CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 46 & Codon = tcT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp946S46SS4186SsyntcCtcT574453950.93924112821-12823

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp946S46StcCtcT53955744All0.001032
ORF1ab/nsp946S46StcCtcT18741904AY.40.002917
ORF1ab/nsp946S46StcCtcT608608B.1.1.1890.919818
ORF1ab/nsp946S46StcCtcT385394P.10.006065
ORF1ab/nsp946S46StcCtcT275326B.1.1.70.000246
ORF1ab/nsp946S46StcCtcT246246AY.9.20.009035
ORF1ab/nsp946S46StcCtcT234234B.1.351.20.070802
ORF1ab/nsp946S46StcCtcT199219B.1.20.001752
ORF1ab/nsp946S46StcCtcT154172B.1.617.20.00058
ORF1ab/nsp946S46StcCtcT135137AY.430.000598
ORF1ab/nsp946S46StcCtcT126126AT.10.646154
ORF1ab/nsp946S46StcCtcT6464Q.70.071111
ORF1ab/nsp946S46StcCtcT6262B.1.1770.000816
ORF1ab/nsp946S46StcCtcT5859B.1.10.001052
ORF1ab/nsp946S46StcCtcT5758AY.440.000347
ORF1ab/nsp946S46StcCtcT5454B.10.000495
ORF1ab/nsp946S46StcCtcT4545B.1.5260.001058
ORF1ab/nsp946S46StcCtcT4040B.1.4290.000941
ORF1ab/nsp946S46StcCtcT2638AY.250.000156
ORF1ab/nsp946S46StcCtcT3333AY.390.000815
ORF1ab/nsp946S46StcCtcT3333B.1.1600.001029
ORF1ab/nsp946S46StcCtcT3232B.1.258.170.003327
ORF1ab/nsp946S46StcCtcT2729AY.30.000269
ORF1ab/nsp946S46StcCtcT2528AY.1020.000663
ORF1ab/nsp946S46StcCtcT2828AY.46.60.002022
ORF1ab/nsp946S46StcCtcT2828B.1.3960.01976
ORF1ab/nsp946S46StcCtcT2425AY.470.000747
ORF1ab/nsp946S46StcCtcT2121AY.1030.00013
ORF1ab/nsp946S46StcCtcT1819AY.260.00051
ORF1ab/nsp946S46StcCtcT1919AY.4.20.000412
ORF1ab/nsp946S46StcCtcT1414AY.46.20.008895
ORF1ab/nsp946S46StcCtcT1313AY.270.000841
ORF1ab/nsp946S46StcCtcT1313B.1.2540.325
ORF1ab/nsp946S46StcCtcT1212B.1.3690.003423
ORF1ab/nsp946S46StcCtcT1111AY.1190.000388
ORF1ab/nsp946S46StcCtcT1111AY.420.000443
ORF1ab/nsp946S46StcCtcT1111B.1.3370.061453
ORF1ab/nsp946S46StcCtcT89B0.001022
ORF1ab/nsp946S46StcCtcT99B.501
ORF1ab/nsp946S46StcCtcT99P.1.140.00043
ORF1ab/nsp946S46StcCtcT88AY.450.000973
ORF1ab/nsp946S46StcCtcT88B.1.36.10.009122
ORF1ab/nsp946S46StcCtcT77AY.1200.00026
ORF1ab/nsp946S46StcCtcT77AY.300.00277
ORF1ab/nsp946S46StcCtcT77AY.39.10.000277
ORF1ab/nsp946S46StcCtcT77AY.4.40.002864
ORF1ab/nsp946S46StcCtcT77B.1.177.810.001325
ORF1ab/nsp946S46StcCtcT67B.1.5960.000523
ORF1ab/nsp946S46StcCtcT47C.370.000464
ORF1ab/nsp946S46StcCtcT16AY.1170.000085
ORF1ab/nsp946S46StcCtcT66AY.200.000233
ORF1ab/nsp946S46StcCtcT66AY.230.000418
ORF1ab/nsp946S46StcCtcT66AY.330.000401
ORF1ab/nsp946S46StcCtcT66AY.50.000124
ORF1ab/nsp946S46StcCtcT66AY.750.000336
ORF1ab/nsp946S46StcCtcT66B.1.1.1980.008811
ORF1ab/nsp946S46StcCtcT66B.1.1.3060.00263
ORF1ab/nsp946S46StcCtcT66B.1.1.3260.010563
ORF1ab/nsp946S46StcCtcT66B.1.1.5190.000238
ORF1ab/nsp946S46StcCtcT66B.1.177.520.010545
ORF1ab/nsp946S46StcCtcT66B.1.6090.002876
ORF1ab/nsp946S46StcCtcT45AY.1000.000184
ORF1ab/nsp946S46StcCtcT55AY.280.009452
ORF1ab/nsp946S46StcCtcT55AY.340.000485
ORF1ab/nsp946S46StcCtcT55AY.99.20.000461
ORF1ab/nsp946S46StcCtcT55B.1.177.210.000382
ORF1ab/nsp946S46StcCtcT45B.1.3510.000119
ORF1ab/nsp946S46StcCtcT55B.1.3620.007704
ORF1ab/nsp946S46StcCtcT55P.1.130.004492
ORF1ab/nsp946S46StcCtcT55P.1.150.001162
ORF1ab/nsp946S46StcCtcT44AY.1180.000251
ORF1ab/nsp946S46StcCtcT44AY.290.000063
ORF1ab/nsp946S46StcCtcT44AY.4.2.10.000596
ORF1ab/nsp946S46StcCtcT44AY.970.006803
ORF1ab/nsp946S46StcCtcT44AZ.20.003284
ORF1ab/nsp946S46StcCtcT44B.1.5650.003241
ORF1ab/nsp946S46StcCtcT44B.1.5760.003626
ORF1ab/nsp946S46StcCtcT44D.20.0003
ORF1ab/nsp946S46StcCtcT44P.20.000747
ORF1ab/nsp946S46StcCtcT33AY.1060.001005
ORF1ab/nsp946S46StcCtcT33AY.3.10.000256
ORF1ab/nsp946S46StcCtcT33AY.60.000123
ORF1ab/nsp946S46StcCtcT33B.1.1.3120.005736
ORF1ab/nsp946S46StcCtcT33B.1.1.3180.000905
ORF1ab/nsp946S46StcCtcT33B.1.177.120.000455
ORF1ab/nsp946S46StcCtcT33B.1.177.440.001557
ORF1ab/nsp946S46StcCtcT33B.1.177.770.002179
ORF1ab/nsp946S46StcCtcT33B.1.2580.0002
ORF1ab/nsp946S46StcCtcT33B.1.4270.000151
ORF1ab/nsp946S46StcCtcT33B.1.5750.00091
ORF1ab/nsp946S46StcCtcT33B.1.617.10.000387
ORF1ab/nsp946S46StcCtcT33N.40.012766
ORF1ab/nsp946S46StcCtcT12AY.100.00053
ORF1ab/nsp946S46StcCtcT22AY.1130.000285
ORF1ab/nsp946S46StcCtcT22AY.1140.000462
ORF1ab/nsp946S46StcCtcT22AY.1160.000574
ORF1ab/nsp946S46StcCtcT22AY.140.000176
ORF1ab/nsp946S46StcCtcT22AY.4.50.000215
ORF1ab/nsp946S46StcCtcT22AY.590.001059
ORF1ab/nsp946S46StcCtcT12AY.75.10.00018
ORF1ab/nsp946S46StcCtcT22AY.820.002714
ORF1ab/nsp946S46StcCtcT22AY.850.000854
ORF1ab/nsp946S46StcCtcT22AY.920.000575
ORF1ab/nsp946S46StcCtcT22AZ.10.001735
ORF1ab/nsp946S46StcCtcT22B.1.1.280.000622
ORF1ab/nsp946S46StcCtcT22B.1.1.4160.00181
ORF1ab/nsp946S46StcCtcT22B.1.1.5120.057143
ORF1ab/nsp946S46StcCtcT22B.1.177.350.001382
ORF1ab/nsp946S46StcCtcT22B.1.2430.000139
ORF1ab/nsp946S46StcCtcT22B.1.36.330.015152
ORF1ab/nsp946S46StcCtcT22B.1.6280.000705
ORF1ab/nsp946S46StcCtcT22P.1.120.000968
ORF1ab/nsp946S46StcCtcT22P.30.00319
ORF1ab/nsp946S46StcCtcT11A.270.001656
ORF1ab/nsp946S46StcCtcT11AE.80.000489
ORF1ab/nsp946S46StcCtcT11AY.1080.001103
ORF1ab/nsp946S46StcCtcT11AY.1110.000183
ORF1ab/nsp946S46StcCtcT11AY.120.000316
ORF1ab/nsp946S46StcCtcT11AY.130.000161
ORF1ab/nsp946S46StcCtcT11AY.240.000431
ORF1ab/nsp946S46StcCtcT11AY.320.000532
ORF1ab/nsp946S46StcCtcT11AY.4.30.000842
ORF1ab/nsp946S46StcCtcT11AY.400.000964
ORF1ab/nsp946S46StcCtcT11AY.46.40.000165
ORF1ab/nsp946S46StcCtcT11AY.5.30.000337
ORF1ab/nsp946S46StcCtcT11AY.5.40.000277
ORF1ab/nsp946S46StcCtcT11AY.510.000909
ORF1ab/nsp946S46StcCtcT11AY.520.000814
ORF1ab/nsp946S46StcCtcT11AY.570.000656
ORF1ab/nsp946S46StcCtcT11AY.630.000387
ORF1ab/nsp946S46StcCtcT11AY.670.000464
ORF1ab/nsp946S46StcCtcT11AY.70.000196
ORF1ab/nsp946S46StcCtcT11AY.7.10.000113
ORF1ab/nsp946S46StcCtcT11AY.740.000116
ORF1ab/nsp946S46StcCtcT11AY.840.000437
ORF1ab/nsp946S46StcCtcT11AY.880.000884
ORF1ab/nsp946S46StcCtcT11AY.9.10.000084
ORF1ab/nsp946S46StcCtcT11AY.98.10.000048
ORF1ab/nsp946S46StcCtcT11B.1.1.10.000327
ORF1ab/nsp946S46StcCtcT11B.1.1.1700.001247
ORF1ab/nsp946S46StcCtcT11B.1.1.2040.00304
ORF1ab/nsp946S46StcCtcT11B.1.1.2070.001182
ORF1ab/nsp946S46StcCtcT11B.1.1.2980.000862
ORF1ab/nsp946S46StcCtcT11B.1.1.3050.003861
ORF1ab/nsp946S46StcCtcT11B.1.1.330.000421
ORF1ab/nsp946S46StcCtcT11B.1.1.390.00051
ORF1ab/nsp946S46StcCtcT11B.1.1.400.034483
ORF1ab/nsp946S46StcCtcT11B.1.1.4320.001266
ORF1ab/nsp946S46StcCtcT11B.1.1040.00369
ORF1ab/nsp946S46StcCtcT11B.1.110.30.000718
ORF1ab/nsp946S46StcCtcT11B.1.1110.001175
ORF1ab/nsp946S46StcCtcT11B.1.1260.001276
ORF1ab/nsp946S46StcCtcT11B.1.1390.000733
ORF1ab/nsp946S46StcCtcT11B.1.1620.005025
ORF1ab/nsp946S46StcCtcT11B.1.177.60.000977
ORF1ab/nsp946S46StcCtcT11B.1.177.600.000218
ORF1ab/nsp946S46StcCtcT11B.1.177.70.000165
ORF1ab/nsp946S46StcCtcT11B.1.177.730.000566
ORF1ab/nsp946S46StcCtcT11B.1.220.001318
ORF1ab/nsp946S46StcCtcT11B.1.2210.000071
ORF1ab/nsp946S46StcCtcT11B.1.2340.000132
ORF1ab/nsp946S46StcCtcT11B.1.258.160.001637
ORF1ab/nsp946S46StcCtcT11B.1.2600.003344
ORF1ab/nsp946S46StcCtcT11B.1.3110.000275
ORF1ab/nsp946S46StcCtcT11B.1.3400.004292
ORF1ab/nsp946S46StcCtcT11B.1.351.30.000876
ORF1ab/nsp946S46StcCtcT11B.1.351.50.0006
ORF1ab/nsp946S46StcCtcT11B.1.36.290.000517
ORF1ab/nsp946S46StcCtcT11B.1.36.360.000602
ORF1ab/nsp946S46StcCtcT11B.1.3700.008
ORF1ab/nsp946S46StcCtcT11B.1.5640.000426
ORF1ab/nsp946S46StcCtcT11B.1.5770.000687
ORF1ab/nsp946S46StcCtcT11B.1.5950.000261
ORF1ab/nsp946S46StcCtcT11B.1.5970.00463
ORF1ab/nsp946S46StcCtcT11B.1.621.10.000506
ORF1ab/nsp946S46StcCtcT11C.140.004329
ORF1ab/nsp946S46StcCtcT11C.330.058824
ORF1ab/nsp946S46StcCtcT11P.1.170.000162
ORF1ab/nsp946S46StcCtcT11P.1.70.000319
ORF1ab/nsp946S46StcCtcT11Q.10.000126
ORF1ab/nsp946S46StcCtcT11Q.30.000145