CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp9 : CodonNum = 46 & Codon = tcA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp946S46SS4186SsyntcCtcA57443290.057277212821-12823

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp946S46StcCtcA3295744All0.000063
ORF1ab/nsp946S46StcCtcA301904AY.40.000047
ORF1ab/nsp946S46StcCtcA9394P.10.000142
ORF1ab/nsp946S46StcCtcA51326B.1.1.70.000046
ORF1ab/nsp946S46StcCtcA1219B.1.20.000009
ORF1ab/nsp946S46StcCtcA18172B.1.617.20.000068
ORF1ab/nsp946S46StcCtcA166166AY.20.059117
ORF1ab/nsp946S46StcCtcA1137AY.430.000004
ORF1ab/nsp946S46StcCtcA159B.1.10.000018
ORF1ab/nsp946S46StcCtcA158AY.440.000006
ORF1ab/nsp946S46StcCtcA1238AY.250.000072
ORF1ab/nsp946S46StcCtcA229AY.30.00002
ORF1ab/nsp946S46StcCtcA328AY.1020.00008
ORF1ab/nsp946S46StcCtcA125AY.470.000031
ORF1ab/nsp946S46StcCtcA119AY.260.000028
ORF1ab/nsp946S46StcCtcA19B0.000128
ORF1ab/nsp946S46StcCtcA17B.1.5960.000087
ORF1ab/nsp946S46StcCtcA37C.370.000348
ORF1ab/nsp946S46StcCtcA56AY.1170.000423
ORF1ab/nsp946S46StcCtcA15AY.1000.000046
ORF1ab/nsp946S46StcCtcA15B.1.3510.00003
ORF1ab/nsp946S46StcCtcA44AY.370.001264
ORF1ab/nsp946S46StcCtcA33AY.116.10.000934
ORF1ab/nsp946S46StcCtcA33AY.710.001425
ORF1ab/nsp946S46StcCtcA12AY.100.00053
ORF1ab/nsp946S46StcCtcA12AY.75.10.00018
ORF1ab/nsp946S46StcCtcA22B.6.60.001778
ORF1ab/nsp946S46StcCtcA11AY.10.000396
ORF1ab/nsp946S46StcCtcA11AY.1210.000135
ORF1ab/nsp946S46StcCtcA11AY.23.10.000417
ORF1ab/nsp946S46StcCtcA11AY.46.50.000198
ORF1ab/nsp946S46StcCtcA11AY.620.000436
ORF1ab/nsp946S46StcCtcA11B.1.258.110.000396