaGcaA11B.1.1.2140.000055
ORF1ab/nsp949Q49HcaGcaT11B.1.1.2400.004695
ORF1ab/nsp949Q49PcAgcCg11B.1.1.2440.015385
ORF1ab/nsp949Q49QcaGcaA11B.1.1.280.000311
ORF1ab/nsp949Q49QcaGcaA11B.1.1.2840.000107
ORF1ab/nsp949Q49HcaGcaT11B.1.1.2840.000107
ORF1ab/nsp949Q49QcaGcaA11B.1.1.2860.002899
ORF1ab/nsp949Q49KCagAag11B.1.1.3060.000438
ORF1ab/nsp949Q49KCagAag11B.1.1.3260.001761
ORF1ab/nsp949Q49delCAG---11B.1.1.3480.000796
ORF1ab/nsp949Q49HcaGcaT11B.1.1.3720.000689
ORF1ab/nsp949Q49XCagTag11B.1.1.3760.005952
ORF1ab/nsp949Q49XCagTag11B.1.1.390.00051
ORF1ab/nsp949Q49HcaGcaT11B.1.1.4320.001266
ORF1ab/nsp949Q49HcaGcaT11B.1.1.500.000679
ORF1ab/nsp949Q49HcaGcaT11B.1.1.5190.00004
ORF1ab/nsp949Q49HcaGcaT11B.1.1.520.012195
ORF1ab/nsp949Q49KCagAag11B.1.1.70.000001
ORF1ab/nsp949Q49del2cAGc--11B.1.1.70.000001
ORF1ab/nsp949Q49RcAgcGg11B.1.1600.000031
ORF1ab/nsp949Q49RcAgcGg11B.1.1770.000013
ORF1ab/nsp949Q49XCagTag11B.1.1770.000013
ORF1ab/nsp949Q49delCAG---11B.1.1770.000013
ORF1ab/nsp949Q49HcaGcaT11B.1.177.120.000152
ORF1ab/nsp949Q49delCAG---11B.1.177.150.000631
ORF1ab/nsp949Q49delCAG---11B.1.177.540.000606
ORF1ab/nsp949Q49QcaGcaA11B.1.177.690.001484
ORF1ab/nsp949Q49delCAG---11B.1.177.810.000189
ORF1ab/nsp949Q49delCAG---11B.1.177.830.001481
ORF1ab/nsp949Q49QcaGcaA11B.1.177.870.000728
ORF1ab/nsp949Q49del1caGca-11B.1.20.000009
ORF1ab/nsp949Q49XCagTag11B.1.20.000009
ORF1ab/nsp949Q49HcaGcaT11B.1.2140.003663
ORF1ab/nsp949Q49HcaGcaT11B.1.2210.000071
ORF1ab/nsp949Q49HcaGcaT11B.1.2340.000132
ORF1ab/nsp949Q49QcaGcaA11B.1.2400.000216
ORF1ab/nsp949Q49delCAG---11B.1.258.30.001675
ORF1ab/nsp949Q49delCAG---11B.1.3110.000275
ORF1ab/nsp949Q49HcaGcaT11B.1.3320.003497
ORF1ab/nsp949Q49HcaGcaT11B.1.351.20.000303
ORF1ab/nsp949Q49HcaGcaT11B.1.351.30.000876
ORF1ab/nsp949Q49QcaGcaA11B.1.360.000146
ORF1ab/nsp949Q49QcaGcaA11B.1.36.180.00042
ORF1ab/nsp949Q49RcAgcGg11B.1.36.250.002208
ORF1ab/nsp949Q49HcaGcaT11B.1.36.290.000517
ORF1ab/nsp949Q49delCAG---11B.1.4000.000429
ORF1ab/nsp949Q49XCagTag11B.1.4020.009804
ORF1ab/nsp949Q49QcaGcaA11B.1.416.10.001563
ORF1ab/nsp949Q49PcAgcCg11B.1.4290.000024
ORF1ab/nsp949Q49del1caGca-11B.1.4290.000024
ORF1ab/nsp949Q49delCAG---11B.1.5250.000113
ORF1ab/nsp949Q49HcaGcaT11B.1.5300.007143
ORF1ab/nsp949Q49KCagAag11B.1.5330.009615
ORF1ab/nsp949Q49KCagAag11B.1.5380.008065
ORF1ab/nsp949Q49HcaGcaT11B.1.5470.02439
ORF1ab/nsp949Q49XCagTag11B.1.5710.009709
ORF1ab/nsp949Q49HcaGcaT11B.1.5790.011236
ORF1ab/nsp949Q49XCagTag11B.1.5820.000491
ORF1ab/nsp949Q49QcaGcaA11B.1.5880.00091
ORF1ab/nsp949Q49HcaGcaT11B.1.5960.000087
ORF1ab/nsp949Q49QcaGcaA11B.1.6090.000479
ORF1ab/nsp949Q49HcaGcaT11B.1.6090.000479
ORF1ab/nsp949Q49RcAgcGg11B.1.617.20.000004
ORF1ab/nsp949Q49del1cAgc-g11B.1.617.20.000004
ORF1ab/nsp949Q49XCagTag11B.1.617.20.000004
ORF1ab/nsp949Q49HcaGcaT11B.1.6210.000089
ORF1ab/nsp949Q49HcaGcaT11B.1.6370.000073
ORF1ab/nsp949Q49QcaGcaA11B.30.000831
ORF1ab/nsp949Q49QcaGcaA11B.340.013699
ORF1ab/nsp949Q49XCagTag11C.160.00106
ORF1ab/nsp949Q49QcaGcaA11C.36.30.000567
ORF1ab/nsp949Q49HcaGcaT11C.370.000116
ORF1ab/nsp949Q49XCagTag11D.20.000075
ORF1ab/nsp949Q49delCAG---11D.20.000075
ORF1ab/nsp949Q49delCAG---11N.40.004255
ORF1ab/nsp949Q49QcaGcaA11P.1.140.000048
ORF1ab/nsp949Q49HcaGcaT11P.1.150.000232
ORF1ab/nsp949Q49HcaGcaT11P.1.170.000162
ORF1ab/nsp949Q49QcaGcaA11P.1.70.000319
ORF1ab/nsp949Q49HcaGcaT11P.1.90.004808
ORF1ab/nsp949Q49HcaGcaT11P.20.000187
ORF1ab/nsp949Q49QcaGcaA11Q.30.000145
ORF1ab/nsp949Q49QcaGcaA11R.10.00009