CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp9 | 49 | Q49H | Q4189H | nonsyn | caG | caT | 2303 | 2279 | 0.989579 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49H | Q4189H | nonsyn | caG | caC | 2303 | 24 | 0.0104212 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49Q | Q4189Q | syn | caG | caA | 591 | 591 | 1 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49L | Q4189L | nonsyn | cAg | cTg | 454 | 454 | 1 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49K | Q4189K | nonsyn | Cag | Aag | 49 | 49 | 1 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49del | Q4189del | del | CAG | --- | 32 | 32 | 1 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49X | Q4189X | nonsyn | Cag | Tag | 22 | 22 | 1 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49R | Q4189R | nonsyn | cAg | cGg | 19 | 19 | 1 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49P | Q4189P | nonsyn | cAg | cCg | 10 | 10 | 1 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49del1 | Q4189del1 | del | caG | ca- | 8 | 4 | 0.5 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49del1 | Q4189del1 | del | cAg | c-g | 8 | 2 | 0.25 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49del1 | Q4189del1 | del | CAg | -Gg | 8 | 1 | 0.125 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49del1 | Q4189del1 | del | Cag | -ag | 8 | 1 | 0.125 | 12830-12832 |
ORF1ab/nsp9 | 49 | Q49del2 | Q4189del2 | del | cAG | c-- | 1 | 1 | 1 | 12830-12832 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2279 | 2303 | All | 0.000436 |
ORF1ab/nsp9 | 49 | Q49H | caG | caC | 24 | 2303 | All | 0.000005 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1295 | 1295 | B.1.110.3 | 0.930316 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 591 | 591 | All | 0.000113 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 454 | 454 | All | 0.000087 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 389 | 389 | AY.62 | 0.169499 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 190 | 190 | AY.39 | 0.004695 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 147 | 147 | B.1.1.7 | 0.000132 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 95 | 118 | B.1.1.7 | 0.000085 |
ORF1ab/nsp9 | 49 | Q49H | caG | caC | 23 | 118 | B.1.1.7 | 0.000021 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 87 | 87 | AY.117 | 0.007353 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 86 | 86 | B.1.1.331 | 1 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 59 | 59 | AY.4 | 0.000092 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 55 | 55 | B.1.1.192 | 0.127021 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 49 | 49 | All | 0.000009 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 48 | 48 | B.1.617.2 | 0.000181 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 45 | 45 | AY.4 | 0.00007 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 43 | 43 | AY.71 | 0.020428 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 42 | 42 | B.1.617.2 | 0.000158 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 40 | 40 | B.1 | 0.000366 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 36 | 36 | B.1.1.413 | 0.248276 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 32 | 32 | All | 0.000006 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 32 | 32 | AY.4.5 | 0.00344 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 31 | 31 | AY.48 | 0.014419 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 28 | 28 | AY.43 | 0.000124 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 25 | 25 | AY.47 | 0.000778 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 22 | 22 | All | 0.000004 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 19 | 19 | All | 0.000004 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 19 | 19 | B.1.1 | 0.000345 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 18 | 18 | AY.25 | 0.000108 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 13 | 13 | AY.84 | 0.005687 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 13 | 13 | AY.98.1 | 0.00063 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp9 | 49 | Q49P | cAg | cCg | 10 | 10 | All | 0.000002 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp9 | 49 | Q49del1 | caG | ca- | 4 | 8 | All | 0.000001 |
ORF1ab/nsp9 | 49 | Q49del1 | cAg | c-g | 2 | 8 | All | 0 |
ORF1ab/nsp9 | 49 | Q49del1 | CAg | -Gg | 1 | 8 | All | 0 |
ORF1ab/nsp9 | 49 | Q49del1 | Cag | -ag | 1 | 8 | All | 0 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 8 | 8 | B.1.1.219 | 0.04 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp9 | 49 | Q49P | cAg | cCg | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 5 | 6 | AY.119 | 0.000177 |
ORF1ab/nsp9 | 49 | Q49H | caG | caC | 1 | 6 | AY.119 | 0.000035 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 6 | 6 | B.1.1.434 | 0.002091 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 5 | 5 | AY.81 | 0.00996 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 5 | 5 | B.1.1.349 | 0.051546 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 4 | 4 | B.1.1.265 | 0.012618 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 4 | 4 | B.1.351.5 | 0.002398 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | B.1.110 | 0.013575 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 2 | 2 | B | 0.000256 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp9 | 49 | Q49del2 | cAG | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp9 | 49 | Q49del1 | caG | ca- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp9 | 49 | Q49del1 | Cag | -ag | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp9 | 49 | Q49P | cAg | cCg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp9 | 49 | Q49del1 | caG | ca- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp9 | 49 | Q49del1 | CAg | -Gg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B | 0.000128 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 49 | Q49del1 | cAg | c-g | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 49 | Q49L | cAg | cTg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.1.191 | 0.004762 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp9 | 49 | Q49P | cAg | cCg | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 49 | Q49del2 | cAG | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp9 | 49 | Q49del1 | caG | ca- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp9 | 49 | Q49P | cAg | cCg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp9 | 49 | Q49del1 | caG | ca- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp9 | 49 | Q49K | Cag | Aag | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.579 | 0.011236 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp9 | 49 | Q49R | cAg | cGg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 49 | Q49del1 | cAg | c-g | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp9 | 49 | Q49X | Cag | Tag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp9 | 49 | Q49del | CAG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp9 | 49 | Q49H | caG | caT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp9 | 49 | Q49Q | caG | caA | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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